AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_operons012_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944244468 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH170_MTH171 141 MTH170: phosphoribosylaminoimidazolesuccinocarboxamide synthase, MTH171: glutamine-fructose-6-phosphate transaminase #1 MTH187 142 conserved protein #2 MTH189 99 unknown #3 MTH413 300 conserved protein #4 MTH648 65 ribosomal protein L37 #5 MTH649 300 conserved protein #6 MTH861 73 conserved protein #7 MTH1202 236 proteasome, beta subunit #8 MTH1203 69 cleavage and polyadenylation specificity factor #9 MTH1204 46 phosphoribosylformylglycinamidine cyclo-ligase #10 MTH1375 22 isoleucyl-tRNA synthetase #11 MTH1376 65 conserved protein #12 MTH1396 28 thiamine monphosphate kinase #13 MTH1398 269 conserved protein #14 MTH1445 64 glycinamide ribonucleotide synthetase #15 MTH1522 116 nitrogenase alpha chain (NifD) related protein Motif 1 TATGAAATCCTGATCAACTCTCCAATACTT 0 97 0 AACCCGCTGTTGAACAGCTCATTGAGGCCC 1 30 1 CAGGGCTGCTGCGGCCCCCCTCCTAACAGA 1 77 0 CCAGAGCAGTTGAACCCCTCATAAAGGCT 1 123 1 CAGTGTGCATTCAACCTCCCTGAGGTCATT 2 56 1 GTTCATGCAGGGATCACCCCCCTTGATTCC 3 231 1 TCTGTAAAGTTGATCCACCCTTCCCCTTAC 4 18 0 GTCCGCCCTGGGATCCCCCCATCCATGAGA 5 139 0 ATCCATTCCAGGGTCCGCCCTGGGATCCCC 5 151 0 GTGAACACCTCAAGATTATAA 6 1 1 TAACCGTTCTTCAACCCCTCAGGAAGCCCC 7 41 1 TATGTCCATGGGGACAGCCCTTTGCAGGGT 7 135 1 CTTATTTATATCATCACCCCAAAACCATAA 11 36 1 ********** MAP Score: 16.9098 Motif 2 ATCTGAAATAGGGGAACCCGCTGTTGAACAGCT 1 16 1 AGGGGGGCCGCAGCAGCCCTGGGTAACATTGGA 1 86 1 GGGTAACATTGGAGATCCCAGAGCAGTTGAACC 1 106 1 AGTGTGCATTCAACCTCCCTGAGGTCATTTCCT 2 57 1 CATCAAGGAACCACAGCCCTCTGAACACAAATT 3 42 1 ATAAAGACCTCCAGAACCCACAGGGGCCTCATC 3 93 1 CAGTTTTCGACAGGATCCCGGCCCAGGTTTTTA 3 147 1 TCATGGATGGGGGGATCCCAGGGCGGACCCTGG 5 141 1 TATAATAGATGGGGCTTCCTGAGGGGTTGAAGA 7 48 0 ATGTCCATGGGGACAGCCCTTTGCAGGGTTAAA 7 136 1 AAAACCAGTCCTGGATCCCATTGTGTTTTTATG 7 187 0 ATTTAAATCACTGCCTCCCTGAGGGAATAATAA 13 173 0 * ******* * * MAP