AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_operons012_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944244500 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH170_MTH171 141 MTH170: phosphoribosylaminoimidazolesuccinocarboxamide synthase, MTH171: glutamine-fructose-6-phosphate transaminase #1 MTH185 125 conserved protein #2 MTH186 26 unknown #3 MTH187 142 conserved protein #4 MTH189 99 unknown #5 MTH413 300 conserved protein #6 MTH648 65 ribosomal protein L37 #7 MTH649 300 conserved protein #8 MTH861 73 conserved protein #9 MTH1201 95 conserved protein #10 MTH1202 236 proteasome, beta subunit #11 MTH1203 69 cleavage and polyadenylation specificity factor #12 MTH1204 46 phosphoribosylformylglycinamidine cyclo-ligase #13 MTH1375 22 isoleucyl-tRNA synthetase #14 MTH1376 65 conserved protein #15 MTH1396 28 thiamine monphosphate kinase #16 MTH1398 269 conserved protein #17 MTH1445 64 glycinamide ribonucleotide synthetase #18 MTH1522 116 nitrogenase alpha chain (NifD) related protein Motif 1 ATGAAATCCTGATCAACTCTCCAATACTTA 0 96 0 AGCTTCATGAGAACACTTCAAGAGGAATTT 1 12 0 TCAGATATCAGGACATCCCATATGAG 2 6 0 ACCCGCTGTTGAACAGCTCATTGAGGCCCT 3 31 1 AGGGCTGCTGCGGCCCCCCTCCTAACAGAT 3 76 0 AGGGGGGCCGCAGCAGCCCTGGGTAACATT 3 86 1 CAGAGCAGTTGAACCCCTCATAAAGGCT 3 124 1 ATGGTAAACCCTTCACCCCATCACACTGAA 4 15 0 AGTGTGCATTCAACCTCCCTGAGGTCATTT 4 57 1 TTCATGCAGGGATCACCCCCCTTGATTCCG 5 232 1 CTGTAAAGTTGATCCACCCTTCCCCTTACA 6 17 0 TCCGCCCTGGGATCCCCCCATCCATGAGAG 7 138 0 TCCATTCCAGGGTCCGCCCTGGGATCCCCC 7 150 0 GTGAACACCTCAAGATTATAAT 8 2 1 AACCGTTCTTCAACCCCTCAGGAAGCCCCA 10 42 1 ATGTCCATGGGGACAGCCCTTTGCAGGGTT 10 136 1 AAGATCACTTCTAAAAAACAGG 11 57 0 TTATTTATATCATCACCCCAAAACCATAAA 14 37 1 ATTACGTCACCTCAAATGTCTGTG 18 102 0 ********** MAP Score: 17.9359 Motif 2 ATCTGAAATAGGGGAACCCGCTGTTGAACAGCT 3 16 1 AGGGGGGCCGCAGCAGCCCTGGGTAACATTGGA 3 86 1 GGGTAACATTGGAGATCCCAGAGCAGTTGAACC 3 106 1 AGTGTGCATTCAACCTCCCTGAGGTCATTTCCT 4 57 1 CATCAAGGAACCACAGCCCTCTGAACACAAATT 5 42 1 ATAAAGACCTCCAGAACCCACAGGGGCCTCATC 5 93 1 CAGTTTTCGACAGGATCCCGGCCCAGGTTTTTA 5 147 1 TCATGGATGGGGGGATCCCAGGGCGGACCCTGG 7 141 1 TATAATAGATGGGGCTTCCTGAGGGGTTGAAGA 10 48 0 ATGTCCATGGGGACAGCCCTTTGCAGGGTTAAA 10 136 1 AAAACCAGTCCTGGATCCCATTGTGTTTTTATG 