AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_operons018_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944244835
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH155	228	rubredoxin
#1	MTH220	227	flavoprotein A homolog (II)
#2	MTH756	145	rubrerythrin
#3	MTH822	171	rubrerythrin
#4	MTH1350	108	flavoprotein AI
#5	MTH1453	160	6Fe-6S prismane-containing protein

Motif 1
TTAATCTCAAAAAAATAATATCTGCAGGACCC	0	31	0
ATCTGAAGCAAAGAATAATATACGTCCAGATT	0	61	0
TTAGGAGAGTAATAAAGATATAGC        	0	214	1
TGTCCCTAAAAATAAATAAATAGTAGTAATAA	3	17	0
CTGTATCTGCAATAAAGATATATAACTGATGC	3	108	1
TGCTTATACCAGTAATAATATATTAGCATCAG	3	133	0
ATGGTATTGAAACAGTAATATAGTCCTTCAGA	4	24	0
ATGGAACAGAAAAAATTATATAGAAGTTCGTA	4	54	1
AAATAGTGACAAAAATTATATATAATTTACTG	5	68	1
          ** *** *****
MAP Score: 14.2557

Motif 2
GGACCCGGAGGTCCTTAAAAAAGAGTT         	0	1	0
GGACCTCCGGGTCCTGCAGATATTATTTTTTTGAGA	0	23	1
ACATCTGAATGCACATCACATCATATTTACTGGCAG	1	31	1
TCTTTCTTTATGCCAGAAGAACGAATTTTTGTAGCA	1	77	0
TGAAAAATCAGCACCACAAATTGTATAATCACCCCC	1	133	1
CACCACCTCACCCCATAAAATTGTATAATTTAATAA	1	180	1
CTCAACCACGTACCATCAAAATCCATGCCTCAGCAG	2	53	1
ATACTATGTAGAACATCATATTAAATCCTTTCATTT	2	101	0
AATTTGCAGTGTCCCTAAAAATAAATAAATAGTAGT	3	22	0
AGGAAGTAGAGGCCCTAAAATTAGATTAAAATTTGC	3	51	0
CAATACCATGGAACAGAAAAAATTATATAGAAGTTC	4	47	1
CCTTGCAGCGGTACTTCATTTTCAATCACCATATTA	5	108	0
GCAAGGTATGTGACTACATATATGATCCGGAG    	5	138	1
          * ** *** **   **
MAP Score: 12.6366

Motif 3
CCAGCCTGAAAAATCAGCACCACAAATTGTATAATC	1	127	1
ACCACAAATTGTATAATCACCCCCCCCAAAATCAGC	1	145	1
ACCCCCCCCAAAATCAGCACCACCTCACCCCATAAA	1	163	1
GGGCTTAGACATTTCATTCCCTCAACCACGTACCAT	2	33	1
CGTACCATCAAAATCCATGCCTCAGCAGCTGCCAGA	2	61	1
TCCTGATTGTATCTCCATTCCCCTTCTGTATCTGCA	3	83	1
TATATCCCTGGAGTCCCCTCCCCATCTATCTGTTAC	5	21	1
GGTGATTGAAAATGAAGTACCGCTGCAAGGTATGTG	5	114	1
          ** *** * ** *  *
MAP Score: 7.23107

Motif 4
 AACTCTTTTTTAAGGACCTCCGGGTCCTGCAGA	0	9	1
TCTTTTTATCAGCAGGTACCCTGCTCCTATGGCA	0	95	1
AATAAACATCTGAATGCACATCACATCATATTTA	1	26	1
CACAAATTGTATAATCACCCCCCCCAAAATCAGC	1	147	1
CCCCCCCAAAATCAGCACCACCTCACCCCATAAA	1	165	1
GCTTAGACATTTCATTCCCTCAACCACGTACCAT	2	35	1
TTTATTTATTTTTAGGGACACTGCAAATTTTAAT	3	29	1
TTAATCTAATTTTAGGGCCTCTACTTCCTGATTG	3	58	1
ACTTCCTGATTGTATCTCCATTCCCCTTCTGTAT	3	80	1
GTTATATCCCTGGAGTCCCCTCCCCATCTATCTG	5	19	1
TGATTGAAAATGAAGTACCGCTGCAAGGTATGTG	5	116	1
GGATCATATATGTAGTCACATACCTTGCAGCGGT	5	132	0
          ** *** ** ** *
MAP Score: 6.5835

Motif 5
GGACCTCCGGGTCCTGCAGATATTATTTTT	0	23	1
ATATTATTCTTTGCTTCAGATCTTCTTTTT	0	72	1
AGCAGGGTACCTGCTGATAAAAAGAAGATC	0	90	0
GACTAGTTGTCTGCTACAAAAATTCGTTCT	1	66	1
TATACAATTTGTGGTGCTGATTTTTCAGGC	1	130	0
ATGGGGTGAGGTGGTGCTGATTTTGGGGGG	1	166	0
TTATGTCTGGCAGCTGCTGAGGCATGGATT	2	72	0
ATCTTTATTGCAGATACAGAAGGGGAATGG	3	97	0
AGATATATAACTGATGCTAATATATTATTA	3	123	1
CAGTAATATAGTCCTTCAGACATAACATGG	4	14	0
          **********
MAP Score: 3.80047

Motif 6
AATTATCTATAAAATTCACTGCGAAAGCTTTA	0	175	0
TCCAGCCTGAAAAATCAGCACCACAAATTGTA	1	126	1
CACAAATTGTATAATCACCCCCCCCAAAATCA	1	147	1
CACCCCCCCCAAAATCAGCACCACCTCACCCC	1	162	1
ACGTACCATCAAAATCCATGCCTCAGCAGCTG	2	60	1
AAATTAGATTAAAATTTGCAGTGTCCCTAAAA	3	38	0
       AAAAAAATCACCTCACTGCTTATAC	3	156	0
AAAATTATATATAATTTACTGCCAGTTTTTAA	5	79	1
          ****** ** **
MAP Score: 3.22794

Motif 7
CAGATATTATTTTTTTGAGATTAATCTGGACGT	0	39	1
TGATAATTTGTTTAATGGGCTGCCATAGGAGCA	0	116	0
CTGCGAAAGCTTTATAGTGTTGAGAGACCCGGC	0	156	0
TAATTTTAAATTTTAGGAGAGTAATAAAGATAT	0	202	1
TGCCAGTAAATATGATGTGATGTGCATTCAGAT	1	33	0
GATTATACAATTTGTGGTGCTGATTTTTCAGGC	1	130	0
GGTGCTGATTTTGGGGGGGGTGATTATACAATT	1	151	0
AATTATACAATTTTATGGGGTGAGGTGGTGCTG	1	177	0
AATGAAAGGATTTAATATGATGTTCTACATAGT	2	102	1
ACTGCCAGTTTTTAATATGGTGATTGAAAATGA	5	96	1
          *** *** * ***
MAP Score: 1.89116