AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_operons017_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944244800 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH213 32 ferrous iron transport protein B #1 MTH214 123 iron repressor #2 MTH215 27 FUN34 related protein #3 MTH216 96 acetyl-CoA synthetase #4 MTH217 134 acetyl-CoA synthetase #5 MTH218 140 chaperonin #6 MTH219 51 unknown #7 MTH220 227 flavoprotein A homolog (II) #8 MTH221 97 unknown #9 MTH222 51 unknown #10 MTH223 163 unknown #11 MTH224 300 conserved protein #12 MTH231 256 conserved protein #13 MTH232 76 conserved protein #14 MTH233 56 conserved protein #15 MTH587 263 methionyl-tRNA synthetase #16 MTH856 172 zinc metalloproteinase #17 MTH858 101 GTP-binding protein, GTP1/OBG family #18 MTH936 36 iron repressor #19 MTH1362 103 unknown #20 MTH1363 133 cobalamin biosynthesis protein N #21 MTH1375 22 isoleucyl-tRNA synthetase #22 MTH1376 65 conserved protein #23 MTH1515 125 GTP-binding protein #24 MTH1621 83 GTP-binding protein, GTP1/OBG family Motif 1 TATTTATTATAAATTTTTTATTAATAACCTCGA 4 25 0 AGTTTCTCTCAACTTATATATTTTACTATTATT 4 73 0 CATCTCCAGTCAATTATTTATTTCCAGGAAGAG 5 21 1 GATGTGCATTCAGATGTTTATTAATTAAAAAAA 7 15 0 TCACCCCATAAAATTGTATAATTTAATAATGAA 7 187 1 CTGTATGTTGAACTTCATTATTAAATTATACAA 7 200 0 AATGGATGTTCATATTTATATTTATGGATATAG 8 51 0 TGGTGCCAGCCACATATTTATTACTTATACCCG 10 60 1 CATATAAATAAATGTTTATATTACTGGAATTCT 11 101 0 TACCATTTGCAATTTTTATATTAATCTGTGGTC 11 184 1 AGTGTGTATTAAACTTATTATTTAAAAATTTTG 11 252 0 TATAAACATGAAATTTTTTAATTAGTGATCCTG 12 63 0 TAAAAAATTTCATGTTTATATTATTTTTCCGTT 12 76 1 ATGCAGAAGACATTTATATATTTATTCGCCGTC 12 124 1 TTATAAGATTCAGCTTTTTAATAGATGACGGCG 12 150 0 AGTTAATATTAATTTAATTAATACGATTAACGG 13 15 0 TATGGATGTTCATTTAAATATTTTGAGTTCACA 16 55 1 TATATTGATAAATCAGTATATTTAAGTTTATGG 20 15 1 TCATTAAAGAAAATTTTATATTTTATTAAAGCA 20 73 1 TGTCCCATACCAACATTTTATTATAATATCCCG 23 87 1 AATATAAGGGAAAATATTTAATAATGGATAATA 24 49 1 ** * ******* MAP Score: 21.5109 Motif 2 CTGCTCTGTTCTATTAGGGGGG 0 0 0 ACCTGAATGGTGGGGGATCATCCCCC 1 4 1 TTCCCCTAGGGAATTTGAGGGGGATGATCCCC 1 22 0 TATGAAGGGAGGGTATGGGGGCCCAG 