AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_fusions003_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242965 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH123 91 sensory transduction histidine kinase #1 MTH124 126 conserved protein #2 MTH360 136 sensory transduction histidine kinase #3 MTH442 195 excinuclease ABC subunit B #4 MTH443 41 excinuclease ABC subunit A #5 MTH444 133 sensory transduction histidine kinase #6 MTH446 97 sensory transduction regulatory protein #7 MTH468 98 sensory transduction histidine kinase #8 MTH469 178 conserved protein #9 MTH549 126 sensory transduction regulatory protein #10 MTH550 118 DNA-dependent DNA polymerase family X #11 MTH786 139 sensory transduction histidine kinase related protein #12 MTH1607 58 sensory transduction regulatory protein #13 MTH1615 34 conserved protein #14 MTH1618 118 conserved protein #15 MTH1619 104 conserved protein (adenylate kinase related) #16 MTH1621 83 GTP-binding protein, GTP1/OBG family #17 MTH1764 154 sensory transduction regulatory protein Motif 1 AACACCTTGTAGGAGGGTCCCTCTTGACCC 0 27 1 CACTCCAGTAAGGAGGTTGTACTGGACCTC 0 64 0 AAATACTATTTGGAGGGGGCTTGATGCGAA 1 54 1 AATTAATACCCGGTGGGCCTCCGGTAGATA 2 24 1 CTTTACGGTCATGAGGGTGTGTATCTACCG 2 45 0 TATACATAAAATGAGGTGGTATACTGGTTA 2 97 0 AAAACAAGTTCAGTGGGGGTATCATCACAG 3 40 1 CCACAATAGAATGAGGTTCTTATTTTAAGT 3 170 1 TTTCATGGATAAGAGGTTCCATGAAACGCA 5 47 1 TTGAAGACCATGGAGGGCGTGTGAGAA 7 81 1 TTATATCATTCGGAGGTGCTAAA 8 165 1 GAACTTAATCAGGAGCTGGCCAATCCCTGA 9 28 1 TTTTAAGTTCCGGGGGTGGCTGGCA 9 111 1 GAATATACTGTGGTGGGGGTTTTCAT 10 6 0 AACTATCCCAGAGGGGCCTCAGGAGGTT 13 8 1 GAGGGGCCTCAGGAGGTTTCATAG 13 20 1 GGCTGTTCAATGGTGGTGGTAAGACGCAGA 15 13 0 ********** MAP Score: 15.9595 Motif 2 TTTACAGAGATCTTGATGAG 1 116 1 ATCACAGGATTATGGAACACGTGGGATACC 3 63 1 CTTTATGTATCCTGGCAAAGGTATATATAA 3 120 1 CTTATCATTTCATGGATAAGAGGTTCCATG 5 40 1 GAGCAGAGATCCGTGAAGAGCCATGCGTTT 5 70 0 CAGCCGGACCTCTGGAAGAGCAGAGATCCG 5 87 0 GCATGTCTTGAAGACCAGACACCAG 6 5 1 GACCAGACACCAGTGAAGAGCCCACAATAA 6 22 1 TCATTAACCGTAATGAAGAGGAACCGGA 6 79 1 ATGTGAATCCCATTGAAGACCATGGAGGGC 7 69 1 GGGATGAATTCCTTGAAAAGGCTAGGGAAT 8 63 0 TGAAACATTACAGGGCTCAGGGATTGGCCA 9 44 0 TAATAGAAAACCGTTAAGAG 11 0 0 TCCAGTTCAGTCAGGATCAGCCTCAAGTTA 11 30 0 GTCCTAACAATATTGAACACTAAAATCTTA 11 