AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_operons013_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944244541 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH52 189 aspartate aminotransferase related protein #1 MTH225 300 histidinol dehydrogenase #2 MTH243 231 conserved protein #3 MTH669 145 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase related protein #4 MTH1278 159 conserved protein #5 MTH1280 66 PET112-like protein #6 MTH1343 218 imidazoleglycerol-phosphate synthase (cyclase) #7 MTH1468 35 ferredoxin #8 MTH1469 57 molybdenum transport ATP-binding protein homolog #9 MTH1470 44 molybdenum transport protein ModA related protein #10 MTH1471 56 O-antigen transporter homolog #11 MTH1472 30 O-antigen transporter homolog #12 MTH1475 56 unknown #13 MTH1476 127 tryptophan synthase, beta subunit homolog #14 MTH1506 189 ATP phosphoribosyltransferase #15 MTH1522 116 nitrogenase alpha chain (NifD) related protein #16 MTH1587 31 histidinol-phosphate aminotransferase #17 MTH1591 30 phosphonopyruvate decarboxylase #18 MTH1592 21 conserved protein #19 MTH1593 205 ribosomal protein S3a #20 MTH1694 207 aspartate aminotransferase related protein Motif 1 TTTTTATTAACTCCAGTGGACTACATGATA 0 126 1 TGGTAGTCATATCCATGGGATGAATTCCAA 1 129 1 CCTCCAGTGAAAAAGTTAGGG 1 289 0 GTTACCTATAATCCAGGGGAGAGTGTGAC 2 212 1 AGTTTATCTCCATGAAACTTTATAAAG 4 7 1 CCTTTTTATGATCCGGTGAACTTCAGAGTA 5 29 0 GAAGACCAGACTCAGGGGACAGCAGACAGC 6 168 1 GATGTATCCGCCGGGGACAGGGTCATCC 8 8 1 CCCTGAAATGCTCCACGGAATGCCCCAACA 10 26 0 TTCTGGATGGCTCCGGGAGAAAAAAATCAG 12 33 0 AGATATCTTACTGCATGGAAATGATGATTT 13 73 1 ATAAGTTAATCTCCAGTGAAGAATGATAGA 14 97 1 CGGATAAACCCTGCAGGAGCTTAATGTAAA 14 140 1 CTCTCCAGTGACCTGAGTTAAC 16 2 1 ********** MAP Score: 13.7586 Motif 2 TTTTTGTTTTCCAGCAGTGATCCGGCTTCTTCACA 0 69 1 ATTGAGCTAGTCAGGAGTTATACCG 3 130 1 CAGGGTTACATCTGCAGTAGTGCAGAATACTTTAT 4 31 0 GAGTGATGTTTCTGTAGCTGCAGGGTTACATCTGC 4 51 0 GACTGATGTTTCTGTAGCTACAGGGTTACAATCTT 4 86 0 AATAATATACTCTGAAGTTCACCGGATCATAAAAA 5 22 1 GACCTTGGGATCCGAAGTCCCACGTCATATTCCAG 6 57 1 AATAGAGATGTGTGTAGGGGGCCCGTAGTCTAGCC 