2 4 0 AGGAAACATAGTTTAAAGGATGCAGTGATTTA 6 29 1 AGGTGGTGCTGATTTTGGGGGGGGTGATTATA 7 156 0 GTTCTTGCTGGCATGTAGGAGGTTATT 10 5 0 CGAATGGTTAGTTTTATGGAGCCATTCCCTTT 11 29 1 TCCCTTTTAAGAATTTAGGGGGCACACCGGAT 11 54 1 TCCTTAATTTGGATTAGGGGGCATCTAATGGA 11 219 1 TACCTCCCATGAATCAAGGGGCTGTG 14 4 0 TCTGGTTCATGATTCAAGGAGGAGTTTGAG 15 243 1 TTGAGATAAAGTATAATGGAGGTGAAATT 20 114 1 AATGGTTTATGGTTTTGGGGTGATGATATAAA 22 40 0 * ** ******* MAP Score: 12.3478 Motif 3 AGCCTGAAAAATCAGCACCACAAATTGTATA 7 129 1 CACAAATTGTATAATCACCCCCCCCAAAATC 7 147 1 CCCCCCCAAAATCAGCACCACCTCACCCCAT 7 165 1 TTAATCACCTCAGTTTACATA 8 86 0 TCAAGGCCAGATCAGCATGCCCAAAACTGCG 15 68 0 TCTTGCGGTCATAATCACGGCAACACGCCGC 15 129 0 CAAAAGAATCATAAGCACCCACCTACAGAAT 16 119 1 ACTTATTTATATCATCACCCCAAAACCATAA 22 35 1 ATTCCATCAAATCAGCACGGAGGCAGATATT 23 22 1 ********* * MAP Score: 11.2751 Motif 4 TGTTTTAGAAAACCTTATATTGAATTAGGT 1 76 1 AGTCTGCAGAAACCAGAAACCCACAGGATC 5 79 1 TTATTTATAGAACCTTAAACCCATGGATAA 5 120 1 TGGACACTATATCCATAAATATAAATATGA 8 45 1 GATGAATTCCAACCATCAACCAATGTTTAA 11 141 0 TATAGAAGTAAACCGTAAATTAAACTGGAT 15 180 1 ATCCGGTGCTATCCATAAATGAACTGATTA 16 19 1 TTAAATGAACATCCATATACCAGTAATCAG 16 42 0 GGTTTAGGTAAACCTAAAACTTTATATATG 19 40 1 CCTTTAGGAAATCCTAAAATTTAGTTACAC 19 76 0 TTTAATATAAATCCATAAACTTAAATATAC 20 30 0 ATCACCCCAAAACCATAAACCATTACT 22 48 1 ********** MAP Score: 10.701 Motif 5 CTGGGCCCCCATACCCTCCCTTCATAT 2 0 1 GGGTCATAAACTGAACGCCGCCCTCATCGAAGAACTGAAA 3 39 1 GAAGAACTGAAAAGACACCTTCGCCATGAACTCGGACCC 3 67 1 CCACACGCCACCATCTCCAGTCAATTATTTATT 5 3 1 AGAGGAATCCATCTGCAACTCTTCCAGTAAGTCTGCAGAA 5 50 1 TTGTATAATCACCCCCCCCAAAATCAGCACCACCTCACCC 7 153 1 GTGAAAACACATGGACACTATATCCATAAATATAAATATG 8 34 1 CATGCCAGCAAGAACCGCCAGTTCCAGTTAGTCAGCAGTG 10 22 1 GCCTATTTTTAATAGCACCAATCCCATATCTATAACAGAG 10 116 1 TCAGGGAAACCACAACCTCAAGGCCAGATCAGCATGCCCA 15 76 0 CCTAAAATTTAGTTACACCTAAATCATATATAAAGTTTTA 19 54 0 TTATTTATATCATCACCCCAAAACCATAAACCATTACT 22 37 1 AAAATTACCCCTATTCCATCAAATCAGCACGG 23 2 1 TTCACTGGGTCTCAGCAATCTCTCCATTAAAGAGAGTGTC 23 51 1 * **** **** * MAP Score: 10.3425 Motif 6 AATTTTTTATTAATAACCTCGAAAAAAATGA 4 16 0 TAAATCACTGCATCCTTTAAAC 6 