AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_fusions005_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944243032 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH1522 116 nitrogenase alpha chain (NifD) related protein #1 MTH1583 44 conserved protein #2 MTH1584 112 phosphomannomutase #3 MTH1591 30 phosphonopyruvate decarboxylase #4 MTH1592 21 conserved protein #5 MTH1593 205 ribosomal protein S3a #6 MTH1594 72 conserved protein #7 MTH1598 300 conserved protein #8 MTH1759 70 mannose-1-phosphate guanyltransferase #9 MTH1762 159 DNA mismatch recognition protein MutS #10 MTH1763 28 collagenase #11 MTH1764 154 sensory transduction regulatory protein #12 MTH1791 23 glucose-1-phosphate thymidylyltransferase #13 MTH1792 116 dTDP-4-dehydrorhamnose reductase #14 MTH1793 43 unknown #15 MTH1794 72 unknown Motif 1 ATCCATGGATATGAATCATGGGATGGATTTGCATCA 0 43 1 GTCTGTGGTTATGCAACATGGCTGGAACCATGATGC 0 73 0 TAGCACTGGCCTCCTCCAGGGGGAGGAGGTTGACCT 6 18 1 GGAGGTTGACCTCCATTTCGGGAGGGCCTCCCAGTT 6 42 1 ACCTCACATCCACCACAACGGCAAGGTGCCCGAGAC 7 62 1 CTTAAATAATCTCCACATGAACATGGTAGTGGAGTG 7 142 0 ATATCACCTGCTGCACACCGGGAGGGAGACC 7 279 1 TCGAAGGTCGCTGCTGATGGGTATGGCAGTTATA 9 8 0 CCAGATTTTACTTCAGAAAGAGTGGGGATATTAGGT 9 57 0 ATCGTGGTTAATCCATCAGGAGCCGGGAAAAGATCT 11 57 1 TTCCTGCAATCAGATAAGGGATTTGTTAT 13 3 1 TCCAGAATAAAACCAGGGAAAGAGGGGTTTGTATTA 13 50 1 ***** *** ** MAP Score: 12.3682 Motif 2 CACAGACATTTGAGGTGACGTAAT 0 102 1 CTTTATTCATTGAGGTAATGTGATTAAAAAT 2 10 1 TGGGGTGCTGTGTGGTCATGAATATGAACAG 5 23 0 TGTTAAAGATTAAGGTGATATA 5 193 1 TCCTCCCCCTGGAGGAGGCCAGTGCTATCCT 6 14 0 TCCTCCAGGGGGAGGAGGTTGACCTCCATTT 6 29 1 TGAGAACCATTGAGATGATTAAACATGACCT 7 35 1 GTGGTGGATGTGAGGTCATGTTTAATCATCT 7 47 0 ATGCACAGTCTGAGGAAATCAAACAGTATAT 7 104 0 ACCATGTTCATGTGGAGATTATTTAAGAAAA 7 151 1 CCGGTGTGCAGCAGGTGATATTGATCATAAA 7 269 0 GATTTTAACCGGAGGAAATTTCAG 10 14 1 CTCCAGCGGAGGAGAAGATCTTTTCCCGGCT 11 77 0 CTCCTCCGCTGGAGGACATAACTTTATAATG 11 94 1 ATGAAAGTCTGAGGAGGTGAAGC 12 9 1 ********* * MAP Score: 10.6058 Motif 3 CTGGCCTCCTCCAGGGGGAGGAGGTTGACC 6 23 