65 1 ATGTTCTATTCCGTTATGAGAGGTTAAACC 14 98 1 TTACCACCACCATTGAACAGCCACCGCACA 15 21 1 CACAGTCTCGCCTTGCTGACTGGAACCGTG 15 79 0 GGTTAATCTATCAGGAAGAGTAAAAAAATC 17 13 1 CCATCAGGAGCCGGGAAAAGATCTTCTCCT 17 69 1 ********** MAP Score: 14.4469 Motif 3 CAAGAGGGACCCTCCTACAAGGTGTTACCATTGGTT 0 17 0 TCGCATCAAGCCCCCTCCAAATAGTATTTAAGATGA 1 47 0 ATCTACCGGAGGCCCACCGGGTATTAATTCATGGAG 2 17 0 CCTCCCACATCTCTTAAAGTATACAT 2 120 0 TTCTCACACGCCCTCCATGGTCTTCAATGGGATT 7 74 0 TTTAGCACCTCCGAATGATATAATAATTAT 8 158 0 TGCCAGCCACCCCCGGAACTTAAAACATGCTC 9 104 0 ATGAAAACCCCCACCACAGTATATTCATTTACA 10 7 1 TGGTTAATGATGGCCACCATATTATAATGC 10 98 1 AGTAATATTTTCACCAGCAATGTATTTAAGATTTTA 11 85 0 TTAACCATCTCCCACAATGAACATCTTGAGTAA 11 116 0 CTGCGTCTTACCACCACCATTGAACAGCCACCGCAC 15 14 1 AAAATCACCTGCATATAATATGAAGGTTAT 16 4 1 AAAGTTATGTCCTCCAGCGGAGGAGAAGATCTTTTC 17 83 0 ** ** *** * ** MAP Score: 14.1422 Motif 4 AGGAGGGTCCCTCTTGACCCAATAAATGAGGTCC 0 37 1 CCAGTACAACCTCCTTACTGGAGTGAACAATC 0 69 1 ATCAAGCCCCCTCCAAATAGTATTTAAGATGAAA 1 45 0 GATACACACCCTCATGACCGTAAAGGTATTTAAT 2 50 1 CAGTGGGGGTATCATCACAGGATTATGGAACACG 3 50 1 AGATATGAGACTCCAGACTCAACTTTATGTATCC 3 98 1 TGCCTTAATTCTCATTACCAGAAAATGT 4 4 0 AAACGCATGGCTCTTCACGGATCTCTGCTCTTCC 5 70 1 TTATTGTGGGCTCTTCACTGGTGTCTGGTCTTCA 6 18 0 GGTTAATGAGCTCAAGACACCTTAAGCCTGGAAA 6 54 0 CCGGTTCCTCTTCATTACGGTTAATGAGCTCAAG 6 72 0 CTCTTAACGGTTTTCTATTATAAC 11 0 1 CTTGAGGCTGATCCTGACTGAACTGGAGTCTGGT 11 33 1 GGTTTAACCTCTCATAACGGAATAGAACATCCAC 14 94 0 TTTTTTACTCTTCCTGATAGATTAACCATC 17 6 0 CTTTTCCCGGCTCCTGATGGATTAACCACGATCC 17 55 0 ***** ** * * * MAP Score: 12.2089 Motif 5 CTTGTAGGAGGGTCCCTCTTGACCCAATAAATGA 0 32 1 ATACTATTTGGAGGGGGCTTGATGCGAACTGTAA 1 56 1 GGGAGGTTTACAGAGATCTTGATGAG 1 110 1 AATTAATACCCGGTGGGCCTCCGGTAGATACACA 2 24 1 CCATGAAACGCATGGCTCTTCACGGATCTCTGCT 5 65 1 CTTCACGGATCTCTGCTCTTCCAGAGGTCCGGCT 5 82 1 ATTTTTCTGACTCTCCTCTTCTGGTC 5 117 1 CTTCACTGGTGTCTGGTCTTCAAGACATGC 6 6 0 AAATTTTATTGTGGGCTCTTCACTGGTGTCTGGT 6 23 0 TCCGGTTCCTCTTCATTACGGTTAATG 6 80 0 CACACGCCCTCCATGGTCTTCAATGGGATTCACA 7 70 0 TCAGGGATTGGCCAGCTCCTGATTAAGTTCTGTC 9 24 0 AGTTCAGTCAGGATCAGCCTCAAGTTATAATAGA 11 23 0 CTATGAAACCTCCTGAGGCCCCTCTGGG 13 16 0 AAGATCTTTTCCCGGCTCCTGATGGATTAACCAC 17 60 0 GCATTATAAAGTTATGTCCTCCAGCGGAGGAGAA 17 92 0 * ******** * MAP Score: 11.1366 Motif 6 