AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_fusions002_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242877 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH174 169 sensory transduction histidine kinase #1 MTH356 188 sensory transduction histidine kinase #2 MTH440 197 sensory transduction regulatory protein #3 MTH447 109 sensory transduction regulatory protein #4 MTH457 194 sensory transduction regulatory protein #5 MTH459 54 sensory transduction histidine kinase #6 MTH619 23 sensory transduction histidine kinase #7 MTH902 126 sensory transduction histidine kinase #8 MTH983 104 unknown #9 MTH1260 90 sensory transduction histidine kinase #10 MTH1261 73 conserved protein #11 MTH1262 165 conserved protein Motif 1 TCCAGAATTTCATCAATTCCATCAATTTATATCT 0 39 1 GGGAAAACCCCCACCTACATCACCCCCCGATT 0 147 0 CTCATCTGCACATCACATTCATAATTTTCATTTC 1 51 1 ACTTGCAGCACAGCTGATCCCTGATCTTCAGTAA 1 121 0 ATCCCTTCACCTGATCCTTCAATGAGCTAAA 2 7 1 TTAGTCCTCCAAACCATCATTTTCACAGA 2 178 0 CTGGACATTGCCCCTGATACTTTGATGTCACTGC 3 42 0 GATGAACTTCAGAAACTTGAGAAACTCCGG 5 6 1 TTTTATCCCCCTAACCTTAAGGTCATCTGG 9 70 0 ACCAACATAACATCTGATTCCTGAAATTGCTCCT 10 45 0 TTCATCACATCCTTAAGTAGGGACAC 11 2 1 GACCATCATGCATCCCATACATAAACTTAAGCAT 11 97 1 **** **** * * MAP Score: 13.9 Motif 2 ATATCCGGTACAGAACCCGGCACCACTGCA 4 83 1 GAAATCTGTACTGAACCAGGCACTGAAGAA 8 73 1 TGCAGCACAGCTGATCCCTGATCTTCAGTA 1 122 0 TCTGGTCACGGCGTCACATTA 3 1 1 ACTGATTGAACAGAATACTGGAAA 0 4 0 AACATAACATCTGATTCCTGAAATTGCTCC 10 46 0 ATCGTTAAAACTGATTATGGAAAATGATTT 9 16 1 ACGGTTGTAGCAGAATATGGACCCGGAAAG 4 52 1 GATGTCACTGCAGAATAAGGTTTAATGTGA 3 23 0 GGACTAATGTCTGGACATTGCCCCTGATAC 3 56 0 ATATTAATATCTGGATAATGTGTGGGTCTT 2 96 1 TCCTTATATATAGAACATGGGGTGCCATGA 8 42 1 CTGATCATTTTTGAACCATGTCACATATCT 7 98 0 GTCACATATCTTGATTACTGTTTACAGCAA 7 79 0 TAAGCCTTATTGGAACCCGGTGATTAAGTT 7 37 1 ********** MAP Score: 12.3567 Motif 3 TAACATAGTGGGGCAGACATGCTGCGTCAGG 0 91 1 CCTCCACAGAGGGGCATGATGTAAATCGGGG 0 124 1 GATGTAAATCGGGGGGTGATGTAGGTGGGGG 0 141 1 TAGAACTTCTGTGGGATCATGTTAATAAAAT 1 164 0 AAGGTTTAATGTGACGCCGTGACCAGA 3 6 0 TTGATTATGTGTGCAGTGGTGCCGGGTTCTG 