1 AAAGCACATACCGGATAGAGAACCCCCCTC 7 212 1 TGCTGCACACCGGGAGGGAGACC 7 287 1 AGATTTTACTTCAGAAAGAGTGGGGATATT 9 61 0 CCATATATATCCAGGGAAATTTATAGTTGG 9 138 1 CTGATTTTAACCGGAGGAAATTTCAG 10 12 1 GGTTAATCTATCAGGAAGAGTAAAAAAATC 11 13 1 CCATCAGGAGCCGGGAAAAGATCTTCTCCT 11 69 1 CAGAATAAAACCAGGGAAAGAGGGGTTTGT 13 52 1 CAATAAAAGACCAGAGAGAGGTGCTCAG 13 98 1 ********** MAP Score: 9.63024 Motif 4 ATCAATCCATGGATATGAATCATGGGATGGATTTGCATC 0 39 1 AAATGTCTGTGGTTATGCAACATGGCTGGAACCATGATG 0 74 0 AGATCATAAATCTAGGAAGGTGGGTTAATC 3 1 1 GGATAAGGGAGTATTTAAATCTTGACATGGTGGTTTGGG 5 50 0 CATACTGGCGGTGTATGTAACTCTAAATCATGGTTAACC 5 104 1 GAACCATTGAGATGATTAAACATGACCTCACATCCACCA 7 38 1 CACAGTCTGAGGAAATCAAACAGTATATGGAGACGTCTC 7 93 0 ATGTTCATGTGGAGATTATTTAAGAAAAGAGATAGAGAG 7 154 1 GATGGTTAATCTATCAGGAAGAGTAAAAAAATC 11 4 1 GAGGATCGTGGTTAATCCATCAGGAGCCGGGAAAAGATC 11 53 1 GTTTTATTCTGGATATCTTTCATGATAACAAATCCCTTA 13 24 0 AGGGAAAGAGGGGTTTGTATTAAGATCCCTCTAACAATA 13 64 1 * ** **** ** * MAP Score: 9.16117 Motif 5 AACCTCCTCCCCCTGGAGGAGGCCAGTGCTATCC 6 15 0 CTGCTGCACACCGGGAGGGAGACC 7 286 1 CTGATAACGCCCCACAGGAGGGCCATGAGAACC 7 9 1 TAAAGCACATACCGGATAGAGAACCCCCCTCAAT 7 211 1 GGAGGCCCTCCCGAAATGGAGGTCAACCTCCTCC 6 39 0 AGATCTTCTCCTCCGCTGGAGGACATAACTTTAT 11 87 1 ACAATAAAAGACCAGAGAGAGGTGCTCAG 13 97 1 AAAAATTCATACGGAGTGAAGGTCTGACTTTATC 2 35 1 TCCATCAGGAGCCGGGAAAAGATCTTCTCCTCCG 11 68 1 CCAGAATAAAACCAGGGAAAGAGGGGTTTGTATT 13 51 1 TATTTAAGAAAAGAGATAGAGAGCGCCTGAGAAG 7 170 1 AAAAATCTTCCCCTACCGAGGATCGTGGTTAATC 11 36 1 *** * ***** * MAP Score: 9.01466 Motif 6 TAAATGAATATTAATCAATCCATGGATATG 0 26 1 TCCCATGATTCATATCCATGGATTGATTAA 0 36 0 AACCATGATGCAAATCCATCCCATGATTCA 0 54 0 AAGGTCTGACTTTATCCATATTGGTGATTA 2 53 1 AGATCATAAATCTAGGAAGGTGGGTT 3 6 1 GAATTTATGTTAAATCCAGCTGTTTTTACG 5 162 1 AATAAGTATTTTTTTCCAGCGAATATGCAA 8 30 0 TGAATCCATATATATCCAGGGAAATTTATA 9 133 1 GATGGTTAATCTATCAGGAAGAGTA 11 5 1 AGGATCGTGGTTAATCCATCAGGAGCCGGG 11 54 1 ATATCCAGAATAAAACCAGGGAAAGAGGGG 13 47 1 TTTAATCCATCCGAATATTTC 15 61 0 ********** MAP Score: 8.71465 Motif 7 CTATTACCTAATTAATTTATGGAGGGAGAAC 1 23 