10 187 0 ATTTAAATCACTGCCTCCCTGAGGGAATAATAA 16 173 0 * ******* * * MAP Score: 14.6914 Motif 3 GATTCAGTTATATAATCTTGCGAAATCAGATTCAT 0 28 0 AATTTGAGTATGAAATCCTGATCAACTCTCCAATA 0 100 0 TTAAATTCCTCTTGAAGTGTTCTCAT 1 1 1 AAAGGGAATATGAAGACATCATAAAAACCCCCAGC 1 97 0 CCAGAGCAGTTGAACCCCTCATAAAGGCT 3 123 1 TCAGGGGATATAAAGACCTCCAGAACCCACAGGGG 5 84 1 GACAGCGAATTCAAACCCTCTGCATACAGATATGC 5 185 0 GTTCTAATCCTCCTTAAAATCAGTTAA 6 48 0 TTGACTCATTTAAACTCTTCTGCAAGTATATCTAT 7 65 1 GTGAACACCTCAAGATTATAATTATA 8 1 1 TAACCGTTCTTCAACCCCTCAGGAAGCCCCATCTA 10 41 1 TTAATTGCAGTAAACACCTGTTTACTGATATTCCC 11 24 1 TATATATGTAAGCTTCTAAATGAATATTAAT 18 6 1 TGAATATTAATCAATCCATGGATATGAATCATGGG 18 30 1 **** **** ** MAP Score: 13.2117 Motif 4 ATTTAACCCGGAATCAAGGGGGGTGATCCCTGC 5 237 0 TGGATGGGGGGATCCCAGGGCGGACCCTGGAAT 7 144 1 CCATGGATATGAATCATGGGATGGATTTGCATC 18 45 1 CCTCATCACAGAATCATGGATTGAAGGCCAGTT 5 119 1 AAACACAATGGGATCCAGGACTGGTTTTTTATT 10 192 1 CTGTGGTTATGCAACATGGCTGGAACCATGATG 18 74 0 CCACATGCATCTCTCATGGATGGGGGGATCCCA 7 128 1 AGAGGGCTGTGGTTCCTTGATGGATACTCTGAA 5 31 0 TTTCTCCTCAGGTTCATGCAGGGATCACCCCCC 5 220 1 TCCGGTTCAGTGTGATGGGGTGAAGGGTTTAC 4 9 1 AATAGATGGGGCTTCCTGAGGGGTTGAAGAACG 10 45 0 GGTGAAGGGTTTACCATGGCCGGACCTTCAGTG 4 28 1 GAGTTTAAATGAGTCAATGATGGTAAAGCAGAT 7 49 0 CCATGATTCATATCCATGGATTGATTAATATTC 18 31 0 GGGGTTACTGAAAGATGGAAGGAAATGACCTC 4 77 0 GGAAGGAAATGACCTCAGGGAGGTTGAATGCAC 4 60 0 ATCTCCAATGTTACCCAGGGCTGCTGCGGCCCC 3 89 0 TCTTTATTATTCCCTCAGGGAGGCAGTGATTTA 16 170 1 * ******* ** MAP Score: 12.6941 Motif 5 CCGTTCTTCAACCCCTCAGGAAGCCCCATCTATTA 10 44 1 TGCAGGGATCACCCCCCTTGATTCCGGGTTAAATT 5 236 1 AGGTCTTTATATCCCCTGAGAACCCTTAAATTTGT 5 68 0 AATAATAAAGATCCCTCTTGCTCGCAGCTACTTTT 16 146 0 GGGGATATAAAGACCTCCAGAACCCACAGGGGCCT 5 87 1 ATCTTTATTATTCCCTCAGGGAGGCAGTGATTTAA 16 169 1 GACATCATAAAAACCCCCAGCTTCCAAACTATTTT 1 83 0 AATTCAGAGTATCCATCAAGGAACCACAGCCCTCT 5 29 1 GAGCAGTTGAACCCCTCATAAAGGCT 3 126 1 CATTCCAGGGTCCGCCCTGGGATCCCCCCATCCAT 7 143 0 AAGGGGGGTGATCCCTGCATGAACCTGAGGAGAAA 5 220 0 GTTAAATGAAAACCCTTTATATACCATAAAAACAC 10 163 1 CCGCTGTTGAACAGCTCATTGAGGCCCTTGATGAC 3 33 1 * ***** * * ** MAP Score: 12.402 Motif 6 ATCATAAAAACCCCCAGCTTCCAAACTATTTTT 1 82 0 GCTGCGGCCCCCCTCCTAACAGATTTGTCACTG 3 67 0 GCAGTTGAACCCCTCATAAAGGCT 3 