4 93 0 ATTATTAAATGGGGAGTCACG 6 12 1 TATAGAACATGGGGTGCCATGATGAAATCTG 8 50 1 GGGATGTTATGTTCTTCAGTG 8 93 0 ATGATTTATTGTGCTATGATGAAAATTACAC 9 39 1 TCCCTACTTAAGGATGTGATGAA 11 2 0 ATAAATGTATGTGGAGCCATTAACTACTATC 11 139 1 **** ****** MAP Score: 12.176 Motif 4 TCATGCCCCTCTGTGGAGGAACCTGACGCAGCATG 0 108 0 ATACTTGCAGCACAGCTGATCCCTGATCTTCAGTA 1 122 0 AATTTTAGCTCATTGAAGGATCAGGTGAAGGGAT 2 9 0 ACTTTGATGTCACTGCAGAATAAGGTTTAATGTGA 3 23 0 TCTGCAGTGACATCAAAGTATCAGGGGCAATGTCC 3 39 1 CGGTTGTAGCAGAATATGGACCCGGAAAGGATATC 4 53 1 AAAGGATATCCGGTACAGAACCCGGCACCACTGCA 4 78 1 ATAGATAAGCCTTATTGGAACCCGGTGATTAAGTT 7 32 1 ATCATCTGATCATTTTTGAACCATGTCACATATCT 7 98 0 ATGATGAAATCTGTACTGAACCAGGCACTGAAGAA 8 68 1 GGCAGAAAAACGGTTCAGAGCCATGCTGCTTTAAG 10 12 1 TAAGTAGGGACACACAAGAATCATGCAATTAATTC 11 23 1 AAACCAAATTCAAACGAGAATCAGTAAGAATAATC 11 58 1 * ********* MAP Score: 10.3376 Motif 5 AATTCTGGATGGAAACTGATTGAACAGAATACT 0 15 0 TATAAATTGATGGAATTGATGAAATTCTGGATG 0 37 0 TAACATAGTGGGGCAGACATGCTGCGTCAGGTT 0 91 1 CCTCCACAGAGGGGCATGATGTAAATCGGGGGG 0 124 1 GATGTAAATCGGGGGGTGATGTAGGTGGGGGTT 0 141 1 ATGAAAATTATGAATGTGATGTGCAGATGAGAT 1 49 0 TTCATTTCAGATGCACAGATGTTAAGAGCGTCC 1 77 1 TAGAACTTCTGTGGGATCATGTTAATAAAATCT 1 162 0 ATGGGATCTGTGAAAATGATGGTTTGGAGGACT 2 172 1 GAATCCCAGAGGGCGCTGATAAGG 5 40 1 TGGTTCAAAAATGATCAGATGATAGG 7 110 1 AGAACATGGGGTGCCATGATGAAATCTGTACTG 8 53 1 GTACTGAACCAGGCACTGAAGAACATAACATCC 8 80 1 AACTGATTATGGAAAATGATTTATTGTGCTATG 9 24 1 ATGATTTATTGTGCTATGATGAAAATTACACCC 9 39 1 AGCAATTTCAGGAATCAGATGTTATGTTGGTTT 10 48 1 TCCCTACTTAAGGATGTGATGAA 11 0 0 AATAATCAAATGACCATCATGCATCCCATACAT 11 86 1 ATACATTTATATACTATGATGCTTAAGTTTATG 11 116 0 **** ***** * MAP Score: 9.34378 Motif 6 ATTTATATCTGATGTATGATATAATTAATAA 0 63 1 GGGCAGACATGCTGCGTCAGGTTCCTCCACA 0 101 1 CCTCCACAGAGGGGCATGATGTAAATCGGGG 0 124 1 GATGTAAATCGGGGGGTGATGTAGGTGGGGG 0 141 1 TAGAACTTCTGTGGGATCATGTTAATAAAAT 1 164 0 TTAGCTCATTGAAGGATCAGGTGAAGGGAT 2 9 0 TGGGATCAAAGAGGCGTTAGGACGTTAATCC 2 142 0 AGAACATGGGGTGCCATGATGAAATCTGTAC 8 53 1 ATGATTTATTGTGCTATGATGAAAATTACAC 9 39 1 AAACGGTTCAGAGCCATGCTGCTTTAAGGAG 10 19 1 