AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_fusions007_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243136
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH709	300	GMP synthetase, subunit A
#1	MTH710	102	GMP synthetase, subunit B
#2	MTH1655	78	anthranilate synthase component I
#3	MTH1660	37	tryptophan synthase, subunit alpha 

Motif 1
TCTTTTTATGAAATGAGTTTAAATCAGGTTGCGCAT	0	26	1
TACTCTCCAGATATGATTATTCAGGATAGCATCAGC	0	66	1
CCCCGCAGGAAGATGTATATGATGTATGCAATTATA	0	122	1
TTTACCGAATAATTAAATATTATGGAGGCAGTGGAT	0	241	0
GGTAAAATATAAATAGCTTTTCAGAATCAGAAGAGG	0	271	1
CCTTAACATTAAATAGATGTCCTGCAAGATAATAAA	1	59	1
TACAGAGGTGATATGCATGTACAGGA          	2	62	1
          * ***  * * *** *
MAP Score: 5.73749

Motif 2
CAAGCTGATGCTATCCTGAATAATCATATCTGGAGA	0	69	0
ACACTCCTTCCCCGCAGGAAGATGTATATGATGTAT	0	113	1
GGGTAGCAGCCATACCAGAACATAGAAAGCGACAAC	0	172	1
AAGGACGAGTGCAACCAGAATGTAAATTATATCCAC	0	211	1
TATATCCACTGCCTCCATAATATTTAATTATTCGGT	0	238	1
AGAACACCGTCCATCCTTAACATTAAATAGATGTCC	1	45	1
AAATAGATGTCCTGCAAGATAATAAATCAATCATTT	1	69	1
TTAAATAGTACCTCCGTGTATATGTACTTTGTGGAT	2	27	1
          **  ** *** **  *
MAP Score: 5.11385

Motif 3
AGTGGATATAATTTACATTCTGGTTGCACTCGTCCT	0	212	0
CCGCAGGAAGATGTATATGATGTATGCAATTATAAG	0	124	1
CGGAGGTACTATTTAAATCTTGTCTGTATAATA   	2	7	0
CTCCGTGTATATGTACTTTGTGGATACAGAGGTGAT	2	38	1
CCTCCATAATATTTAATTATTCGGTAAAATATAAAT	0	249	1
CTTGCAGGACATCTATTTAATGTTAAGGATGGACGG	1	51	0
ATTAAATATTATGGAGGCAGTGGATATAATTTACAT	0	230	0
          ** **  *  *** **
MAP Score: 4.29481

Motif 4
TCTGCTACTCTCCAGATATGATTATTCAGGAT	0	61	1
GATATGATTATTCAGGATAGCATCAGCTTGAG	0	75	1
CCTCTTCTGATTCTGAAAAGCTATTTATATTT	0	275	0
     TATTATACAGACAAGATTTAAATAGTA	2	5	1
ACTTTGTGGATACAGAGGTGATATGCATGTAC	2	52	1
         TTGCTGATGTGTTCATGGTTGCT	3	1	1
TGTTCATGGTTGCTGGTTTGCTGGGAGT    	3	19	1
          * **** *****
MAP Score: 2.83671