128 1 GTGCATTCAACCTCCCTGAGGTCATTTCCTTCC 4 60 1 GGAACCACAGCCCTCTGAACACAAATTTAAGGG 5 48 1 GATATAAAGACCTCCAGAACCCACAGGGGCCTC 5 90 1 CGAATTCAAACCCTCTGCATACAGATATGCGCC 5 182 0 CAGGGATCACCCCCCTTGATTCCGGGTTAAATT 5 238 1 TATTACCCCTCCCCGGTAATAGATAAACGGTGA 5 271 1 GTTCTAATCCTCCTTAAAATCAGTTAATCTG 6 44 0 CCCTGGGATCCCCCCATCCATGAGAGATGCATG 7 131 0 TACTCCCACCTCATTCCTTTTAATGAC 10 4 1 GTTCTTCAACCCCTCAGGAAGCCCCATCTATTA 10 46 1 GACTAAAGGACGCCCATAACACATTAAAAAGTA 16 120 1 TAATAAAGATCCCTCTTGCTCGCAGCTACTTTT 16 146 0 TAAATCACTGCCTCCCTGAGGGAATAATAAAGA 16 170 0 GTAACCTCCATACAGTAATCACTTTTC 16 252 0 ***** *** ** MAP Score: 11.7678 Motif 7 CCAGAGCAGTTGAACCCCTCATAAAGGCT 3 123 1 TAACCGTTCTTCAACCCCTCAGGAAGCCCCA 10 41 1 GTGAACACCTCAAGATTATAAT 8 1 1 CCGGCCATGGTAAACCCTTCACCCCATCACA 4 20 0 GGGTTTTCATTTAACCCTGCAAAGGGCTGTC 10 147 0 TTTATTTTTTTAAACACTCCCCTAAACA 9 7 0 CTTATTTATATCATCACCCCAAAACCATAAA 14 36 1 TCAAGGGGGGTGATCCCTGCATGAACCTGAG 5 226 0 GAAATCCTGATCAACTCTCCAATACTTATAT 0 93 0 AACCCGCTGTTGAACAGCTCATTGAGGCCCT 3 30 1 GTAAAGTTGATCCACCCTTCCCCTTACAATT 6 14 0 GTCCGCCCTGGGATCCCCCCATCCATGAGAG 7 138 0 TCAGGGGATATAAAGACCTCCAGAACCCACA 5 84 1 CAGCTTCATGAGAACACTTCAAGAGGAATTT 1 12 0 GAAGACATCATAAAAACCCCCAGCTTCCAAA 1 90 0 GTTAAATTTATTACCCCTCCCCGGTAATAGA 5 263 1 * ********* MAP Score: 11.5363 Motif 8 GATTCATGCTTCTTAGGGTGAAATA 0 5 0 ACTCAAATTCTTTAAAAGTGATAGT 0 126 1 TTAAATTCCTCTTGAAGTGTTCTCATGAA 1 9 1 GATTAACTGATTTTAAGGAGGATTAGAAC 6 46 1 TGCAGAAGAGTTTAAATGAGTCAATGATGG 7 59 0 CCTGGAATGGATTTGAAGAGGTACTGCAGT 7 169 1 ATAATTATAATCTTGAGGTGTTCAC 8 5 0 TGTTTAGGGGAGTGTTTAAAAA 9 2 1 TATTATTTTTATTAGAGGTGTATCT 10 221 1 TTCCCTGTTTTTTAGAAGTGATCTT 11 54 1 TAAACTATTCTTTAGTGGTGATTTA 12 31 1 TGGTTTATGGTTTTGGGGTGATGATATAAA 14 40 0 CGCAGCTACTTTTTAATGTGTTATGGGCGT 16 129 0 AACCACAGACATTTGAGGTGACGTAAT 18 99 1 ********** MAP Score: 11.2134 Motif 9 CTGAAATAGGGGAACCCGCTGTTGAACAGCTCAT 3 18 1 GATCTCCAATGTTACCCAGGGCTGCTGCGGCCCC 3 89 0 GTAACATTGGAGATCCCAGAGCAGTTGAACCCCT 3 108 1 GGGTGAAGGGTTTACCATGGCCGGACCTTCAGTG 4 27 1 TGGAAGGAAATGACCTCAGGGAGGTTGAATGCAC 4 60 0 AAAGACCTCCAGAACCCACAGGGGCCTCATCACA 5 95 1 GTTTTCGACAGGATCCCGGCCCAGGTTTTTACAG 5 149 1 AATTTAACCCGGAATCAAGGGGGGTGATCCCTGC 5 237 0 GTTAAATTTATTACCCCTCCCCGGTAATAGATAA 5 263 1 ATGGATGGGGGGATCCCAGGGCGGACCCTGGAAT 