6 91 0 CATCAACGTGTCAGCCGAAGACCAGACTCAGGGGA 6 152 1 GATGTATCCGCCGGGGACAGGGTCATCCTCC 8 6 1 GAGAAAAAAATCAGTAGGGGTGAGGTGGTGGAGGG 12 12 0 ATTTTTTTCTCCCGGAGCCATCCAGAAACG 12 36 1 GATGATTTCATCAGTAGGGACCAGTTCCAGCCATG 13 95 1 TAACTTATAATCGGTCAGGGACCGGACTCCAAACC 14 36 1 AATGATAGATCCTGCAGATGAACGGATAAACCCTG 14 118 1 ** * ** * **** MAP Score: 12.2545 Motif 3 TAATTTGGATTAGGGGGCATCTAATGGACC 1 65 0 TTTAAGAATTTAGGGGGCACACCGGATCAT 1 229 0 TATGGGCGAGAGGCTGTGCC 2 0 1 TAACCGGAATCATGGGCCATCCCCTGGGCA 2 26 0 GCCTGTAATGCCGGGGTGATAAACTGATAA 2 71 0 ACCTATAATCCAGGGGAGAGTGTGAC 2 215 1 AAAAGCGGACCCGGGGGGATTTGAACCCCC 6 27 1 AGACCAGACTCAGGGGACAGCAGACAGCTT 6 170 1 ATTTATTAATTAAGGGGCATTTAGTATAAA 6 198 0 GATGTATCCGCCGGGGACAGGGTCATCCTC 8 10 1 ATATAAAGAACCGGCGCCATAGGTTCTACA 9 24 1 AAAAAATCAGTAGGGGTGAGGTGGTGGAGG 12 13 0 TTTTTTTCTCCCGGAGCCATCCAGAAACG 12 37 1 ATTTCATCAGTAGGGACCAGTTCCAGCCAT 13 99 1 ********** MAP Score: 12.1235 Motif 4 TTTTTCTGTTTTCTGGGGTTTATAATTCCT 0 5 1 GGGCGAGAGGCTGTGCCCAGGGGATGGCCCATGAT 2 13 1 GTCACACTCTCCCCTGGATTATAGGTAAC 2 212 0 AATAAAAAAGCGGACCCGGGGGGATTTGAACCCCC 6 22 1 GGATTTGAACCCCCGACCTTGGGATCCGAAGTCCC 6 43 1 GAGGATGACCCTGTCCCCGGCGGATACATC 8 5 0 ATATAAAGAACCGGCGCCATAGGTTCTACA 9 24 1 CCTCCACCACCTCACCCCTACTGATTTTTTTCTCC 12 13 1 ATGGCTGGAACTGGTCCCTACTGATGAAATCATCA 13 94 0 GGACCAGTTCCAGCCATGAGGTGAT 13 112 1 TAAATTTAACCAGTCATCGAGGGATTTA 14 171 1 AAGCCTTCTTCTCTTTCGCATGGATACTCCTGTGC 20 170 1 ATGGATACTCCTGTGCTGATGTGATAAA 20 189 1 * * * ** ***** MAP Score: 11.8029 Motif 5 TAATTCCTTTTTTAACAGGGTATCCCTGAGAAA 0 32 1 AAGAATTTTTTGTTTTCCAGCAGTGATCCGGCT 0 63 1 AGGCTGGGGATTCAGCACAGCAATTTTTATTAA 0 103 1 TCGCCCTAACTTTTTCACTGGAGG 1 286 1 TTATCAGTTTATCACCCCGGCATTACAGGCAAA 2 71 1 CCTTTCACTTATTTCCACAGCAAGTACTGCTCT 3 17 1 TAAAGTATTCTGCACTACTGCAGATGTAACCCT 4 32 1 CTACTGCAGATGTAACCCTGCAGCTACAGAAAC 4 46 1 CACTCAAGATTGTAACCCTGTAGCTACAGAAAC 4 81 1 GGACTTCACATTTATCACGGAATTCAA 4 142 1 TGCCCTGAAATGCTCCACGGAATGCCCCAACAA 10 25 0 CTACTGATTTTTTTCTCCCGGAGCCATCCAGAA 12 30 1 GGATCTATCATTCTTCACTGGAGATTAACTTAT 14 97 0 AGATGAACGGATAAACCCTGCAGGAGCTTAATG 14 133 1 CACCTTAATCTTTAACACCGTAAAAACAGCTGG 