AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_fusions016_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243348
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH170	141	phosphoribosylaminoimidazolesuccinocarboxamide synthase
#1	MTH600	300	conserved protein
#2	MTH602	90	precorrin-3 methylase
#3	MTH1014	127	conserved protein

Motif 1
TCAGATTCATGCTTCTTAGGGTGAAATA       	0	3	0
GATTTCGCAAGATTATATAACTGAATCGCAATATA	0	36	1
ACTCTCCAATACTTATATAGGTGTAAATTCTATTA	0	76	0
TGGAAATTCCGCTGATGAAAGAGAAAACCTCACAG	1	109	1
GCTCAAAAGAAGACATGAAGGAGAATATGAATACC	1	190	1
ATCAGGGGATGATAATCTGAGTGGAAAGGAAACTC	2	36	1
GGAAACTCGAGATAATAAAACAGGAAGTGTCATAT	2	63	1
CAATTTATTTATTTATTAAACTGTAATTAAAGCCA	3	37	1
TATATTTACTATTAATAAAACATCATGGTTAACAG	3	81	0
AGTAAATATAGTTAATAAAGGAGGACTTTGT    	3	106	1
          * * ** **** * *
MAP Score: 9.34686

Motif 2
TTCATGCTTCTTAGGGTGAAATA       	0	3	0
CAATACTTATATAGGTGTAAATTCTATTAT	0	75	0
     CAAGGATAAGGTGAAATTGAGATAC	1	5	1
TTTCTCTTTCATCAGCGGAATTTCCAGTCA	1	105	0
GAAGACCGAGATAGGTTGAAAGGTGGGCAT	1	239	1
AAAAAAGATAATCAGGGGATGATAATCTGA	2	26	1
ACCCCTCTTAATCAGGGGAACCACAATTTA	3	14	1
          **********
MAP Score: 5.83237

Motif 3
GAATTTGAGTATGAAATCCTGATCAACTCTCC	0	104	0
GCTGATGAAAGAGAAAACCTCACAGGAATCCC	1	119	1
AAAACCTCACAGGAATCCCTGCTGACTGAATC	1	132	1
AACTGCTCAAAAGAAGACATGAAGGAGAATAT	1	186	1
GAAGGAGAATATGAATACCGGATTCCATTCAC	1	206	1
AAAGGTGGGCATAAAGACATCAGCAATAAATA	1	257	1
ATCAGCAATAAATACAACCTCCCACAGATAAT	1	275	1
AACTCGAGATAATAAAACAGGAAGTGTCATAT	2	66	1
ATTTACTATTAATAAAACATCATGGTTAACAG	3	81	0
          ACAAAGTCCTCCTTTATTAACT	3	115	0
          * *** ******
MAP Score: 5.27786

Motif 4
GAATTTGAGTATGAAATCCTGATCAACTCTCCA	0	103	0
AGAGGATAGAATACTATCCTGCTTCGGGATACA	1	54	1
GGAATTTCCAGTCAGTCCCTGCAAGCATATGGT	1	86	0
AAAACCTCACAGGAATCCCTGCTGACTGAATCC	1	132	1
GAAGGAGAATATGAATACCGGATTCCATTCACT	1	206	1
     AAATGATGGGCCCCGGAAAAAAGATAAT	2	5	1
CACTCAGATTATCATCCCCTGATTATCTTTTTT	2	26	0
AAATAAATTGTGGTTCCCCTGATTAAGAGGGGT	3	14	0
          ***   *******
MAP Score: 3.47292

Motif 5
ATCAGATTCATGCTTCTTAGGGTGAAATA     	0	5	0
TGATTTCGCAAGATTATATAACTGAATCGCAATA	0	35	1
AACTCTCCAATACTTATATAGGTGTAAATTCTAT	0	78	0
AGGGACTGACTGGAAATTCCGCTGATGAAAGAGA	1	99	1
AATACGATGGTGGAAATGGAACTGCTCAAAAGAA	1	167	1
TGTGGGAGGTTGTATTTATTGCTGATGTCTTTAT	1	267	0
AATCAGGGGATGATAATCTGAGTGGAAAGGAAAC	2	35	1
AGGAAACTCGAGATAATAAAACAGGAAGTGTCAT	2	62	1
ACAATTTATTTATTTATTAAACTGTAATTAAAGC	3	36	1
TAGTAAATATAGTTAATAAAGGAGGACTTTGT  	3	105	1
          ** ****   ****
MAP Score: 3.17007

Motif 6
CCTAAGAAGCATGAATCTGATTTCGCAAGA	0	18	1
GTATTGGAGAGTTGATCAGGATTTCATACT	0	99	1
         CAAGGATAAGGTGAAATTGAG	1	1	1
AGACATGAAGGAGAATATGAATACCGGATT	1	200	1
CCGGAAAAAAGATAATCAGGGGATGATAAT	2	22	1
ATCAGGGGATGATAATCTGAGTGGAAAGGA	2	36	1
GGAAACTCGAGATAATAAAACAGGAAGTGT	2	63	1
ATAGACCCCTCTTAATCAGGGGAACCACAA	3	10	1
TATATTTACTATTAATAAAACATCATGGTT	3	86	0
AGTAAATATAGTTAATAAAGGAGGACTTTG	3	106	1
          **********
MAP Score: 2.1316