1 GAGGATAGCACTGGCCTCCTCCAGGGGGAGGAGGTT 6 13 1 GGAGGTTGACCTCCATTTCGGGAGGGCCTCCCAGTT 6 42 1 CTGATAACGCCCCACAGGAGGGCCATGAGAAC 7 6 1 ACCTCACATCCACCACAACGGCAAGGTGCCCGAGAC 7 62 1 ATATCACCTGCTGCACACCGGGAGGGAGACC 7 279 1 TATAACTGCCATACCCATCAGCAGCGACCTTCGATG 9 10 1 CACTCTGAATCCATATATATCCAGGGAAATTTATAG 9 128 1 GTAAAAAAATCTTCCCCTACCGAGGATCGTGGTTAA 11 32 1 AAAAGATCTTCTCCTCCGCTGGAGGACATAACTTTA 11 84 1 GAAAGATATCCAGAATAAAACCAGGGAAAGAGGGGT 13 42 1 * * * * ****** MAP Score: 7.98869 Motif 8 ATGAATATTAATCAATCCATGGATATGAATCAT 0 29 1 ATCCATGGATATGAATCATGGGATGGATTTGCA 0 43 1 CTATTACCTAATTAATTTATGGAGGGAGAAC 1 23 1 CTTTATTCATTGAGGTAATGTGATTAA 2 4 1 AGATCATAAATCTAGGAAGGTGGGTTAA 3 5 1 ATACTCTATAATAGGATAAGGGAGTATTTAAAT 5 69 0 CTGAATCCATATATATCCAGGGAAATTTATAGT 9 132 1 TTCCTGCAATCAGATAAGGGATTTGTTATCA 13 8 1 GATATCCAGAATAAAACCAGGGAAAGAGGGGTT 13 46 1 ** *** ***** MAP Score: 7.87542 Motif 9 TGGATTGATTAATATTCATTTAGAAGCTTACATA 0 14 0 TGAATATTAATCAATCCATGGATATGAATCATGG 0 30 1 TATTACCTAATTAATTTATGGAGGGAGAAC 1 24 1 CTTTATTCATTGAGGTAATGTGATT 2 1 1 AATGTGATTAAAAATTCATACGGAGTGAAGGTCT 2 26 1 AAGGTCTGACTTTATCCATATTGGTGATTAACAA 2 53 1 ATAAATTCAAAAAATTCATATTTAACTGGTTAAC 5 136 0 ATGAATTTTTTGAATTTATGTTAAATCCAGCTGT 5 151 1 ATTAGGTGCAATAATTCACATCGAAGGTCGCTGC 9 30 0 ACACGCACTCTGAATCCATATATATCCAGGGAAA 9 123 1 GATGGTTAATCTATCAGGAAGAGTAAAAA 11 5 1 AGGATCGTGGTTAATCCATCAGGAGCCGGGAAAA 11 54 1 TTTAATCCATCCGAATATTTCACCA 15 57 0 * ******* ** MAP Score: 7.10639 Motif 10 GCCATGTTGCATAACCACAGACATTTGAGGTGACGTAA 0 87 1 TTTTTAACAGCCCCATTCACTGGATAATATTTGA 2 88 0 GAGGATAGCACTGGCCTCCTCCAGGGGGAGGAGGTTGA 6 13 1 GGGGAGGAGGTTGACCTCCATTTCGGGAGGGCCTCCCA 6 37 1 CTGATAACGCCCCACAGGAGGGCCATGAGAA 7 3 1 TAAACATGACCTCACATCCACCACAACGGCAAGGTGCC 7 54 1 ATACTGTTTGATTTCCTCAGACTGTGCATAATAATCCA 7 106 1 TTCTTAAATAATCTCCACATGAACATGGTAGTGGAGTG 7 142 0 TATGATCAATATCACCTGCTGCACACCGGGAGGGAGAC 7 271 1 ATTGCACCTAATATCCCCACTCTTTCTGAAGTAAAATC 9 52 1 ACAGAGAATACTTTCCACACGCACTCTGAATCCATATA 9 107 1 GAGTAAAAAAATCTTCCCCTACCGAGGATCGTGGTTAA 11 30 1 GAGAAGATCTTTTCCCGGCTCCTGATGGATTAACCACG 11 59 