AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_fusions010_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243215
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH54	38	unknown
#1	MTH56	89	unknown
#2	MTH57	175	unknown
#3	MTH914	131	unknown

Motif 1
TCACATACCTTCCAGCTAACAGACTACGGCACGGTAT	1	39	1
GCACGGTATACGCAGCCCATCTTTCACTCACC     	1	67	1
CGATTGGAGGTTCAATTCCCTTCTTACGGA       	2	3	0
CTACCATATTCTCAGTTAATTGATCACTTTATGCAGT	2	84	1
GATCACTTTATGCAGTTCTTCTAAAACTATTTTGTTC	2	105	1
GATAATTCCATACAGTTCTCCTTTTAAAGCA      	2	154	1
GCATTTCACACCCAGTTATTCTTTTAAAACTGATCTT	3	14	1
GGCAGAGTACTGCAGTTCTGTGGATTCACATACCTAT	3	58	1
          * ******   *   **
MAP Score: 6.23304

Motif 2
ACAGGGAACTCTCACATACCTTCCAGCTAA	1	28	1
CAGCCCATCTTTCACTCACC          	1	79	1
CGATTGGAGGTTCAATTCCCTTCTTACGGA	2	10	0
  ATCTGCATTTCACACCCAGTTATTCTTT	3	8	1
GTTCTGTGGATTCACATACCTATTTATATA	3	72	1
          **********
MAP Score: 5.71743

Motif 3
GCGTATACCGTGCCGTAGTCTGTTAGCTGG	1	50	0
GAAAAAAGGATGGATTACTTTTTCCTCTCG	2	50	0
GATCACTTTATGCAGTTCTTCTAAAACTAT	2	105	1
GATAATTCCATACAGTTCTCCTTTTAAAGC	2	154	1
       ATCTGCATTTCACACCCAGTTAT	3	3	1
TCCACAGAACTGCAGTACTCTGCCGAGGAG	3	52	0
          **********
MAP Score: 5.31583