Score: 15.9925 Motif 3 ATCTCCAATGTTACCCAGGGCTGCTGCGGCCCC 1 89 0 TCCGGTTCAGTGTGATGGGGTGAAGGGTTTAC 2 9 1 GGTGAAGGGTTTACCATGGCCGGACCTTCAGTG 2 28 1 GGAAGGAAATGACCTCAGGGAGGTTGAATGCAC 2 60 0 GGGGTTACTGAAAGATGGAAGGAAATGACCTC 2 77 0 AGAGGGCTGTGGTTCCTTGATGGATACTCTGAA 3 31 0 CCTCATCACAGAATCATGGATTGAAGGCCAGTT 3 119 1 TTTCTCCTCAGGTTCATGCAGGGATCACCCCCC 3 220 1 ATTTAACCCGGAATCAAGGGGGGTGATCCCTGC 3 237 0 GAGTTTAAATGAGTCAATGATGGTAAAGCAGAT 5 49 0 CCACATGCATCTCTCATGGATGGGGGGATCCCA 5 128 1 TGGATGGGGGGATCCCAGGGCGGACCCTGGAAT 5 144 1 AATAGATGGGGCTTCCTGAGGGGTTGAAGAACG 7 45 0 AAACACAATGGGATCCAGGACTGGTTTTTTATT 7 192 1 AATTTCTCCTGAACTGGATGTATATA 11 3 1 TCTTTATTATTCCCTCAGGGAGGCAGTGATTTA 13 170 1 CCATGATTCATATCCATGGATTGATTAATATTC 15 31 0 CCATGGATATGAATCATGGGATGGATTTGCATC 15 45 1 CTGTGGTTATGCAACATGGCTGGAACCATGATG 15 74 0 * ******* ** MAP Score: 14.5701 Motif 4 TATTTCACCCTAAGAAGCATGAATCTGATTTCG 0 7 1 AGCCTTTATGAGGGGTTCAACTGCTCTGG 1 123 0 TCCGGTTCAGTGTGATGGGGTGAAGGGTTTACC 2 7 1 GGGGTTACTGAAAGATGGAAGGAAATGACCTCA 2 76 0 GGCCTCATCACAGAATCATGGATTGAAGGCCAGTTT 3 117 1 TCTTTCTCCTCAGGTTCATGCAGGGATCACCCCCCT 3 218 1 AAATTTAACCCGGAATCAAGGGGGGTGATCCCTGCA 3 236 0 ATTTAATTGTAAGGGGAAGGGTGGATCAACTTTAC 4 9 1 ACATGCATCTCTCATGGATGGGGGGATCCCAGGGCG 5 130 1 ATAGATGGGGCTTCCTGAGGGGTTGAAGAACGGTTA 7 41 0 ATGGGGACAGCCCTTTGCAGGGTTAAATGAAAACCC 7 142 1 TATCCAGCTGAGGGAGAAACAC 10 3 1 ATTATTAATTCTTTGTGCTGGAGAAAATGAATATGG 13 73 1 TAAAAAGTAGCTGCGAGCAAGAGGGATCTTTATTAT 13 144 1 TTATTATTCCCTCAGGGAGGCAGTGATTTAAATATC 13 173 1 TCCCATGATTCATATCCATGGATTGATTAATATTCA 15 30 0 * ** ******* MAP Score: 12.8627 Motif 5 TATTTCACCCTAAGAAGCATGAATC 0 3 1 AGAGCAGTTGAACCCCTCATAAAGGCT 1 125 1 TGGTAAACCCTTCACCCCATCACACTGAACCG 2 12 0 ATGGAAGGAAATGACCTCAGGGAGGTTGAATG 2 63 0 AGGTCTTTATATCCCCTGAGAACCCTTAAATT 3 71 0 AAGGGGGGTGATCCCTGCATGAACCTGAGGAG 3 223 0 TGATCCACCCTTCCCCTTACAATTAAAT 4 6 0 CCGCCCTGGGATCCCCCCATCCATGAGAGATG 5 135 0 GTGAACACCTCAAGATTATAATTAT 6 3 1 ATTCCTTTTAATGACCGGATAACCGTTCTTCA 7 22 1 ACCGTTCTTCAACCCCTCAGGAAGCCCCATCT 