ATTAATACCCGGTGGGCCTCCGGTAGATACACA 2 25 1 CCCTGTCAGATATGAGACTCCAGACTCAACTTT 3 91 1 GATAAGAGTGGATCAGATACCTCACTGATGCAG 5 13 0 ATGTCTTGAAGACCAGACACCAGTGAAGAGCCC 6 12 1 TGCCAGCCACCCCCGGAACTTAA 9 113 0 GTTCAGTCAGGATCAGCCTCAAGTTATAATAGA 11 23 0 ATATTGTTAGGACCAGACTCCAGTTCAGTCAGG 11 45 0 AACTATCCCAGAGGGGCCTCAGGAGGTTTCATA 13 10 1 TAACGGAATAGAACATCCACATCTTGCACATTG 14 81 0 CACCACCATTGAACAGCCACCGCACACAGAGGC 15 25 1 ** ***** ** * MAP Score: 10.0119 Motif 7 AGTACAACCTCCTTACTGGAGTGAACAATC 0 71 1 CTCATCAAGATCTCTGTAAACCTCCCTACAACTGC 1 101 0 AGATACACACCCTCATGACCGTAAAGGTATTTAATGGTAA 2 49 1 CCCACGTGTTCCATAATCCTGTGATGATACCCCCACTGAA 3 48 0 TCCCTGCATCAGTGAGGTATCTGATCCACTC 5 1 1 CTCTGGAAGAGCAGAGATCCGTGAAGAGCCATGCGTTTCA 5 68 0 GTCTTGAAGACCAGACACCAGTGAAGAGCCCACAATAAAA 6 14 1 CTGGCCAATCCCTGAGCCCTGTAATGTTTCAGGTTTAAAT 9 43 1 ** * * **** * * MAP Score: 7.92785 Motif 8 CTGTAAACCTCCCTACAACTGCATTCCTGTCCAT 1 89 0 AGATACACACCCTCATGACCGTAAAGGTATTTAA 2 49 1 TCAGTGGGGGTATCATCACAGGATTATGGAACAC 3 49 1 TCATGGAACCTCTTATCCATGAAATGATAAGAGT 5 37 0 GCTCAAGACACCTTAAGCCTGGAAATTTTATTGT 6 45 0 ACCGGTCATTCCTGAACACAGAATCACAATTAAC 7 26 1 CTGTCATGGTCATAATCACTGAATTCCCTAGCCT 8 41 1 AATTCCCTAGCCTTTTCAAGGAATTCATCCCTTT 8 62 1 CTGGCCAATCCCTGAGCCCTGTAATGTTTCAGGT 9 43 1 ATGAAAACCCCCACCACAGTATATTCATTTAC 10 8 1 GTAATATTTTCACCAGCAATGTATTTAAGATTTT 11 86 0 GGTTTAACCTCTCATAACGGAATAGAACATCCA 14 95 0 *** * *** * ** MAP Score: 6.50654 Motif 9 TATGATCCTCCATGAATTAATACCCGGT 2 8 1 TTTAATGGTAACCCGGATATAACCAGTATA 2 78 1 GATGATACCCCCACTGAACTTGTTTTAAAC 3 36 0 ATATAAGTTGACCCTGAAATATAATCCCAC 3 144 1 TCCCTGCATCAGTGAGGTAT 5 0 1 GAACCTCTTATCCATGAAATGATAAGAGTG 5 36 0 GATAAGAGGTTCCATGAAACGCATGGCTCT 5 54 1 GCATGGCTCTTCACGGATCTCTGCTCTTCC 5 74 1 ATGGTCATAATCACTGAATTCCCTAGCCTT 8 46 1 CCTAGCCTTTTCAAGGAATTCATCCCTTTC 8 67 1 AGCTGGCCAATCCCTGAGCCCTGTAATGTT 9 41 1 TGCCAGCCACCCCCGGAACTTAAAACATGC 9 106 0 ATTTACTGTTTCCCTGAACCAAAAGTCTGG 10 71 1 AGGCTGATCCTGACTGAACTGGAGTCTGGT 11 37 1 GAAGATCTTTTCCCGGCTCCTGATGGATTA 17 65 0 ********** MAP Score: 6.30958 Motif 10 GATGCGAACTGTAATGGACAGGAATGCAGT 1 76 1 GTAAAGGTATTTAATGGTAACCCGGATATA 2 69 1 GGGATTATATTTCAGGGTCAACTTATATAT 3 142 0 CTCTTATCATTTCATGGATAAGAGGTTCCA 5 38 1 AGCCATGCGTTTCATGGAACCTCTTATCCA 5 52 0 TATCAAGGCTGTCATGGTCATAATCACTGA 8 33 1 AGACTTTTGGTTCAGGGAAACAGTAAATTT 10 69 0 