AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_fusions015_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243346
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH700	110	conserved protein
#1	MTH702	27	acetyl-CoA synthetase related protein
#2	MTH1603	63	acetyl-CoA synthetase

Motif 1
TAAGATGAGAAACTTTATTAAGGGAAGAGAC	0	36	1
AGAGACATTTATCATTAATAATCATTATTAA	0	61	1
ATCATTAATAATCATTATTAATTTTTCCTGA	0	71	1
CATGAATTAAAAAAATATTAACAGAAGGGGG	2	42	1
          * *********
MAP Score: 3.68266

Motif 2
AGAGACATTTATCATTAATAATCATTATTA	0	61	1
ATTAATAATCATTATTAATTTTTCCTGACG	0	74	1
AACTATTTAAATCATGAATTAAAAAAATAT	2	30	1
          **********
MAP Score: 1.94825