19 177 0 ATAAACTTTGTTTACCAGAGGAGCCTCTGTAAT 20 61 0 TTTATCACATCAGCACAGGAGTATCCATGCG 20 186 0 **** *** * ** MAP Score: 11.7756 Motif 6 TTATAATTCCTTTTTTAACAGGGTATCCCTG 0 29 1 AAAGAATTTTTTGTTTTCCAGCAGTGATCCG 0 62 1 ATTGCTGTGCTGAATCCCCAGCCTGTGAAGA 0 96 0 GATTTATCCTCCAGAAGTTAATTC 0 175 0 CGGTTACATGTGTTTTTCCAGTTATCAGTTT 2 50 1 AGTTATCAGTTTATCACCCCGGCATTACAGG 2 69 1 CTTACAATATTTATTTACCATCAGCGATAAA 2 167 1 AGTTTATCTCCATGAAACTTTAT 4 2 1 TGAATCACCAGAAATAAAGAG 11 19 0 CCTACTGATTTTTTTCTCCCGGAGCCATCCA 12 29 1 TGTTTATTAACCATTCCCTTTGAT 13 3 1 GAGATATAAGTTAATCTCCAGTGAAGAATGA 14 92 1 GTCATGAATATGAACAGCCAGTTATGCGGG 19 9 0 CTCTAAATCATGGTTAACCAGTTAAATATGA 19 124 1 GACTGGACTGTTTTTAGCCAGCTGTAGGATA 20 15 1 TCAGGCCACATTATCCTACAGCTGGCTAAAA 20 26 0 TTAATAAACTTTGTTTACCAGAGGAGCCTCT 20 66 0 ****** **** MAP Score: 11.4013 Motif 7 AAAGAATTTTTTGTTTTCCAGCAGTGATCCGGCTTCT 0 62 1 GATTTATCCTCCAGAAGTTAATTCAACACG 0 169 0 TATTTAAAAATTTTGGTCCATTAGATGCCCCCTAATC 1 51 1 CCCGAAGAGATTCTTTGCCTGTAATGCCGGGGTGATA 2 80 0 CCGGTGCAGCATCTAAACCCGAAGAGATTCTTTGCCT 2 97 0 CTTACAATATTTATTTACCATCAGCGATAAATATTGT 2 167 1 CATAGGTTACCTATAATCCAGGGGAGAGTGTGAC 2 207 1 ACTACTGCAGATGTAACCCTGCAGCTACAGAAACATC 4 45 1 TCACTCAAGATTGTAACCCTGTAGCTACAGAAACATC 4 80 1 CCTACTGATTTTTTTCTCCCGGAGCCATCCAGAAACG 12 29 1 AAGTTCTAACTTATAATCGGTCAGGGACCGGACTCCA 14 30 1 TTAATAAACTTTGTTTACCAGAGGAGCCTCTGTAATA 20 60 0 ** * ** * ** ** MAP Score: 10.374 Motif 8 TTCTCAGGGATACCCTGTTAAAAAAGGAATTATAAA 0 28 0 GCTGAATCCCCAGCCTGTGAAGAAGCCGGATCACTG 0 83 0 CCTCCAGTGAAAAAGTTAGGGCGAAT 1 284 0 GCCCAGGGGATGGCCCATGATTCCGGTTACATGTGT 2 27 1 TACATGTGTTTTTCCAGTTATCAGTTTATCACCCCG 2 54 1 AAGAGATTCTTTGCCTGTAATGCCGGGGTGATAAAC 2 77 0 TTGCCATAGGTTACCTATAATCCAGGGGAGAGTGTG 2 203 1 GTCCGGTCCCTGACCGATTATAAGTTAGAACTTATA 14 27 0 ACCGGACTCCAAACCTATTATATAGGTTTCCTGAAA 14 56 1 TATAAGTTAATCTCCAGTGAAGAATGATAGATCCTG 14 96 1 AAAATAAATTTAACCAGTCATCGAGGGATTTA 14 167 1 TGAATATGAACAGCCAGTTATGCGGG 19 0 0 AATACTCCCTTATCCTATTATAGAGTATTCCATACT 19 74 1 AAATCATGGTTAACCAGTTAAATATGAATTTTTTGA 19 128 1 * ** ** ** *** MAP Score: 8.15116 Motif 9 GAATTATAAACCCCAGAAAACAGAAAAA 0 5 0 