0 TTATAAAGTTATGTCCTCCAGCGGAGGAGAAGATCTTT 11 85 0 ATCCGAATATTTCACCAGAGTCTCTGCGTTATTATTAT 15 36 0 ** ** ** * * ** MAP Score: 6.63369 Motif 11 ATTAATCAATCCATGGATATGAATCATGGGAT 0 35 1 TAACCACAGACATTTGAGGTGACGTAAT 0 98 1 CTGACTTTATCCATATTGGTGATTAACAATTC 2 58 1 ATAGAGTATTCCATACTGGCGGTGTATGTAAC 5 93 1 AACCTCCTCCCCCTGGAGGAGGCCAGTGCTAT 6 17 0 CTGATAACGCCCCACAGGAGGGCCATGAGAA 7 9 1 GCCATGAGAACCATTGAGATGATTAAACATGA 7 31 1 GGGCACCTTGCCGTTGTGGTGGATGTGAGGTC 7 61 0 TCAGCAGCGACCTTCGATGTGAATTATTGCAC 9 27 1 TTATGTCCTCCAGCGGAGGAGAAGATCTTTTC 11 83 0 ** * ******* MAP Score: 6.39313 Motif 12 TGGATAAAGTCAGACCTTCACTCCGTATGAA 2 40 0 TTTTTAACAGCCCCATTCACTGGATAAT 2 94 0 TCAAATGGATCGGGACCCCTC 4 10 1 TGTTCATATTCATGACCACACAGCACCCCAA 5 24 1 GAGGATAGCACTGGCCTCCTCCAGGGGGAGG 6 13 1 AAGGAACTGGGAGGCCCTCCCGAAATGGAGG 6 51 0 GATGATTAAACATGACCTCACATCCACCACA 7 48 1 GAGACGTCTCGGGCACCTTGCCGTTGTGGTG 7 72 0 CTTTACTTCTCAGGCGCTCTCTATCTCTTTT 7 178 0 ATACCGGATAGAGAACCCCCCTCAATAACTC 7 219 1 CTGAGCACCTCTCTCTGGTCTTT 13 103 0 ********* * MAP Score: 6.34105 Motif 13 CATGGATATGAATCATGGGATGGATTTGCATCAT 0 46 1 TTACCTAATTAATTTATGGAGGGAGAAC 1 26 1 GGTTGACCTCCATTTCGGGAGGGCCTCCCAGTTC 6 45 1 CTGATAACGCCCCACAGGAGGGCCATGAGAACC 7 9 1 TATTTAAGAAAAGAGATAGAGAGCGCCTGAGAAG 7 170 1 AGAGTAAAGCACATACCGGATAGAGAACCCCCCT 7 207 1 TCACCTGCTGCACACCGGGAGGGAGACC 7 282 1 AGAATAAAACCAGGGAAAGAGGGGTTTGTATTAA 13 53 1 TCTAACAATAAAAGACCAGAGAGAGGTGCTCAG 13 93 1 GAAATACTTTATAGATGGAACCGTAGATA 15 5 1 ACTCTGGTGAAATATTCGGATGGATTAAA 15 53 1 ** * ******* MAP Score: 4.64711 Motif 14 TAATTAATTTATGGAGGGAGAAC 1 31 1 CCTCCTCCCCCTGGAGGAGGCCAGTGCTAT 6 17 0 CCTCCTCCAGGGGGAGGAGGTTGACCTCCA 6 27 1 TTATGCACAGTCTGAGGAAATCAAACAGTA 7 107 0 ATAGAGAGCGCCTGAGAAGTAAAGAGTAAA 7 185 1 AAAGCACATACCGGATAGAGAACCCCCCTC 7 212 1 ACACTGAGTTATTGAGGGGGGTTCTCTATC 7 225 0 TGCTGCACACCGGGAGGGAGACC 7 287 1 GAAGGTCGCTGCTGATGGGTATGGCAGTTA 9 12 0 CTGATTTTAACCGGAGGAAATTTCAG 10 12 1 TTTTACTCTTCCTGATAGATTAACCATC 11 8 0 ACGATCCTCGGTAGGGGAAGATTTTTTTAC 11 32 0 TTTCCCGGCTCCTGATGGATTAACCACGAT 11 57 0 ATGTCCTCCAGCGGAGGAGAAGATCTTTTC 