AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_fusions007_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243143
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH709	300	GMP synthetase, subunit A
#1	MTH710	102	GMP synthetase, subunit B
#2	MTH1655	78	anthranilate synthase component I
#3	MTH1660	37	tryptophan synthase, subunit alpha 

Motif 1
GCTGATGCTATCCTGAATAATCATATCTGGAGAGT	0	67	0
TAGCAGCCATACCAGAACATAGAAAGCGACAACTG	0	175	1
GACGAGTGCAACCAGAATGTAAATTATATCCACTG	0	214	1
ATCCACTGCCTCCATAATATTTAATTATTCGGTAA	0	241	1
ATTTAATTATTCGGTAAAATATAAATAGCTTTTCA	0	259	1
    ACTGGGACCTGAAGGTACCCACCCTAACACG	1	6	1
ACACCGTCCATCCTTAACATTAAATAGATGTCCTG	1	48	1
TAAATAGATGTCCTGCAAGATAATAAATCAATCAT	1	68	1
CACCTCTGTATCCACAAAGTACATATACACGGAGG	2	37	0
          TCCTGTACATGCATATCACCTCTGT	2	63	0
          *** *** **  * *
MAP Score: 7.27007

Motif 2
TCTTTTTATGAAATGAGTTTAAATCAGGTTGCGCAT	0	26	1
TACTCTCCAGATATGATTATTCAGGATAGCATCAGC	0	66	1
CCCCGCAGGAAGATGTATATGATGTATGCAATTATA	0	122	1
TTTACCGAATAATTAAATATTATGGAGGCAGTGGAT	0	241	0
GGTAAAATATAAATAGCTTTTCAGAATCAGAAGAGG	0	271	1
CCTTAACATTAAATAGATGTCCTGCAAGATAATAAA	1	59	1
TACAGAGGTGATATGCATGTACAGGA          	2	62	1
          * ***  * * *** *
MAP Score: 5.73749

Motif 3
TCCTTCCCCGCAGGAAGATGTATATGATGT	0	117	1
TTATAAGGACCACTAACACGGGTAGCAGCC	0	153	1
AGCAGCCATACCAGAACATAGAAAGCGACA	0	176	1
AAGGTACCCACCCTAACACGGGTCAGAACA	1	21	1
CACCGTCCATCCTTAACATTAAATAGATGT	1	49	1
CCACAAAGTACATATACACGGAGGTACTAT	2	31	0
         TCCTGTACATGCATATCACCT	2	67	0
AACCAGCAACCATGAACACATCAGCAA   	3	7	0
          **********
MAP Score: 2.92786

Motif 4
GAAATGAGTTTAAATCAGGTTGCGCATCTGCTACTCTCCAGAT	0	35	1
TCCAGATATGATTATTCAGGATAGCATCAGCTTGAGTATCAAA	0	71	1
AATTATAAGGACCACTAACACGGGTAGCAGCCATACCAGAACA	0	151	1
GCCATACCAGAACATAGAAAGCGACAACTGCAAGGACGAGTGC	0	180	1
TACCCACCCTAACACGGGTCAGAACACCGTCCATCCTTAACAT	1	25	1
GTCCATCCTTAACATTAAATAGATGTCCTGCAAGATAATAAAT	1	53	1
CCAGCAAACCAGCAACCATGAACACATCAGCAA          	3	0	0
          * **   *      ** * ** *
MAP Score: 1.61245

Motif 5
TCCAGATATGATTATTCAGGATAGCATCAG	0	71	1
GATGTATGCAATTATAAGGACCACTAACAC	0	142	1
ATAAGGACCACTAACACGGGTAGCAGCCAT	0	155	1
ATAATATTTAATTATTCGGTAAAATATAAA	0	254	1
GGTACCCACCCTAACACGGGTCAGAACACC	1	23	1
         TATTATACAGACAAGATTTAA	2	1	1
          **********
MAP Score: 0.457835