TTTTGTTTTCCAGCAGTGATCCGGCTTCTTCAC 0 70 1 TTTTTATTAACTCCAGTGGACTACATGATAATA 0 126 1 GATTTATCCTCCAGAAGTTAATTCAACACGA 0 168 0 CCTCCAGTGAAAAAGTTAGGGCGA 1 286 0 GAGAGGCTGTGCCCAGGGGATGGCCCATGATTC 2 17 1 ATCAGTTTATCACCCCGGCATTACAGGCAAAGA 2 73 1 GGTTTAGATGCTGCACCGGTCAGTATAGAATCT 2 115 1 GTCACACTCTCCCCTGGATTATAGGTAACCT 2 210 0 AGGGTTACATCTGCAGTAGTGCAGAATACTTTA 4 32 0 GTTTCTGTAGCTGCAGGGTTACATCTGCAGTAG 4 46 0 GGGTTCAAATCCCCCCGGGTCCGCTTTTTTATT 6 22 0 ATCAACGTGTCAGCCGAAGACCAGACTCAGGGG 6 153 1 GATGTATCCGCCGGGGACAGGGTCATCCTC 8 7 1 TGAATCACCAGAAATAAAGAGTTGACGG 11 12 0 TTCTGGATGGCTCCGGGAGAAAAAAATCAGTAG 12 30 0 ATAAGTTAATCTCCAGTGAAGAATGATAGATCC 14 97 1 ATGATAGATCCTGCAGATGAACGGATAAACCCT 14 119 1 CGGATAAACCCTGCAGGAGCTTAATGTAAAATA 14 140 1 CTCTCCAGTGACCTGAGTTAACCGA 16 2 1 ATTACAGAGGCTCCTCTGGTAAACAAAGTTTAT 20 61 1 TTTATCACATCAGCACAGGAGTATCCATGCGAA 20 184 0 ****** *** * MAP Score: 8.09747 Motif 10 GATTTATCCTCCAGAAGTTAATTCA 0 174 0 TCGGGTTTAGATGCTGCACCGGTCAGTATA 2 112 1 GTATTCTGCACTACTGCAGATGTAACCCTG 4 36 1 TGCAGATGTAACCCTGCAGCTACAGAAACA 4 50 1 CAAGATTGTAACCCTGTAGCTACAGAAACA 4 85 1 GACTACGGGCCCCCTACACACATCTCTATT 6 96 1 ACCCCTCCACCACCTCACCCC 12 1 1 CACCACCTCACCCCTACTGATTTTTTTCTC 12 17 1 AGAATGATAGATCCTGCAGATGAACGGATA 14 116 1 GAACGGATAAACCCTGCAGGAGCTTAATGT 14 137 1 AGGCCACATTATCCTACAGCTGGCTAAAAA 20 25 0 ********** MAP Score: 6.28686 Motif 11 ATCCCTGAGAAAGAATTTTTTGTTTTCCAGC 0 53 1 GGATTCAGCACAGCAATTTTTATTAACTCCA 0 110 1 TGACTACCATTTGCAATTTTTATATTAATCT 1 107 0 AGTATAGAATCTGATTTTTTTTCTCATGGTA 2 136 1 ACAGCAAGTACTGCTCTTTTTATTGTAGACC 3 33 1 TAGCTCAATTCTGAATATTTTATGTGTATGG 3 108 0 TTTATCTTGACTGATGTTTCTGTAGCTACAG 4 98 0 CTCACCCCTACTGATTTTTTTCTCCCGGAGC 12 23 1 CCAGTTAAATATGAATTTTTTGAATTTATGT 19 141 1 ATGTTAAATCCAGCTGTTTTTACGGTGTTAA 19 168 1 ATAATGTGGCCTGATTTTATTACAGAGGCTC 20 43 1 ***** ***** MAP Score: 5.95492 Motif 12 TTTTGTTTTCCAGCAGTGATCCGGCTTCTTCAC 0 70 1 TTTTTATTAACTCCAGTGGACTACATGATAATA 0 126 1 GGTTTAGATGCTGCACCGGTCAGTATAGAATCT 2 115 1 GTTACCTATAATCCAGGGGAGAGTGTGAC 2 212 1 TTCATGTAAATAGCAGGGATCTAAAAAATAGGG 3 63 0 GGGTTCAAATCCCCCCGGGTCCGCTTTTTTATT 6 22 0 CGAAGACCAGACTCAGGGGACAGCAGACAGCTT 