AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_fusions014_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243336
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH155	228	rubredoxin
#1	MTH1350	108	flavoprotein AI

Motif 1
GGGTCCTGCAGATATTATTTTTTTGAGATTA	0	31	1
TTATTTTTTTGAGATTAATCTGGACGTATAT	0	45	1
AATCTGGACGTATATTATTCTTTGCTTCAGA	0	61	1
GTGAATTTTATAGATAATTTTAAATTTTAGG	0	188	1
  GCTATATCTTTATTACTCTCCTAAAATTT	0	209	0
TCTGAAGGACTATATTACTGTTTCAATACCA	1	24	1
TACGAACTTCTATATAATTTTTTCTGTTCCA	1	55	0
          ******* ***
MAP Score: 8.51324

Motif 2
    AACTCTTTTTTAAGGACCTCCGGGTCCTG	0	6	1
GGACCTCCGGGTCCTGCAGATATTATTTTTTTG	0	23	1
ATATTATTCTTTGCTTCAGATCTTCTTTTTATC	0	72	1
TTTTAGGAGAGTAATAAAGATATAGC       	0	212	1
CAGTAATATAGTCCTTCAGACATAACATGGGCC	1	11	0
          TTAGTTCGTATATCATCGAATGT	1	95	0
          **  * *******
MAP Score: 2.23254

Motif 3
CCGGGTCCTGCAGATATTATTTTTTTGAGATTAA	0	29	1
TTAATCTGGACGTATATTATTCTTTGCTTCAGAT	0	59	1
TTCTTTGCTTCAGATCTTCTTTTTATCAGCAGGT	0	78	1
CGGCATACATCTGATAATTTGTTTAATGGGCTGC	0	126	0
AAAGCTTTCGCAGTGAATTTTATAGATAATTTTA	0	176	1
TACCATGGAACAGAAAAAATTATATAGAAGTTCG	1	50	1
          * ** *** ** **
MAP Score: 0.823478