7 43 1 TAAATCACCACTAAAGAATAGTTTA 9 31 0 TATTTATATCATCACCCCAAAACCATAAACCA 11 38 1 AATATCACCAAATGAAAATTAAGTA 13 3 1 TAAATATCAGATGACCGTATGATTTAATTATA 13 201 1 ****** ** ** MAP Score: 9.33731 Motif 6 GCTGCTGCGGCCCCCCTCCTAACAGATTTGTCA 1 70 0 GGGGCCGCAGCAGCCCTGGGTAACATTGGAGAT 1 89 1 AGAGCAGTTGAACCCCTCATAAAGGCT 1 125 1 GTGCATTCAACCTCCCTGAGGTCATTTCCTTCC 2 60 1 CAAGGAACCACAGCCCTCTGAACACAAATTTAA 3 45 1 AGGTCTTTATATCCCCTGAGAACCCTTAAATTT 3 70 0 CAGCGAATTCAAACCCTCTGCATACAGATATGC 3 185 0 ATGCAGGGATCACCCCCCTTGATTCCGGGTTAA 3 235 1 ATTTATTACCCCTCCCCGGTAATAGATAAACGG 3 268 1 ATTCCAGGGTCCGCCCTGGGATCCCCCCATCCA 5 144 0 ACCGTTCTTCAACCCCTCAGGAAGCCCCATCTA 7 43 1 GTTTACTGATATTCCCTGTTTTTTAGAAGTGAT 8 43 1 TAAATCACTGCCTCCCTGAGGGAATAATAAAGA 13 170 0 ** ***** * ** MAP Score: 9.0086 Motif 7 ATTTAACCCGGAATCAAGGGGGGTGATCCCTGC 3 237 0 AATAGATGGGGCTTCCTGAGGGGTTGAAGAACG 7 45 0 TCCGGTTCAGTGTGATGGGGTGAAGGGTTTAC 2 9 1 TGACAAATCTGTTAGGAGGGGGGCCGCAGCAGC 1 70 1 TAATGGTTTATGGTTTTGGGGTGATGATATAAA 11 40 0 TTTATAATTATAATCTTGAGGTGTTCAC 6 5 0 GGAAGGAAATGACCTCAGGGAGGTTGAATGCAC 2 60 0 TGGATGGGGGGATCCCAGGGCGGACCCTGGAAT 5 144 1 CCATGGATATGAATCATGGGATGGATTTGCATC 15 45 1 CATAACCACAGACATTTGAGGTGACGTAAT 15 96 1 CCTTAAATTTGTGTTCAGAGGGCTGTGGTTCCT 3 47 0 TCTTTATTATTCCCTCAGGGAGGCAGTGATTTA 13 170 1 AAGACCTCCAGAACCCACAGGGGCCTCATCACA 3 96 1 ACAAATTTAAGGGTTCTCAGGGGATATAAAGAC 3 68 1 TTTTATTATTTTTATTAGAGGTGTATCT 7 218 1 AGCCTTTATGAGGGGTTCAACTGCT 1 127 0 TCAGATTCATGCTTCTTAGGGTGAAATA 0 5 0 ATCTCCAATGTTACCCAGGGCTGCTGCGGCCCC 1 89 0 GTTTATCTATTACCGGGGAGGGGTAATAAATTT 3 266 0 GCGCATATCTGTATGCAGAGGGTTTGAATTCGC 3 183 1 CCTTAAACTATTCTTTAGTGGTGATTTA 9 28 1 ATTTAATTGTAAGGGGAAGGGTGGAT 4 3 1 CAGATTAACTGATTTTAAGGAGGATTAGAAC 4 44 1 GATCCCCCCATCCATGAGAGATGCATGTGGTGC 5 125 0 CTCAATGAGCTGTTCAACAGCGGGTTCCCCTAT 1 23 0 ACTTTTTAATGTGTTATGGGCGTCCTTTAGTCC 13 119 0 * ** ******* MAP Score: 8.36047 Motif 8 AGGGCCTCAATGAGCTGTTCAACAGCGGGTTCC 1 28 0 AAATCTGTTAGGAGGGGGGCCGCAGCAGCCCTG 1 74 1 AGCCTTTATGAGGGGTTCAACTGCTCTGGGA 1 121 