7 143 1 TAATAGATGGGGCTTCCTGAGGGGTTGAAGAACG 10 45 0 AAACACAATGGGATCCAGGACTGGTTTTTTATTA 10 192 1 GTGTTTCTCCCTCAGCTGGATA 13 4 0 ATCTTTATTATTCCCTCAGGGAGGCAGTGATTTA 16 169 1 TCCATGGATATGAATCATGGGATGGATTTGCATC 18 44 1 *** *** * * ** MAP Score: 9.56585 Motif 10 TTCACCCTAAGAAGCATGAATCTGATTTCGCAAGATTA 0 13 1 ACAGAATCATGGATTGAAGGCCAGTTTTCGACAGGATC 5 126 1 GTTTTCGACAGGATCCCGGCCCAGGTTTTTACAGGCGC 5 149 1 TCACCCCCCTTGATTCCGGGTTAAATTTATTACCCCTC 5 244 1 ATTGTAAGGGGAAGGGTGGATCAACTTTACAGATTAAC 6 15 1 ATCCCAGGGCGGACCCTGGAATGGATTTGAAGAGGTAC 7 155 1 AAACACAATGGGATCCAGGACTGGTTTTTTATTATTTT 10 192 1 CTGGAGAAAATGAATATGGACCCATTTTAGGACTAAAG 16 90 1 CCATGGATATGAATCATGGGATGGATTTGCATCATGGT 18 45 1 *** ** * * *** MAP Score: 6.48731 Motif 11 ATTTACACCTATATAAGTATTGGAGAGTTG 0 83 1 CTTTTAAAGAATTTGAGTATGAAATCCTGA 0 114 0 AGAATAGAAAAATGAAGTATCTGATTGGAA 7 221 1 CGTTAGTTAGATTTAAATATAATCCGGCTA 7 262 1 GTGATGATATAAATAAGTATATACATCCAG 14 23 0 ACCAAATGAAAATTAAGTATTACAGATATA 16 16 1 TATTACAGATATAAAAATATTACCTAAATA 16 33 1 CCTAAATATTAATAAAGTATTATTAATTCT 16 55 1 GTGCTGGAGAAAATGAATATGGACCCATTT 16 87 1 GGAGGCAGTGATTTAAATATCAGATGACCG 16 188 1 TGACCGTATGATTTAATTATAATGAACCAA 16 212 1 GTAAGCTTCTAAATGAATATTAATCAATCC 18 17 1 ********** MAP Score: 5.58731 Motif 12 CATTACAGCCTTAAAATATTATCCCATGCAGAT 1 47 0 TTTTATGATGTCTTCATATTCCCTTTTAT 1 106 1 GTTCTGGAGGTCTTTATATCCCCTGAGAACCCT 5 77 0 GATTCCGGGTTAAATTTATTACCCCTCCCCGGT 5 255 1 TATATCACCGTTTATCTATTACCGGGGAGGGGT 5 275 0 TCAGTTAATCTGTAAAGTTGATCCACCCTTCCC 6 23 0 GTTAGTTAGATTTAAATATAATCCGGCTAAATT 7 263 1 ATCAGTAATTTATAATTATAATCTTGAGGTGTT 8 13 0 CTTTTCTTACTGTAAATATTCTCTTGA 8 56 1 ATATAAAGGGTTTTCATTTAACCCTGCAAAGGG 10 152 0 AACACCTGTTTACTGATATTCCCTGTTTTTTAG 11 36 1 GGCTAACTATTTAGATAACCTTAAACTATT 12 7 1 TGTATATACTTATTTATATCATCACCCCAAAAC 14 28 1 ATTACAGATATAAAAATATTACCTAAATATTAA 16 34 1 AATGGGTCCATATTCATTTTCTCCAGCACAAAG 16 83 0 * ** **** *** MAP Score: 5.53082 Motif 13 AGGTACTGCAGTGCAAGAAAACTTATATATTAGTA 7 187 1 CTATCCTAGATTAAAATTTAGCCGGATTAT 7 280 0 AGAATATTTACAGTAAGAAAAGTTATATGTGGATC 8 43 0 ACGGTTATCCGGTCATTAAAAGGAATGAGGTGGGA 10 13 0 AGATACACCTCTAATAAAAATAATAAAAAACCA 10 213 0 AATATCACCAAATGAAAATTAAGTATTACAGA 16 7 1 ATTAATAATACTTTATTAATATTTAGGTAATATTT 16 47 0 