6 167 1 GATGTATCCGCCGGGGACAGGGTCATCCTC 8 7 1 AGAAAAAAATCAGTAGGGGTGAGGTGGTGGAGG 12 13 0 ATGATTTCATCAGTAGGGACCAGTTCCAGCCAT 13 96 1 GGACCAGTTCCAGCCATGAGGTGAT 13 112 1 AACTTATAATCGGTCAGGGACCGGACTCCAAAC 14 37 1 ATAAGTTAATCTCCAGTGAAGAATGATAGATCC 14 97 1 CTCTCCAGTGACCTGAGTTAACCGA 16 2 1 * ******* * * MAP Score: 5.81358 Motif 13 TTCTGGGGTTTATAATTCCTTTTTTAACAGGGTATCCC 0 20 1 TCAGTCTCCTTATAAGTGTGTATTAAACTTATTATTTA 1 19 1 AGTGAAAGCATATAAATAAATGTTTATATTACTGGAAT 1 176 1 AAGTTAACCATTTAAATATTTTCTCATCAACGTGTCAG 6 128 1 ACAGTAAAGTTTTAAATAGTTCTTTAAAGATATCTTAC 13 46 1 CCTGACCGATTATAAGTTAGAACTTATAAGTTATAAGG 14 17 0 AGGAGCTTAATGTAAAATAAATTTAACCAGTCATCGAG 14 154 1 TATGTAAGCTTCTAAATGAATATTAATCAATCCATGGA 15 14 1 CATGTCAAGATTTAAATACTCCCTTATCCTATTATAGA 19 60 1 TGTATGTAACTCTAAATCATGGTTAACCAGTTAAATAT 19 115 1 * ***** ** * * MAP Score: 5.46095 Motif 14 TCCATTAGATGCCCCCTAATCCAAATTAAG 1 67 1 GATCCGGTGTGCCCCCTAAATTCTTAAAAG 1 231 1 TTTTATTGTAGACCCCTATTTTTTAGATCC 3 50 1 TAGACTACGGGCCCCCTACACACATCTCTA 6 94 1 TATACTAAATGCCCCTTAATTAATAAAT 6 200 1 TCCACCACCTCACCCCTACTGATTTTTTTC 12 15 1 ********** MAP Score: 5.11768 Motif 15 TTTTTCTGTTTTCTGGGGTTTATAATTC 0 5 1 GGGCGAGAGGCTGTGCCCAGGGGATGGCCCATG 2 13 1 ACACATGTAACCGGAATCATGGGCCATCCCCTG 2 30 0 CATAGGTTACCTATAATCCAGGGGAGAGTGTGA 2 207 1 TAATAAAAAAGCGGACCCGGGGGGATTTGAACC 6 21 1 ACTTCGGATCCCAAGGTCGGGGGTTCAAATCCC 6 42 0 CAGCCGAAGACCAGACTCAGGGGACAGCAGACA 6 163 1 GAGGATGACCCTGTCCCCGGCGGATACATC 8 7 0 ATATAAAGAACCGGCGCCATAGGTTCTACA 9 24 1 TAAATTTAACCAGTCATCGAGGGATTTA 14 171 1 **** ** **** MAP Score: 5.04971 Motif 16 TGGGCGAGAGGCTGTGCCCAGGGGATGGCCCAT 2 12 1 ACACATGTAACCGGAATCATGGGCCATCCCCTG 2 30 0 GTTTATCACCCCGGCATTACAGGCAAAGAATCT 2 77 1 CACACTCTCCCCTGGATTATAGGTAACCTATGG 2 206 0 TAATAAAAAAGCGGACCCGGGGGGATTTGAACC 6 21 1 ACTTCGGATCCCAAGGTCGGGGGTTCAAATCCC 6 42 0 CAGCCGAAGACCAGACTCAGGGGACAGCAGACA 6 163 1 GATGTATCCGCCGGGGACAGGGTCATCCTCCTT 8 10 1 ATATAAAGAACCGGCGCCATAGGTTCTACA 9 24 1 GGGACCAGTTCCAGCCATGAGGTGAT 13 111 1 ATAAATTTAACCAGTCATCGAGGGATTTA 14 170 1 CTCTCCAGTGACCTGAGTTAACCGAGA 16 4 1 ATATGAACAGCCAGTTATGCGGG 19 0 0 **** *** *** MAP Score: 4.7523 Motif 17 TTTGGTCCATTAGATGCCCCCTAATCCAAATTAA 1 62 1 TCCAAATTAAGGAATGACCACAGATTAATATAAA 1 86 1 TAAATGATCCGGTGTGCCCCCTAAATTCTTAAAA 1 226 1 TTCTTAAAAGGGAATGGCTCCATAAAACTAACCA 1 251 1 CTGTGCCCAGGGGATGGCCCATGATTCCGGTTAC 2 23 1 CACTACTGCAGATGTAACCCTGCAGCTACAGAAA 4 44 1 TAAAAAGGGAGGAATAACCATTAAG 5 51 1 AGCTTTATACTAAATGCCCCTTAATTAATAAAT 6 195 1 AATGCTCCACGGAATGCCCCAACAATGACACTGA 10 16 0 CGTTTCTGGATGGCTCCGGGAGAAAAAAAT 12 36 0 CCAGCCATGTTGCATAACCACAGACATTTGAGGT 15 84 1 GCTGTTCATATTCATGACCACACAGCACCCCAAA 19 22 1 CATCAGCACAGGAGTATCCATGCGAAAGAGAAGA 20 176 0 ** *** **** * MAP Score: 4.29672 Motif 18 TTCTTTCTCAGGGATACCCTGTTAAAAAAGGAATT 0 33 0 TTTGGTCCATTAGATGCCCCCTAATCCAAATTAAG 1 62 1 TAAATGATCCGGTGTGCCCCCTAAATTCTTAAAAG 1 226 1 GTTTTATGGAGCCATTCCCTTTTAAGAATTTAGGG 1 244 0 CTGTGCCCAGGGGATGGCCCATGATTCCGGTTACA 2 23 1 TCCACAGCAAGTACTGCTCTTTTTATTGTAGACCC 3 30 1 CTTGGGATCCGAAGTCCCACGTCATATTCCAGGCT 6 60 1 AGCTTTATACTAAATGCCCCTTAATTAATAAAT 6 195 1 CGGGGACAGGGTCATCCTCCTTGTTGAACCCGACG 8 21 1 AATGCTCCACGGAATGCCCCAACAATGACACTGAA 10 15 0 GCGGTATATGCCCTGAAATGCTCCACGGA 10 37 0 TGTTTATTAACCATTCCCTTTGATGTACATATAT 13 9 1 TGTCAAGATTTAAATACTCCCTTATCCTATTATAG 19 62 1 CCGCCAGTATGGAATACTCTATAATAGGATAAGGG 19 80 0 * ** **** * ** MAP Score: 4.23053 Motif 19 CTTTCTCAGGGATACCCTGTTAAAAAAGGAAT 0 34 0 TACTGCAGATGTAACCCTGCAGCTACAGAAAC 4 47 1 ACTCAAGATTGTAACCCTGTAGCTACAGAAAC 4 82 1 GATGAACGGATAAACCCTGCAGGAGCTTAATG 14 134 1 CAACATGGCTGGAACCATGATGCAAATCCATC 15 64 0 TATGGTATAAGAAACCCTAAAGTGGAGTTTAA 20 110 1 * ******* ** MAP Score: 2.93123 Motif 20 TTTGGTCCATTAGATGCCCCCTAATCCAAA 1 62 1 TTCAAATTATTAAATGATCCGGTGTGCCCC 1 216 1 TCTTCGGGTTTAGATGCTGCACCGGTCAGT 2 109 1 TCAGTCAAGATAAATTCCACAACTTACGGA 4 115 1 GTCGGGGGTTCAAATCCCCCCGGGTCCGCT 6 30 0 AGCTTTATACTAAATGCCCCTTAATTAATA 6 195 1 AATGCTCCACGGAATGCCCCAACAATGACA 10 20 0 TATATGCCCTGAAATGCTCCACGGAATGCC 10 32 0 GCGGTATATGCCCTGAAATGCTCC 10 42 0 TGAAGAATGATAGATCCTGCAGATGAACGG 14 113 1 TGTCAAGATTTAAATACTCCCTTATCCTAT 19 62 1 GATTTTATTACAGAGGCTCCTCTGGTAAAC 20 55 1 CTCTTTCGCATGGATACTCCTGTGCTGATG 20 180 1 ********** MAP Score: 1.61928