0 CGGTTCAGTGTGATGGGGTGAAGGGTTTACCAT 2 12 1 TAAAAACCTGGGCCGGGATCCTGTCGAAAACTG 3 147 0 CTCAGGTTCATGCAGGGATCACCCCCCTTGATT 3 226 1 AATTGTAAGGGGAAGGGTGGATCAACTTTACAG 4 14 1 CATCTCTCATGGATGGGGGGATCCCAGGGCGGA 5 135 1 TTCCTTTTAATGACCGGATAACCGTTCTTCAAC 7 23 1 TGGGGCTTCCTGAGGGGTTGAAGAACGGTTATC 7 39 0 *** *** *** * MAP Score: 8.03282 Motif 9 TGAAATAGGGGAACCCGCTGTTGAACAGCTCAT 1 19 1 ATCTCCAATGTTACCCAGGGCTGCTGCGGCCCC 1 89 0 TAACATTGGAGATCCCAGAGCAGTTGAACCCCT 1 109 1 GGAAGGAAATGACCTCAGGGAGGTTGAATGCAC 2 60 0 AAGACCTCCAGAACCCACAGGGGCCTCATCACA 3 96 1 TTTTCGACAGGATCCCGGCCCAGGTTTTTACAG 3 150 1 ATTTAACCCGGAATCAAGGGGGGTGATCCCTGC 3 237 0 TTAAATTTATTACCCCTCCCCGGTAATAGATAA 3 264 1 TGGATGGGGGGATCCCAGGGCGGACCCTGGAAT 5 144 1 AATAGATGGGGCTTCCTGAGGGGTTGAAGAACG 7 45 0 AACACAATGGGATCCAGGACTGGTTTTTTATTA 7 193 1 TCTTTATTATTCCCTCAGGGAGGCAGTGATTTA 13 170 1 CCATGGATATGAATCATGGGATGGATTTGCATC 15 45 1 TTTGCATCATGGTTCCAGCCATGTTGCATAACC 15 70 1 ** ***** * ** MAP Score: 7.83896 Motif 10 ATTTACACCTATATAAGTATTGGAGAGTTG 0 83 1 CTTTTAAAGAATTTGAGTATGAAATCCTGA 0 114 0 TTCTACTAATATATAAGTTTTCTTGCACTG 5 195 0 AGAATAGAAAAATGAAGTATCTGATTGGAA 5 221 1 CGTTAGTTAGATTTAAATATAATCCGGCTA 5 262 1 GTGATGATATAAATAAGTATATACATCCAG 11 23 0 ACCAAATGAAAATTAAGTATTACAGATATA 13 16 1 TATTACAGATATAAAAATATTACCTAAATA 13 33 1 CCTAAATATTAATAAAGTATTATTAATTCT 13 55 1 GTGCTGGAGAAAATGAATATGGACCCATTT 13 87 1 GGAGGCAGTGATTTAAATATCAGATGACCG 13 188 1 TGACCGTATGATTTAATTATAATGAACCAA 13 212 1 GTAAGCTTCTAAATGAATATTAATCAATCC 15 17 1 ********** MAP Score: 6.9302 Motif 11 ACAAATCTGTTAGGAGGGGGGCCGCAGCAG 1 72 1 AGCCTTTATGAGGGGTTCAACTGCTC 1 126 0 TCCGGTTCAGTGTGATGGGGTGAAGGGTTT 2 10 1 TACTGAAAGATGGAAGGAAATGACCTCAGG 2 74 0 TCCATGATTCTGTGATGAGGCCCCTGTGGG 3 109 0 CACAGAATCATGGATTGAAGGCCAGTTTTC 3 125 1 ATCTATTACCGGGGAGGGGTAATAAATTTA 3 265 0 ATTTAATTGTAAGGGGAAGGGTGGATC 4 7 1 GCATCTCTCATGGATGGGGGGATCCCAGGG 5 134 1 GGGCGGACCCTGGAATGGATTTGAAGAGGT 5 161 1 TAAAAGGAATGAGGTGGGAGTA 7 2 0 GGCTTCCTGAGGGGTTGAAGAACGGTTATC 7 39 0 TATCCAGCTGAGGGAGAAACAC 