AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_fusions012_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243275
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH237	158	magnesium chelatase subunit
#1	MTH318	82	cobalamin biosynthesis protein N
#2	MTH319	93	unknown
#3	MTH320	300	unknown
#4	MTH514	113	cobalamin biosynthesis protein N
#5	MTH515	50	unknown

Motif 1
ATTATTTTATGGGTGGCCCTGATCCATCCGA	0	17	1
TGTAATACCTGGGTGTTCTGGAAAGCTCGGA	0	43	0
      AAAGAGGCATCCCTCCTGCGCTGTG	2	4	1
TATGCAACGTGGGCATCACTCTAGGATTCTT	3	78	1
TATCTTTCATGGATATCCCTGATTTTCGCGT	3	146	1
TTTTCGCGTCGGGTACTCCTGAGCGAAGGAT	3	168	1
TGTCATTGCCGGGTGTCCCTCCGAGGAGGT 	4	9	0
ATGGTACCGGGGGTGTCATTGCCGGGTGTCC	4	22	0
  GTTCTCCAGGTTCTCCCTGGCAGCTGTTC	4	94	0
GACCGCTTCAGGGCATCCGGGGGCTATGAGG	5	12	1
          **** ******
MAP Score: 15.1258

Motif 2
AAGCTCGGATGGATCAGGGCCACCCATAAAATAA	0	18	0
TGGACACAGCGCAGGAGGGATGCCTCTTT     	2	5	0
ATGGGATTATGCAACGTGGGCATCACTCTAGGAT	3	71	1
CCTGATTTTCGCGTCGGGTACTCCTGAGCGAAGG	3	163	1
GGGTGTCATTGCCGGGTGTCCCTCCGAGGAGGT 	4	9	0
GTTCTCAATGGTACCGGGGGTGTCATTGCCGGGT	4	26	0
CTATGCCCTTGCATCAGGAACAGCTGCCAGGGAG	4	77	1
        GTTCTCCAGGTTCTCCCTGGCAGCTG	4	97	0
    GTGACCGCTTCAGGGCATCCGGGGGCTATG	5	6	1
TGTTGCAGTGGCCTCATAGCCCCCGGATGCCCTG	5	20	0
          **  ***** * **
MAP Score: 10.2006

Motif 3
CTCGGATGGATCAGGGCCACCCATAAAATAATA	0	16	0
ATCCGAGCTTTCCAGAACACCCAGGTATTACAT	0	42	1
GATTTAAATATCGGGCACTCTAAATTCTTTACG	0	124	1
TGGGCATCACTCTAGGATTCTTAACGGATCTTT	3	87	1
GACGCGAAAATCAGGGATATCCATGAAAGATAA	3	145	0
GATTTTCGCGTCGGGTACTCCTGAGCGAAGGAT	3	166	1
TCTCTAAAACTCTGGACCTCTCCAGTCTCCTCA	3	237	1
CCCGGTACCATTGAGAACACCTACATTGCAAGC	4	42	1
TGCCCTTGCATCAGGAACAGCTGCCAGGGAGAA	4	80	1
 GTGACCGCTTCAGGGCATCCGGGGGCTATGAG	5	9	1
          ** ** ***** *
MAP Score: 7.7312

Motif 4
AAAACTATTATTTTATGGGTGGCCCTGATCCATCCGAG	0	11	1
TCCATCCGAGCTTTCCAGAACACCCAGGTATTACATTC	0	39	1
GATTCTTATCTTTCATGGATATCCCTGATTTTCGCGTC	3	140	1
AGTCGATCCTTCGCTCAGGAGTACCCGACGCGAAAATC	3	166	0
      ACCTCCTCGGAGGGACACCCGGCAATGACACC	4	4	1
GAGGGACACCCGGCAATGACACCCCCGGTACCATTGAG	4	19	1
TCAGGAACAGCTGCCAGGGAGAACCTGGAGAAC     	4	90	1
     GTGACCGCTTCAGGGCATCCGGGGGCTATGAGG	5	5	1
          *  *   ** * *** **
MAP Score: 6.7084

Motif 5
TTTTATGGGTGGCCCTGATCCATCCGAGCTTTCCAGAA	0	21	1
GGGTGTCATTGCCGGGTGTCCCTCCGAGGAGGT     	4	5	0
CCTGATTTTCGCGTCGGGTACTCCTGAGCGAAGGATCG	3	163	1
ACAGGCAGAAGCCTCACATAAAATAGAGTGAACCAACA	3	24	1
TGTTGCAGTGGCCTCATAGCCCCCGGATGCCCTGAAGC	5	16	0
AGGAACAGCTGCCAGGGAGAACCTGGAGAAC       	4	92	1
CGGCAATGACACCCCCGGTACCATTGAGAACACCTACA	4	29	1
          GGCTCGAAGAATTCACAGGCAGAAGCCT	3	0	1
TCAGTGAGGAGACTGGAGAGGTCCAGAGTTTTAGAGAT	3	236	0
          *** *  *  *  * ***
MAP Score: 5.79645

Motif 6
       AAAAACTATTATTTTATGGGTGGCCCTGATCCAT	0	3	1
GCCCTGATCCATCCGAGCTTTCCAGAACACCCAGGTATTAC	0	32	1
ACATTCTAACAGCTAATTTTTAAAGTTGTTCATACTTTTAA	0	71	1
AGATTTATATACCTCCTTTTTTAAGTTTTACTTGAAATATT	1	23	1
AGCCCACTTCAGCTGTTTTTTTTTCTAATTCCGTGGACACA	2	31	0
GCCTGTTGGTTCACTCTATTTTATGTGAGGCTTCTGCCTGT	3	24	0
TAGGATTCTTAACGGATCTTTCAACAACATCTGATCTTCTG	3	99	1
ATCTTCTGGATTCTTATCTTTCATGGATATCCCTGATTTTC	3	132	1
          * *   * *** ***     *
MAP Score: 3.28659

Motif 7
TGATCCATCCGAGCTTTCCAGAACACCCAGG	0	36	1
TTTAAATATCGGGCACTCTAAATTCTTTACG	0	126	1
   AAAGAGGCATCCCTCCTGCGCTGTGTCC	2	7	1
AGCTGAAGTGGGCTAGTCCAGGGGATAACAA	2	58	1
GCAACGTGGGCATCACTCTAGGATTCTTAAC	3	81	1
TTTTCGCGTCGGGTACTCCTGAGCGAAGGAT	3	168	1
TCATATGACTGAGATCTCTAAAACTCTGGAC	3	223	1
TAAAACTCTGGACCTCTCCAGTCTCCTCACT	3	241	1
        GTGACCGCTTCAGGGCATCCGGG	5	2	1
          **** ******
MAP Score: 1.67085