39 0 CCAGCCTGAAAAATCAGCACCACAAATTGTA 7 127 1 ACAAATTGTATAATCACCCCCCCCAAAATCA 7 148 1 ACCCCCCCCAAAATCAGCACCACCTCACCCC 7 163 1 TTAATCACCTCAGTTTACATAT 8 85 0 CTTGCGGTCATAATCACGGCAACACGCCGCT 15 128 0 CATATACCAGTAATCAGTTCATTTATGGATA 16 28 0 ATCAAAAGAATCATAAGCACCCACCTACAGA 16 117 1 GAGATATCTTTAATCCCCTCATGAGCAGTTA 17 25 0 CTTATTTATATCATCACCCCAAAACCATAAA 22 36 1 CTATTCCATCAAATCAGCACGGAGGCAGATA 23 20 1 AAAATCACCTGCATATAATATG 24 1 1 ******** ** MAP Score: 8.88282 Motif 7 ATATATTAATCTTGCTGCCTGCGCCGTAACT 12 194 1 TGGTGCTGATTTTTCAGGCTGGAATGGGTCA 7 118 0 ATTCACTATTTTTTCAGCCTGTTTTAGAAAA 1 57 1 TCACATCATATTTACTGGCAGACTAGTTGTC 7 46 1 TTTCTGCAGACTTACTGGAAGAGTTGCAGAT 5 60 0 CAATTATTTATTTCCAGGAAGAGGAATCCAT 5 31 1 AAGAGAAACTTTTGAAGGCTGATGGGAA 16 154 1 TGTTCTCTTTCTTTATGCCAGAAGAACGAAT 7 87 0 GGAAACATAGTTTAAAGGATGCAGTGATTTA 6 30 1 CTTACTGTATGTTGAACTTCA 7 216 0 ACTGGCGGTTCTTGCTGGCATGTAGGAGGTT 10 13 0 TTAAACTATGTTTCCTGCATTACTCATTTTG 6 14 0 *** ******* MAP Score: 5.59407 Motif 8 ACCTGAATGGTGGGGGATCATCCCCCTCAAATTCCCT 1 9 1 CTGGGCCCCCATACCCTCCCTTCATAT 2 0 1 AGTAAGTCTGCAGAAACCAGAAACCCACAGGATCTTCT 5 75 1 TAATAAACATCTGAATGCACATCACATCATATTTACTG 7 25 1 CCATTCCAGCCTGAAAAATCAGCACCACAAATTGTATA 7 122 1 GCACCACAAATTGTATAATCACCCCCCCCAAAATCAGC 7 143 1 TCACCCCCCCCAAAATCAGCACCACCTCACCCCATAAA 7 161 1 AAGGCCAGATCAGCATGCCCAAAACTGCGGTTCGATGT 15 59 0 GTACTGGATTCAGGGAAACCACAACCTCAAGGCCAGAT 15 87 0 TTTAAATATTTTGAGTTCACAGAACCACTGCATGTGAA 16 67 1 TGTATATACTTATTTATATCATCACCCCAAAACCATAA 22 28 1 * * * ** **** * MAP Score: 4.0618 Motif 9 ATTATAAATTTTTTATTAATAACCTCGAAA 4 23 0 AGATAATATTTATTATAAATTTTTTATTAA 4 34 0 TTATAATAAATATTATCTATCATGATTAAT 4 46 1 TATATTTTACTATTATTAATCATGATAGAT 4 60 0 GTTTCTCTCAACTTATATATTTTACTATTA 4 75 0 ATCTCCAGTCAATTATTTATTTCCAGGAAG 5 22 1 CTTCTACACAAATTATTTATAGAACCTTAA 5 108 1 ACTATTTTTTTTAATTAATAAACAT 7 5 1 GTTGAACTTCATTATTAAATTATACAATTT 7 197 0 ATGTTCATATTTATATTTATGGATATAGTG 8 49 0 GGTGCCAGCCACATATTTATTACTTATACC 10 61 1 ACTTGCCGCCTATTTTTAATAGCACCAATC 10 109 1 TAATATAAACATTTATTTATATGCTTTCAC 11 111 1 TTTGCAATTTTTATATTAATCTGTGGTCAT 11 189 1 CCTTCAGTGATTTTTTTAATGTGTGTCTTT 12 21 1 