TTATGTATGGGATGCATGATGGTCATTTGAT 11 90 0 * ********* MAP Score: 9.15436 Motif 7 AATTCCATCAATTTATATCTGATGTATGATAT 0 53 1 CTATGTTATTAATTATATCATACATCAGATAT 0 67 0 TCACCCCCCGATTTACATCATGCCCCTCTGTG 0 128 0 CCTGGACGCTCTTAACATCTGTGCATCTGAAA 1 81 0 CCACCCTTTACTGAAGATCAGGGATCAGCTGT 1 114 1 CTGGCCACATATTAATATCTGGATAATGTGTG 2 88 1 ATGTGTGGGTCTTAATATCCTGATGTGGAGGA 2 113 1 CAACCGTATAATTTCCATCCGGGCTAATAATG 4 27 0 TGGACCCGGAAAGGATATCCGGTACAGAACCC 4 69 1 AAAAAGTTGAATGTATATCTGTAAACCATGTG 4 125 0 AATGATATCGTTAAAACTGATT 9 0 1 TCTGGGTGTAATTTTCATCATAGCACAATAAA 9 43 0 CCCTAACCTTAAGGTCATCTGGGTGTAATTTT 9 60 0 TTAAACCAACATAACATCTGATTCCTGAAAT 10 52 0 TTCATCACATCCTTAAGTAGGGAC 11 2 1 GAATAATCAAATGACCATCATGCATCCCATAC 11 85 1 *** ***** ** MAP Score: 7.90992 Motif 8 CTGTGGAGGAACCTGACGCAGCATGTCTGCCCCA 0 99 0 CTTGCAGCACAGCTGATCCCTGATCTTCAGTAAA 1 120 0 GATTTTATTAACATGATCCCACAGAAGTTCTATG 1 163 1 TCACGGCGTCACATTAAACCTTATTCTGCAGTGA 3 15 1 TAATGTCTGGACATTGCCCCTGATACTTTGATGT 3 48 0 CAATGTCCAGACATTAGTCCTCAGTGATAGCGGT 3 66 1 TAGCTCTGCATTATTAGCCCGGATGGAAATTATA 4 19 1 TTGTAGCAGAATATGGACCCGGAAAGGATATCCG 4 56 1 GGTATACTCTTAATTAAACCTTATTAAATGGT 8 8 0 ACAGATTTCATCATGGCACCCCATGTTCTATATA 8 48 0 CCAACATAACATCTGATTCCTGAAATTGCTCCTT 10 44 0 CCCATACATAAACTTAAGCATCATAGTATATAAA 11 110 1 TGATAGTAGTTAATGGCTCCACATACATTTATAT 11 137 0 * **** ** *** MAP Score: 7.36218 Motif 9 TTCCATCCAGAATTTCATCAATTCCATCAA 0 34 1 AATTTTAGCTCATTGAAGGATCAGGTGAAG 2 14 0 GTTAATCCTCCACATCAGGATATTAAGACC 2 120 0 ACTTTGATGTCACTGCAGAATAAGGTTTAA 3 28 0 CACCACTGCACACATAATCAACCACATGGT 4 103 1 GATGAACTTCAGAAACTTGAGAAA 5 4 1 CGTGACTCCCCATTTAATAATTC 6 3 0 ATATCCATGGAACTTAATCACCGGGTTCCA 7 47 0 ACCATTTAATAAGGTTTAATTA 8 2 1 CTGAACCAGGCACTGAAGAACATAACATCC 8 83 1 TTTAAGGAGCAATTTCAGGAATCAGATGTT 10 41 1 TGTGTGTCCCTACTTAAGGATGTGATGAA 11 9 0 GGTTTGAATTAATTGCATGATTCTTGTGTG 11 33 0 CCCATACATAAACTTAAGCATCATAGTATA 11 110 1 ********** MAP Score: 6.94125 Motif 10 CCAGAATTTCATCAATTCCATCAATTTATATCT 0 40 1 CTGTGGAGGAACCTGACGCAGCATGTCTGCCCC 0 100 0 TCATCTGCACATCACATTCATAATTTTCATTTC 1 52 1 GTCCAGGTCCACCCTTTACTGAAGATCAGGGAT 1 106 1 CTTCTGTGGGATCATGTTAATAAAATCTTTCGG 