10 6 1 AATGGTTTATGGTTTTGGGGTGATGATATA 11 42 0 CAAAAATAGTTGGATGGGAACAG 12 3 0 ATTAATTCTTTGTGCTGGAGAAAATGAATA 13 76 1 AAGTGATTACTGTATGGAGGTTAC 13 255 1 ATATGAATCATGGGATGGATTTGCATCATG 15 51 1 ********** MAP Score: 4.84104 Motif 12 ACTCAAATTCTTTAAAAGTGATAGT 0 126 1 TTCCCTGTTTTTTAGAAGTGATCTT 8 54 1 TAAACTATTCTTTAGTGGTGATTTA 9 31 1 GTTAGTTAGATTTAAATATAATCCGGCTAAAT 5 263 1 GACCGTATGATTTAATTATAATGAACCAAGAT 13 213 1 ATTTAATTGTAAGGGGAAGGGTG 4 1 1 TTAATAATACTTTATTAATATTTAGGTAATAT 13 49 0 TAAACACCTGTTTACTGATATTCCCTGTTTTT 8 34 1 CGTAAAGTAGTTTAGAAATGAGCTATAGATAT 5 92 0 AATTTACACCTATATAAGTATTGGAGAGTTGA 0 82 1 ATCAGTAATTTATAATTATAATCTTGAGGTGT 6 14 0 TATATATGTAAGCTTCTAAATG 15 0 1 GTATTACAGATATAAAAATATTACCTAAATAT 13 32 1 CGCAGCTACTTTTTAATGTGTTATGGGCGTCC 13 127 0 AACTTTGCGATTTTTTTATAATAGATGGGGCT 7 65 0 **** * ***** MAP Score: 4.06195 Motif 13 TCTGAAATAGGGGAACCCGCTGTTGAACAGCTCAT 1 17 1 TCTGTTAGGAGGGGGGCCGCAGCAGCCCTGGGTAA 1 77 1 GGTAACATTGGAGATCCCAGAGCAGTTGAACCCCT 1 107 1 GTATCCATCAAGGAACCACAGCCCTCTGAACACAA 3 37 1 AGTTTTCGACAGGATCCCGGCCCAGGTTTTTACAG 3 148 1 GGTTCATGCAGGGATCACCCCCCTTGATTCCGGGT 3 230 1 CATGGATGGGGGGATCCCAGGGCGGACCCTGGAAT 5 142 1 CAACCCCTCAGGAAGCCCCATCTATTATAAAAAAA 7 52 1 AAAACACAATGGGATCCAGGACTGGTTTTTTATTA 7 191 1 TATTCCCTCAGGGAGGCAGTGATTTAAATATCAGA 13 177 1 **** *** ** * MAP Score: 3.44492 Motif 14 GAAATCCTGATCAACTCTCCAATACTTATATAGG 0 90 0 AACCCGCTGTTGAACAGCTCATTGAGGCCCTTGA 1 30 1 CCAGAGCAGTTGAACCCCTCATAAAGGCT 1 123 1 TCAGGGGATATAAAGACCTCCAGAACCCACAGGG 3 84 1 TTGACTCATTTAAACTCTTCTGCAAGTATATCTA 5 65 1 GTGAACACCTCAAGATTATAATTAT 6 1 1 TAACCGTTCTTCAACCCCTCAGGAAGCCCCATCT 7 41 1 TTAATTGCAGTAAACACCTGTTTACTGATATTCC 8 24 1 CTTATTTATATCATCACCCCAAAACCATAAACCA 11 36 1 * *** ***** * MAP Score: 3.37045 Motif 15 CAACTCTCCAATACTTATATAGGTGTAAAT 0 83 0 AACCCTCTGCATACAGATATGCGCCTGTAA 3 177 0 TGGATCAACTTTACAGATTAACTGATTTTA 4 31 1 AAACACCTGTTTACTGATATTCCCTGTTTT 8 35 1 AAATTAAGTATTACAGATATAAAAATATTA 13 25 1 ATTTAGAAGCTTACATATATA 15 1 0 ********** MAP Score: 0.424201