AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_fusions017_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944243383
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH736	133	conserved protein
#1	MTH1107	107	oxaloacetate decarboxylase, alpha subunit 
#2	MTH1496	194	amidase
#3	MTH1917	189	biotin carboxylase

Motif 1
TGAATTCAATCAGCCCTGTATTTTGAGGGTATTGAGAATTCT	0	20	1
ATTAATACATCTGCTGTGTATTTAAGGAAGTTCCTACTATGT	1	38	1
AAGGAAGTTCCTACTATGTATATAAAGAATCTAATTGATCTC	1	61	1
GGTCAATCTACCAATCTTTAAATATTGAACATCTCACATTTA	2	14	1
ATGGCTGTCCCGGCGGTCCATGGACCGGAAACTCCACCCTCG	2	98	1
GAAACTCCACCCTCGAGGCAGTCATGGCAGCTATTAAGGTTG	2	125	1
TTACGGTAACCGGGTTTGCATTGATAGTAGATAGGAGAGAGA	3	52	0
CCCATGTCATCCACATGGCAGTTACTGTAACTCAAGTGGTAT	3	97	1
ATTGAATGAACCTCTTTTTAAGCATACCACTTGAGTTACAGT	3	120	0
          *  *  ****   *  * *  *
MAP Score: 5.10075

Motif 2
GTTGAATTCAATCAGCCCTGTATTTTGAGGGTA	0	18	1
GAATTAATACATCTGCTGTGTATTTAAGGAAGT	1	36	1
GAGATCAATTAGATTCTTTATATACATAGTAGG	1	70	0
AATATTGAACATCTCACATTTATTAGTGTTGGA	2	34	1
CAACCTTAATAGCTGCCATGACTGCCTCGAGGG	2	134	0
ATTAAGGTTGATCAGACTTATATCTCACTTCAA	2	157	1
TCTCTCTCCTATCTACTATCAATGCAAACCCGG	3	52	1
GGTTCATTCAATATACTATATATCTGTTAAAAC	3	150	1
          **** ** * ***
MAP Score: 3.52185

Motif 3
GGTCCATGGACCGCCGGGACAGCCATGACAGTACTCATC	2	85	0
GGAAACTCCACCCTCGAGGCAGTCATGGCAGCTATTAAG	2	124	1
   GCAGCATCTCAGGGCTCATCCATATCCCCCAAGATA	3	7	1
ATCCATATCCCCCAAGATACCTCCTTCTCTCTCCTATCT	3	27	1
ACCGTAAGTCCCCATGTCATCCACATGGCAGTTACTGTA	3	87	1
GTTACTGTAACTCAAGTGGTATGCTTAAAAAGAGGTTCA	3	117	1
          ***  *   **  ***  *
MAP Score: 3.34404

Motif 4
   CGTGACCCTCTCATGAGATCAATTAGA	1	90	0
CGGATGAGTACTGTCATGGCTGTCCCGGCG	2	83	1
ACCCTCGAGGCAGTCATGGCAGCTATTAAG	2	133	1
     GCAGCATCTCAGGGCTCATCCATAT	3	5	1
TGCCATGTGGATGACATGGGGACTTACGGT	3	87	0
GTTACAGTAACTGCCATGTGGATGACATGG	3	98	0
          **********
MAP Score: 3.02737

Motif 5
CACGGATGAGTACTGTCATGGCTGTCCCGGCG	2	81	1
CCACCCTCGAGGCAGTCATGGCAGCTATTAAG	2	131	1
CTCTCCTATCTACTATCAATGCAAACCCGGTT	3	55	1
CAAACCCGGTTACCGTAAGTCCCCATGTCATC	3	76	1
CCACTTGAGTTACAGTAACTGCCATGTGGATG	3	104	0
          *** **** ***
MAP Score: 1.35238