TTGTGCTGGAGAAAATGAATATGGACCCATTTTAG 16 85 1 ATCTATCTTGGTTCATTATAATTAAATCATACGGT 16 214 0 AACCAAGATAGATAATGAAAAGTGATTACTGTATG 16 236 1 GGAAATATGTCATTAATAATAATGACAGATTCCGT 17 15 0 ATGTAAGCTTCTAAATGAATATTAATCAATCCATG 18 15 1 * ******* * * MAP Score: 5.39713 Motif 14 TGTACCAATATATAACAGGAGGTCCTTATTAAACTTTG 10 90 0 AAACCCTTTATATACCATAAAAACACAATGGGATCCAG 10 172 1 TATACTTATTTATATCATCACCCCAAAACCATAAACCA 14 32 1 GTATTACAGATATAAAAATATTACCTAAATATTAATAA 16 32 1 CCAAACTATTTTTATCATTACAGCCTTAAAATATTATC 1 57 0 GTTCTCAGGGGATATAAAGACCTCCAGAACCCACAGGG 5 80 1 TCAGATATCAGGACATCCCATATGAG 2 5 0 CGCAAGATTATATAACTGAATCGCAATATAACTCATAA 0 41 1 GGGGAGTGTTTAAAAAAATAAATCCATAAGTGTTCTTT 9 16 1 TAAATAAGTATATACATCCAGTTCAGGAGAAATT 14 6 0 CTTCTGCAAGTATATCTATAGCTCATTTCTAAACTACT 7 81 1 CCCCATCTATTATAAAAAAATCGCAAAGTTTAATAAGG 10 67 1 **** ** * ** * MAP Score: 2.99457 Motif 15 TAGTTTGGAAGCTGGGGGTTTTTATGATGTCTTCATATTCCC 1 87 1 ATATCTGTATGCAGAGGGTTTGAATTCGCTGTCTTTCTCCTC 5 187 1 GGCGGACCCTGGAATGGATTTGAAGAGGTACTGCAGTGCAAG 7 162 1 ATGGGATCCAGGACTGGTTTTTTATTATTTTTATTAGAGGTG 10 199 1 AATTTCTCCTGAACTGGATGTATATACTTATTTATATCATCA 14 10 1 CCCTCAGGGAGGCAGTGATTTAAATATCAGATGACCGTATGA 16 181 1 TATGAATCATGGGATGGATTTGCATCATGGTTCCAGCCATGT 18 52 1 ** ** *** ** * MAP Score: 1.51378 Motif 16 TCCGGTTCAGTGTGATGGGGTGAAGG 4 1 1 CCCCTTGATTCCGGGTTAAATTTATTACCCCTCCC 5 249 1 ATTACCCCTCCCCGGTAATAGATAAACGGTGATAT 5 272 1 TAAATATAATCCGGCTAAATTTTAATCTAGGATAG 7 275 1 CTTTTAATGACCGGATAACCGTTCTTCAACCCCTC 10 26 1 GCAGTAAACACCTGTTTACTGATATTCCCTGTTTT 11 30 1 TATCCAGCTGAGGGAGAAACAC 13 3 1 ** * * * ***** MAP Score: 0.721734 Motif 17 TTTACACCTATATAAGTATTGGAGAGTTGAT 0 84 1 CATTACAGCCTTAAAATATTATCCCATGCAG 1 49 0 GATTCCGGGTTAAATTTATTACCCCTCCCCG 5 255 1 TATATCACCGTTTATCTATTACCGGGGAGGG 5 277 0 ATTTAATTGTAAGGGGAAGGGT 6 1 1 TTAAAATCAGTTAATCTGTAAAGTTGATCCA 6 31 0 CTTCTGCAAGTATATCTATAGCTCATTTCTA 7 81 1 GTTAGTTAGATTTAAATATAATCCGGCTAAA 7 263 1 ATCAGTAATTTATAATTATAATCTTGAGGTG 8 15 0 GGTTTTTTATTATTTTTATTAGAGGTGTATC 10 214 1 GTAATATTTTTATATCTGTAATACTTAATTT 16 25 0 CAGCTACTTTTTAATGTGTTATGGGCGTCCT 16 126 0 GAGGCAGTGATTTAAATATCAGATGACCGTA 16 189 1 GACCGTATGATTTAATTATAATGAACCAAGA 16 213 1 TATTTGAAAGTATATATTTTATAGGAAATAT 17 42 0 TATATATGTAAGCTTCTAAAT 18 0 1 ***** ***** MAP Score: 0.305505