TAAACATGAAATTTTTTAATTAGTGATCCT 12 64 0 CGGCGAATAAATATATAAATGTCTTCTGCA 12 125 0 ACTCATGACCATATATTAATCTTGCTGCCT 12 184 1 TCCGGTCAGTTAATATTAATTTAATTAATA 13 25 0 AGACATGGACTCAAATAAATTTATATAGAA 15 157 1 ATATGGATGTTCATTTAAATATTTTGAGTT 16 54 1 CAAAAGTTTCTCTTATTAATTCTGTAGGTG 16 138 0 ACATTTACTTTAATATAAATCCATAAACTT 20 38 0 CATTAAAGAAAATTTTATATTTTATTAAAG 20 74 1 GGATGTATATACTTATTTATATCATCACCC 22 25 1 TCCCGGCACTACTTATTAAT 23 115 1 ********** MAP Score: 3.92339 Motif 10 ATGATTAATAATAGTAAAATATATAAGTTGAG 4 67 1 CCATCTCCAGTCAATTATTTATTTCCAGGAAG 5 20 1 TAAAATTGTATAATTTAATAATGAAGTTCAAC 7 195 1 TATCTATAACAGAGTTATTTATAACAGGTGT 10 142 1 AGTAATATAAACATTTATTTATATGCTTTCAC 11 109 1 ATTAAACTTATTATTTAAAAATTTTGGTCCAT 11 246 0 TATGCAGAAGACATTTATATATTTATTCGCCG 12 123 1 GCAGGCAGCAAGATTAATATATGGTCATGAGT 12 184 0 GGACTCAAATAAATTTATATAGAAGTAAACCG 15 163 1 ATATGGATGTTCATTTAAATATTTTGAGTTCA 16 54 1 ATAAATGACAAAACTTAAATAGGTT 18 21 1 GTAAACCTAAAACTTTATATATGATTTAGGTG 19 47 1 GGAGATATATTGATAAATCAGTATATTT 20 6 1 ATAAATCCATAAACTTAAATATACTGATTTAT 20 22 0 CTGGATGTATATACTTATTTATATCATCACCC 22 23 1 ATAAGGGAAAATATTTAATAATGGATAATAGA 24 52 1 * * ******** MAP Score: 2.70081 Motif 11 GCTCTGTTCTATTAGGGGGG 0 0 0 ACCTGAATGGTGGGGGATCATCCCC 1 5 1 CCCTAGGGAATTTGAGGGGGATGATCCCCC 1 21 0 TCAGTTCTTCGATGAGGGCGGCGTTCAGTT 3 47 0 TGGTGCTGATTTTGGGGGGGGTGATTATAC 7 155 0 CCAGTGAAAAAGTTAGGGCGAATGGTTAGT 11 11 1 CCTTTTAAGAATTTAGGGGGCACACCGGAT 11 56 1 CCTTAATTTGGATTAGGGGGCATCTAATGG 11 220 1 TGGTTTATGGTTTTGGGGTGATGATATAAA 22 40 0 ********** MAP Score: 1.75785 Motif 12 TTCCCTAGGGGAACCCATTCACTATTTTTTCA 1 41 1 CTGGGCCCCCATACCCTCCCTTCATA 2 4 1 GAACTGAAAAGACACCTTCGCCATGAACTCGG 3 70 1 CCACACGCCACCATCTCCAGTCAATTAT 5 6 1 TAAGTCTGCAGAAACCAGAAACCCACAGGATC 5 77 1 AAAACACATGGACACTATATCCATAAATATAA 8 37 1 GGGATGAATTCCAACCATCAACCAATGTTTAA 11 141 0 TCCATTAGATGCCCCCTAATCCAAATTAAGGA 11 219 0 TATTAATCTTGCTGCCTGCGCCGTAACTCTCT 12 197 1 CACAGCCCCTTGATTCATGGGAGGTA 14 4 1 TGGATTCAGGGAAACCACAACCTCAAGGCCAG 15 89 0 TTATACCACATCCGGTGCTATCC 16 1 1 AGAATCATAAGCACCCACCTACAGAATTAATA 16 123 1 TTTATATCATCACCCCAAAACCATAAACCATT 22 40 1 ******* * ** MAP Score: 0.185925