AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_fusions010_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243220
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH54	38	unknown
#1	MTH56	89	unknown
#2	MTH57	175	unknown
#3	MTH59	88	unknown
#4	MTH60	176	unknown
#5	MTH61	83	unknown
#6	MTH62	132	molybdenum cofactor biosynthesis A (MoaA) related protein
#7	MTH63	300	conserved protein
#8	MTH914	131	unknown

Motif 1
ACGGTATACGCAGCCCATCTTTCACTCACC     	1	69	1
AGGAAAAAGTAATCCATCCTTTTTTCTTTTCTACC	2	54	1
CTCCAATTCTAAACCCAACTTTTTTTCCTATTTTT	3	11	1
GCTGCCATCGAAAACCTGTTTTTGTGAACTCAGTC	4	60	1
AATTAATTGTCACAGCATGTTATATAAATCTTTTC	4	135	0
ATATTGCAAGAACACCTTTTTATATAATTTTCGAT	5	38	0
CCTCATAGGTCAGACAGAATTTTTTTAGTAATCTT	7	143	1
GCATCTCCACAAGACCTGATTTTATATTCTACTAT	7	243	1
ATCTGCATTTCACACCCAGTTATTCTTTTAAAACT	8	10	1
TGTGGATTCACATACCTATTTATATACGAATTACA	8	76	1
          ** ***   **** *
MAP Score: 7.11123

Motif 2
   GGTGAGTGAAAGATGGGCTGCGTATAC	1	72	0
       TCCGTAAGAAGGGAATTGAACCT	2	3	1
AGAAAAGAAAAAAGGATGGATTACTTTTTC	2	56	0
AAATAGGAAAAAAAGTTGGGTTTAGAATTG	3	14	0
ATAATTTTCGATAGGTCGGGATGTCTTCCT	5	20	0
AATATTATATGAAGGTTGGGATTTC     	5	68	1
ACTTGAAGAGGAGGGTAGGGTTTCACTGTT	7	16	0
ACCCTCCTCTTCAAGTAGGGTCTGGAATGA	7	30	1
GTTGCAAACAACAGGATGGGGGCCTGGTCT	7	207	1
          **********
MAP Score: 6.3828

Motif 3
          ACCGCCGCCTGTTGTTTCCAGTGTTG	0	22	0
TGGGCTGCGTATACCGTGCCGTAGTCTGTTAGCTGG	1	50	0
AGGAAAAAGTAATCCATCCTTTTTTCTTTTCTACCA	2	54	1
TCTCAGGATAATTCCATACAGTTCTCCTTTTAAAGC	2	148	1
CTCCAATTCTAAACCCAACTTTTTTTCCTATTTTTA	3	11	1
        GAAATCCCAACCTTCATATAATATTGCA	5	65	0
TAAAACAGTGAAACCCTACCCTCCTCTTCAAGTAGG	7	13	1
TTTCTTGATCATTCCAGACCCTACTTGAAGAGGAGG	7	32	0
CTGGGGCTGCATACCATGATATGATCATTTCTTGAT	7	59	0
CATGGTATGCAGCCCCAGCCATGAAAAAATTTAGGG	7	77	1
GTAATCTTAGAGCCCCGGATATGGTTTTTTGACGGC	7	170	1
ATGCTGCTTCAGACCAGGCCCCCATCCTGTTGTTTG	7	211	0
    CCCTTAACCCCCTACACACATTATATTGGTGG	7	278	0
TCTGCATTTCACACCCAGTTATTCTTTTAAAACTGA	8	11	1
          *  *** *** *  **
MAP Score: 5.5606

Motif 4
    ACCGCCGCCTGTTGTTTCCAGTGTTG	0	22	0
CAACTTTTTTTCCTATTTTTAAAAATCTTT	3	26	1
GCCATCGAAAACCTGTTTTTGTGAACTCAG	4	63	1
AAAATTTAGGGCCTATTCTTCTACGCCACA	7	102	1
CAGGCCCCCATCCTGTTGTTTGCAACAGCC	7	203	0
TCTCCACAAGACCTGATTTTATATTCTACT	7	246	1
ATTCTTTTAAAACTGATCTTTCTCCTCGGC	8	31	1
GGATTCACATACCTATTTATATACGAATTA	8	79	1
          **********
MAP Score: 4.32151

Motif 5
ATCTCAGGATAATTCCATACAGTTCTCCTT	2	147	1
     ACTCCAATTCTAAACCCAACTTTTT	3	5	1
AAATGAAAAGATTTATATAACATGCTGTGA	4	131	1
ACCTATCGAAAATTATATAAAAAGGTGTTC	5	34	1
         AAATCATATACCCCTCATCAA	6	1	1
AGTTCTGTGGATTCACATACCTATTTATAT	8	71	1
TCACATACCTATTTATATACGAATTACATA	8	83	1
TTTATATACGAATTACATAAAAATGTAACT	8	94	1
          **********
MAP Score: 3.75

Motif 6
TCTTAAGGTATTAAAAGATTTTTAAAAATA	3	39	0
TCACGAAAAATGAAAAGATTTATATAACAT	4	124	1
ACGTTGATGATGAATACATTGATGAGGGGT	6	19	0
CAGATATGGTTGAAAACATGCCAAAATTGA	6	82	1
GCCCCAGCCATGAAAAAATTTAGGGCCTAT	7	88	1
CTAAGATTACTAAAAAAATTCTGTCTGACC	7	150	0
AAGATCAGTTTTAAAAGAATAACTGGGTGT	8	21	0
          **********
MAP Score: 2.13024

Motif 7
     CAAGTGATGAGACAACACTGGAAACAACA	0	5	1
ATCCTGAGATGCTCAGAACAAAATAGTTTTAGAA	2	123	0
CCCCGGTACCTATCAGACAACACTCATCTACACA	4	10	1
TTTTTCGTGACACCAGAAACATATATTTGAAGTA	4	100	0
AAAAATTAATTGTCACAGCATGTTATATAAATCT	4	139	0
     CTGTATTTCAGATAAAAATTAATTGTCAC	4	157	0
AAATCCCAACCTTCATATAATATTGCAAGAACAC	5	58	0
CAGCGGACCACCTCAGAGCAGGATCACCATTAAC	6	47	0
TTCTTGATCATTCCAGACCCTACTTGAAGAGGAG	7	33	0
ATCAAGAAATGATCATATCATGGTATGCAGCCCC	7	59	1
GGCCCTCATAGGTCAGACAGAATTTTTTTAGTAA	7	140	1
GGAGATGCTGCTTCAGACCAGGCCCCCATCCTGT	7	217	0
   ATCTGCATTTCACACCCAGTTATTCTTTTAA	8	7	1
          * ***** ** * *
MAP Score: 1.26985