AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_fusions015_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243347
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH700	110	conserved protein
#1	MTH702	27	acetyl-CoA synthetase related protein
#2	MTH1603	63	acetyl-CoA synthetase

Motif 1
TGTGGAACTTAAACATTTAAGATGAGAAACTT	0	19	1
TTAAGATGAGAAACTTTATTAAGGGAAGAGAC	0	35	1
TTAAGGGAAGAGACATTTATCATTAATAATCA	0	53	1
TATCATTAATAATCATTATTAATTTTTCCTGA	0	70	1
CAACTATTTAAATCATGAATTAAAAAAATATT	2	29	1
TCATGAATTAAAAAAATATTAACAGAAGGGGG	2	41	1
          ******** * *
MAP Score: 2.3917