11 83 0 ATGAAAGTCTGAGGAGGTGAAGC 12 7 1 CAGAATAAAACCAGGGAAAGAGGGGTTTGT 13 52 1 TCTTTTATTGTTAGAGGGATCTTAATACAA 13 78 0 CAATAAAAGACCAGAGAGAGGTGCTCAG 13 98 1 GGTGAAATATTCGGATGGATTAAA 15 58 1 ********** MAP Score: 3.88991 Motif 15 CACTCCGTATGAATTTTTAATCACATTACC 2 23 0 GATAATATTTGAATTGTTAATCACCAATAT 2 70 0 TAGGATAAGGGAGTATTTAAATCTTGACAT 5 61 0 AGTTAAATATGAATTTTTTGAATTTATGTT 5 143 1 TTCATGTGGAGATTATTTAAGAAAAGAGAT 7 157 1 GGTAGGGGAAGATTTTTTTACTCTTCCTGA 11 23 0 TTCAGACACAGAATTATTTAGGATTATTTT 11 126 1 AATTATTTAGGATTATTTTAGTGATAA 11 137 1 TAATCCATCCGAATATTTCACCAGAGTCTC 15 50 0 ********** MAP Score: 3.22915 Motif 16 ATTACGTCACCTCAAATGTCTGTGGTTATGCAACA 0 91 0 CAACCTCCTCCCCCTGGAGGAGGCCAGTGCTATCCTCAT 6 11 0 ACTGGGAGGCCCTCCCGAAATGGAGGTCAACCTCCTCCC 6 38 0 CTGATAACGCCCCACAGGAGGGCCATGAGAACCATTG 7 8 1 GACCTCACATCCACCACAACGGCAAGGTGCCCGAGACGT 7 61 1 ATAATCCACTCCACTACCATGTTCATGTGGAGATTATTT 7 136 1 GAGATAGAGAGCGCCTGAGAAGTAAAGAGTAAAGCACAT 7 182 1 GATAGAGAACCCCCCTCAATAACTCAGTGTATGTGCATC 7 225 1 ACTGCCATACCCATCAGCAGCGACCTTCGATGTGAATTA 9 14 1 CTGGGAGTAACCGCTTCAACAGAGAATACTTTCCACACG 9 89 1 AAAAAATCTTCCCCTACCGAGGATCGTGGTTAATCCATC 11 35 1 AAAGTTATGTCCTCCAGCGGAGGAGAAGATCTTTTCCCG 11 80 0 ** ** *** * * * MAP Score: 2.37577 Motif 17 ATTAATCAATCCATGGATATGAATCATGGGA 0 35 1 CCTCAAATGTCTGTGGTTATGCAACATGGCT 0 86 0 CAGACCTTCACTCCGTATGAATTTTTAATCA 2 30 0 CAGCCCCATTCACTGGATAATATTTGAATTG 2 84 0 TCCATACTGGCGGTGTATGTAACTCTAAATC 5 102 1 TAATCTTTAACACCGTAAAAACAGCTGGATT 5 174 0 AACCTCCTCCCCCTGGAGGAGGCCAGTGCTA 6 18 0 GCCATGAGAACCATTGAGATGATTAAACATG 7 31 1 CTTGCCGTTGTGGTGGATGTGAGGTCATGTT 7 56 0 AGATAGAGAGCGCCTGAGAAGTAAAGAGTAA 7 183 1 CTCAATAACTCAGTGTATGTGCATCTTAAGT 7 239 1 ATTGCATATTCGCTGGAAAAAAATACTTATT 8 29 1 CATCGAAGGTCGCTGCTGATGGGTATGGCAG 9 15 0 GGAAAGTATTCTCTGTTGAAGCGGTTACTCC 9 92 0 CTATAAATTTCCCTGGATATATATGGATTCA 9 133 0 CTGAAATTTCCTCCGGTTAAAATCAGGT 10 7 0 TGTCCTCCAGCGGAGGAGAAGATCTTTTCCC 11 81 0 ATGAAAGTCTGAGGAGGTGAAGC 12 8 1 ACCCCTCTTTCCCTGGTTTTATTCTGGATAT 13 47 0 AACGCAGAGACTCTGGTGAAATATTCGGATG 15 44 1 * ********* MAP Score: 0.410175