1 157 0 ATCCCTTCACCTGATCCTTCAATGAGCTAAA 2 8 1 TAGGACGTTAATCCTCCACATCAGGATATTAAG 2 123 0 GTCACATTAAACCTTATTCTGCAGTGACATCAA 3 22 1 CGGAAAGGATATCCGGTACAGAACCCGGCACCA 4 75 1 GATGAACTTCAGAAACTTGAGAAA 5 1 1 TCTGTACTGAACCAGGCACTGAAGAACATAACA 8 77 1 TTCATCACATCCTTAAGTAGGGACAC 11 3 1 ACACACAAGAATCATGCAATTAATTCAAACCAA 11 32 1 ACCATCATGCATCCCATACATAAACTTAAGCAT 11 98 1 **** * ***** MAP Score: 6.71649 Motif 11 GATATAAATTGATGGAATTGATGAAATTCTGGA 0 39 0 AACATAGTGGGGCAGACATGCTGCGTCAGGTTC 0 92 1 TTCCTCCACAGAGGGGCATGATGTAAATCGGGG 0 122 1 AAGTTCCATGGATATACTTGCTGTAAACAGTAA 7 62 1 ATAGAACATGGGGTGCCATGATGAAATCTGTAC 8 51 1 AAAAACGGTTCAGAGCCATGCTGCTTTAAGGAG 10 17 1 GTTTATGTATGGGATGCATGATGGTCATTTGAT 11 90 0 ** * ******* MAP Score: 5.59756 Motif 12 AGTGGGGCAGACATGCTGCGTCAGGTTCCTCCAC 0 97 1 GTCCAGGTCCACCCTTTACTGAAGATCAGGGATC 1 106 1 GATTTTATTAACATGATCCCACAGAAGTTCTATG 1 163 1 ATCCCTTCACCTGATCCTTCAATGAGCTAAAA 2 8 1 GTCACATTAAACCTTATTCTGCAGTGACATCAAA 3 22 1 CAATGTCCAGACATTAGTCCTCAGTGATAGCGGT 3 66 1 CCGGTACAGAACCCGGCACCACTGCACACATAAT 4 87 1 AAGATATGTGACATGGTTCAAAAATGATCAGATG 7 97 1 TCTGTACTGAACCAGGCACTGAAGAACATAACAT 8 77 1 ***** * * *** MAP Score: 2.18821 Motif 13 TGATGGAATTGATGAAATTCTGGATGGAAACTGATTGAA 0 24 0 TTTTAGCTCATTGAAGGATCAGGTGAAGGGAT 2 3 0 ACTGGCCACATATTAATATCTGGATAATGTGTGGGTCTT 2 87 1 TATCACTGAGGACTAATGTCTGGACATTGCCCCTGATAC 3 56 0 TATACGGTTGTAGCAGAATATGGACCCGGAAAGGATATC 4 49 1 GATGAACTTCAGAAACTTGAGAAACTCCG 5 0 1 ATTACACCCAGATGACCTTAAGGTTAGGGGGATAAAA 9 63 1 CTGCTTTAAGGAGCAATTTCAGGAATCAGATGTTATGTT 10 37 1 ** * ****** * MAP Score: 0.767769 Motif 14 TCTGTTCAATCAGTTTCCATCCAGAATTTCAT 0 20 1 CAGAATTTCATCAATTCCATCAATTTATATCT 0 41 1 TTATTAATTATATCATACATCAGATATAAATT 0 62 0 CATGCTGCGTCAGGTTCCTCCACAGAGGGGCA 0 108 1 GGGAAAACCCCCACCTACATCACCCCCCGATT 0 147 0 TTAAGAGCGTCCAGGTCCACCCTTTACTGAAG 1 98 1 ATCCCTTCACCTGATCCTTCAATGAGCTAAA 2 9 1 TACAACCGTATAATTTCCATCCGGGCTAATAA 4 29 0 CCACTGCACACATAATCAACCACATGGTTTAC 4 105 1 TGGTTCAGTACAGATTTCATCATGGCACCCCA 8 59 0 CACAATAAATCATTTTCCATAATCAGTTTTAA 9 20 0 ATCAAATGACCATCATGCATCCCATACATAAA 11 90 1 *** ******* MAP Score: 0.222558