ACTGATTAATGGACATCCATGCAGA 12 5 1 GATATAAAATATAAGGGAAAATATTTAATA 16 42 1 AAAATATTTAATAATGGATAATAGAGAACA 16 59 1 ********** MAP Score: 5.0142 Motif 11 ATGCGAACTGTAATGGACAGGAATGCAGTTGTAGGGAG 1 77 1 ACCGGAGGCCCACCGGGTATTAATTCATGGAGGATCAT 2 11 0 ACTGGTTATATCCGGGTTACCATTAAATACCTTTACGG 2 67 0 CTCATTCTATTGTGGGATTATATTTCAGGGTCAACTTA 3 147 0 ACAGGGAACCTACCGGTCATTCCTGAACACAGAATCAC 7 15 1 TGCTTAAGCTTCGGGACAGAACTTAATCAGGAGCTGG 9 9 1 AGACTTTTGGTTCAGGGAAACAGTAAATTTATTAATCG 10 61 0 GTCTGGTTAATGATGGCCACCATATTATAATGC 10 95 1 TTAAATACATTGCTGGTGAAAATATTACTCAAGATGTT 11 92 1 ACTGATTAATGGACATCCATGCAGATAAAATACA 12 6 1 ATATAAAATATAAGGGAAAATATTTAATAATGGATAAT 16 43 1 AAATATTTAATAATGGATAATAGAGAACACTGA 16 60 1 CTACCGAGGATCGTGGTTAATCCATCAGGAGCCGGGAA 17 48 1 TCTCCTCCGCTGGAGGACATAACTTTATAATGCTTCAG 17 93 1 * ** * * ***** MAP Score: 2.0931 Motif 12 CTTGGTTTCATCTTAAATACTATTTGGAGG 1 40 1 TCCGGGTTACCATTAAATACCTTTACGGTC 2 65 0 ACTGAACTTGTTTTAAACATAAATCAGAGG 3 24 0 ATAAGTTGACCCTGAAATATAATCCCACAA 3 146 1 AAATCACTTAAAATAAGAACCTCATT 3 179 0 CCGCTATTTTCATAAAATATATCAAAAAAC 8 125 1 CCTATTTAAACCTGAAACATTACAGGGCTC 9 56 0 ACCCCCGGAACTTAAAACATGCTCCATCAA 9 98 0 AACACTAAAATCTTAAATACATTGCTGGTG 11 80 1 TGGAAAAGGTTTTTAAATATGGAAACACAA 14 10 1 ACACAAAGCACTTATAATATTCTTCTTGTG 14 34 1 AAATCACCTGCATATAATATGAAGGTTATG 16 11 1 GGTTATGGGATATAAAATATAAGGGAAAAT 16 34 1 TATTATCCATTATTAAATATTTTCCCTTAT 16 52 0 ********** MAP Score: 2.06425 Motif 13 CACAGGATTATGGAACACGTGGGATACCCT 3 65 1 TTATGTATCCTGGCAAAGGTATATATAAGT 3 122 1 ATGATAAGAGTGGATCAGATACCTCACTGA 5 18 0 TATCATTTCATGGATAAGAGGTTCCATGAA 5 42 1 TGGAAACAGGGAACCTACCGG 7 1 1 AAACATTACAGGGCTCAGGGATTGGCCAGC 9 42 0 ACCAGACTTTTGGTTCAGGGAAACAGTAAA 10 72 0 TGGAAAAGGTTTTTAAATAT 14 0 1 TAAAATATAAGGGAAAATATTTAATAATGG 16 46 1 TATTTAATAATGGATAATAGAGAACACTGA 16 63 1 ATCAGGAGCCGGGAAAAGATCTTCTCCTCC 17 71 1 ********** MAP Score: 1.90551 Motif 14 TCCTGTGAAAATGATAAATCTCTTATCTTGGTTT 1 14 1 AATCACTTAAAATAAGAACCTCATTCTATTGTGG 3 170 0 TTTCAATCCTATCAAAAAAATTTTTTGAGCACCC 8 93 1 AACAATATTGAACACTAAAATCTTAAATACATTG 11 70 1 ACCATCTCCCACAATGAACATCTTGAGTAATATT 11 112 0 TAAAATACAGAATACAAAAATTTTTATACAGCC 12 35 1 TAAATATGGAAACACAAAGCACTTATAATATTCT 14 23 1 CTGACTGCACAAGAAGAATATTATAAGTGCTTTG 14 37 0 TATCAGGAAGAGTAAAAAAATCTTCCCCTACCGA 17 21 1 * * *** ***** MAP Score: 0.169471