AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_fusions011_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243237
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH451	132	magnesium chelatase subunit ChlI
#1	MTH452	45	unknown
#2	MTH695	248	conserved protein
#3	MTH1093	96	ABC transporter (ATP-binding
#4	MTH1143	104	biotin synthetase (BioB)
#5	MTH1145	78	conserved protein
#6	MTH1147	38	conserved protein
#7	MTH1149	72	ABC transporter subunit Ycf16

Motif 1
TTAGTAATACTCATCTTTTTTTAGAAATTA	0	73	1
TCCATGCGTGTCATGTTTTTTCATAAACTC	1	18	0
CAGATGACTCTCAGGTCCTTCATTAGAATC	2	43	1
ATCTAAGTGTTCTCCTTTTCCAGTCCTTCA	2	70	1
TTCCAGTCCTTCAGCTTCCCTTTCTAAGTG	2	87	1
GTCATTTTAACCAGCTTTTCATAGCCACTT	2	112	0
AATGACAATCTCTGCTCTTTATGCTCCATT	2	136	1
AACACCAGTTTCAGCTGCTTGGGATTGAAA	4	81	0
CCTGTTTTTCTCTGCTGTTCTTTGATGGGG	5	13	0
    TTTTGATCAGCTGTTTCCTGTTATAT	5	62	0
TCCCTTAAGTTCATGCGTTCCATGTAC   	6	7	0
        TTTCTGCTCTTTCCCTTAAGTT	6	26	0
ACCACCTATTTCTTCCTTTTAATAAATTAT	7	45	0
          **********
MAP Score: 13.6864

Motif 2
ATCATTATTTAATAATTTCTAAAAAAAGATGAG	0	82	0
GGAGCTTAAAAATAATTTAATGAAAAAGGGAGT	2	11	0
GCATCACTATAACAATTTATACTATCAGGGATA	3	26	1
TATCAGGGATAAAAATCTAACCATAATACCCGA	3	48	1
AAAATCCCAGAAAAATTTATTTATTTTTTTATC	4	17	1
TTTTTATCCAAGTAATTTTTACACTTCAATTTA	4	42	1
 GATTGGCATAGGAATCTATTTATTGTATCCTA	7	9	1
GTATCCTACGAATAATTTATTAAAAGGAAGAAA	7	34	1
          ** *******  *
MAP Score: 5.5421

Motif 3
AGAGTCATCTGGAGCTTAAAAATAATTTAATGAAA	2	19	0
ATGACTCTCAGGTCCTTCATTAGAATCTAAGTGTT	2	46	1
TTAACGGAATGGAGCATAAAGAGCAGAGATTGTCA	2	138	0
TGACTTTTATGGATCTTTAACGGAATGGAGCATAA	2	154	0
      TCATGCACCCTCCACAGCATCACTATAAC	3	4	1
         AGGCCCCATCAAAGAACAGCAGAGAA	5	1	1
GAGAAAAACAGGTCCATAAACAGTATGAACCATAT	5	31	1
          ** ** * ** ** *
MAP Score: 5.23046

Motif 4
TATTACTAATATGTACCTGACTGTATTAAAAG	0	50	0
CATGACACGCATGGAGGTGTGA          	1	33	1
TGAGAGTCATCTGGAGCTTAAAAATAATTTAA	2	24	0
GATTCTAATGAAGGACCTGAGAGTCATCTGGA	2	41	0
AGGGAAGCTGAAGGACTGGAAAAGGAGAACAC	2	76	0
AATGGAGCATAAAGAGCAGAGATTGTCATTTT	2	134	0
GTTGACTTTTATGGATCTTTAACGGAATGGAG	2	159	0
TTTCAATCCCAAGCAGCTGAAACTGGTGTTAA	4	81	1
CATACTGTTTATGGACCTGTTTTTCTCTGCTG	5	26	0
CATAAACAGTATGAACCATATAACAGGAAACA	5	45	1
AACTTAAGGGAAAGAGCAGAAA          	6	26	1
          ******* ** *
MAP Score: 2.94624

Motif 5
CAGGTCCTTCATTAGAATCTAAGTGTTCTCCTTTTCCAG	2	54	1
CTAAGTGGCTATGAAAAGCTGGTTAAAATGACAATCTCT	2	110	1
GCTGGTTAAAATGACAATCTCTGCTCTTTATGCTCCATT	2	127	1
TTAAGTTATAATAGGAACCTCCATCATATAATCATCC  	2	221	1
CAGCATCACTATAACAATTTATACTATCAGGGATAAAAA	3	24	1
ACTATCAGGGATAAAAATCTAACCATAATACCCGATGCT	3	46	1
GGAAAATCCCAGAAAAATTTATTTATTTTTTTATCCAAG	4	15	1
   GATTGGCATAGGAATCTATTTATTGTATCCTACGAA	7	7	1
          ** * ** **   *  * *
MAP Score: 1.2059