AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_operons019_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944244915 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH235 93 riboflavin-specific deaminase #1 MTH409 258 unknown #2 MTH410 62 unknown #3 MTH481 91 H+-transporting ATPase #4 MTH753 292 conserved protein #5 MTH1001 285 cation-transporting P-ATPase PacL #6 MTH1386 300 3-isopropylmalate dehydratase, LeuD subunit #7 MTH1390 98 riboflavin synthase beta subunit #8 MTH1493 78 cation transporting P-type ATPase related protein #9 MTH1494 266 conserved protein #10 MTH1495 194 ornithine cyclodeaminase #11 MTH1499 84 GTP cyclohydrolase II #12 MTH1500 22 conserved protein #13 MTH1501 189 phenylalanyl-tRNA synthetase alpha subunit #14 MTH1515 125 GTP-binding protein #15 MTH1516 152 cation-transporting P-ATPase PacL #16 MTH1534 40 aryldialkylphosphatase related protein #17 MTH1535 43 heavy-metal transporting CPx-type ATPase Motif 1 GGGAGAGAGATATATGGAATGGTGATAAC 3 4 0 TTCATGTGTATAGATGATCGGGTGATCCACA 4 6 0 GGCGCTTTATTAATTGAGGGGTTGACTGTACCTTA 4 237 0 TCAACATAAATAATGGTGAGGGGGAACCA 4 273 1 GCCCCGTCTATAAAAGACTTGGTGAGCTCCTGAAA 6 37 1 TCAAAGTATTTATAGGGCCGGGTGAAAATATAGAT 6 108 1 GTGATGATTATCGGCGGCAGGGTGCCTCCAG 9 6 0 AGTTCATTCATATACGTCCTGGTGGGGTACATGCT 9 96 0 ATGGACCATGTCTTCGAGAGGATGAGGATAGTTAG 9 141 1 CCTCATTATCTCTGAGAGGTGGTGGTCTATCTCTT 9 208 0 AGAACGTCCGTAGAGGACCGGGTGATGGTTCATCA 13 81 0 TACATTAATTTAATAATGAGGGTGGTGTGTTTCAA 15 119 1 TCAGGTTGAATCATGGATCTGGTGGAATGTAA 17 21 1 ** ** ****** MAP Score: 14.1192 Motif 2 GTATTTTTTCACTGAACATCAGATTCATGGACA 3 46 1 ATTCATGTGTATAGATGATCGGGTGATCCACA 4 9 0 TGGACCCCTTAATGAAAAACTGGCATGCATCAT 4 98 1 ACCGAATCCAGATGAAGTACCGCACAGAGGAAG 4 184 1 TGGAAATAACGTTGAAGAACAGCTGGACTTATG 5 119 1 TGAGAACAACATTGAATAACTGGACTGAGAGAA 5 159 1 AACTGGACTGAGAGAAAATCCGCAGACGGAACT 5 176 1 AAAGAATAACGTTGAAGAACAGCTGGTTGACAG 5 215 1 TCGCCTTCATACTGAAAAACTCGTCTGAATTTT 6 145 0 ACAGTTATCCAGTGAACATATGGGGACATCAGA 6 181 1 AGTCATCTGTGATGATTATCGGCGGCAGGGTGC 9 16 0 ATCTTTAAATATTGAACATCTCACATTTATTAG 10 154 0 GCTGAGACCCAGTGAATATCTGCCTCCGTGCTG 14 34 0 TTGGCTGAAGTTCAGGTTGAATCATG 17 3 1 * **** *** ** MAP Score: 13.2038 Motif 3 GTATGGGATTGATAACCCCTCAATATTTTC 1 53 0 GGAAAGCAGCCATGGCCCCTGTT 2 3 0 CCCCTATTAGCATGGACCCCTTAATGAAAA 4 86 1 CAGACTGCCCCATGGACCACTTGCTGGAAC 6 238 1 CTGGAACCTTTATGAACCCTTCAATTATTC 6 261 1 GAGCTGATAGCATGTACCCCACCAGGACGT 9 88 1 TCCTCACAAGGATGGACCATGTCTTCGAGA 9 130 1 AGATCGAAGAGATAGACCACCACCTCTCAG 9 202 1 GTTTCCGGTCCATGGACCGCCGGGACAGCC 10 84 1 AAGATTGGTAGATTGACCCTGA 10 182 1 TAGTTAAGGTGATGAACCATAACCGAGAAT 13 36 1 AAGCTCAGGTGATGAACCATCACCCGGTCC 13 72 1 ********** MAP Score: 12.6085 Motif 4 TCAAAATTAGAGAGATTAGGGGAATACCTGAAA 1 24 1 GAATACCTGAAAATATTGAGGGGTTATCAATCC 1 45 1 GGAGCTGTTGAAAGATACCTGGAGGTTTCCATA 1 117 1 GAGAGGTAATAGAGATACTCGGGGAAATAGGAG 1 218 1 TATTGGGGAGAGAGATATATGGAATGGTGATAA 3 11 0 CAGTGAAAAAATACATTATTGGGGAGAGAGATA 3 27 0 TCACTGAACATCAGATTCATGGACAAACTGATA 3 54 1 ACAAACTGATAAAGATATCCGGAAG 3 76 1 ATTCATGTGTATAGATGATCGGGTGATCCACA 4 9 0 TTTATGGTATTAAGATTTTGAGAGGATACAGTG 8 38 0 GATAATCATCACAGATGACTGGAAGGATCCTTA 9 29 1 GAGGATGAGGATAGTTAGCCGGACAAGGTCCCT 9 158 1 ACCACCTCTCAGAGATAATGAGGATACTGAACA 9 220 1 TTCAATATTTAAAGATTGGTAGATTGACCCTGA 10 171 1 TCTTTAATGGAGAGATTGCTGAGACCCAGTGAA 14 51 0 ATATACCTATATAGATTTAGGGGCTGATCTAC 16 9 0 * ***** **** MAP Score: 12.4186 Motif 5 AGGGGAATACCTGAAAATATTGAGGGGTTATC 1 41 1 CTTCCAGGGTATGGGATTGATAACCCCTCAAT 1 59 0 CAGTTTGTCCATGAATCTGATGTTCAGTGAAA 3 52 0 ATCTATACACATGAATTTGATGGGACAGTTAA 4 26 1 CAGAAGGTGACTGAAGATAATAAGGTACAGTC 4 217 1 TATATTTATTATGAGATGGATATGGAAATAAC 5 97 1 TGTACTCTAAATGGAGGTATTGA 7 85 1 AGAAATTGATATGGAGCTGATAGCATGTACCC 9 75 1 CTTCGAGAGGATGAGGATAGTTAGCCGGACAA 9 152 1 CTCAGAGATAATGAGGATACTGAACAGATACA 9 227 1 ACGTTCTAATCTGAGGGTGATGTATGGATTTA 13 109 1 ATAATGATCACTGGGGGTTCTGT 13 176 1 ACTCTCTTTAATGGAGAGATTGCTGAGACCCA 14 56 0 AGTCCCCTTGATGAAGCTGGTGGCTGTGCAAC 15 63 1 AGGGTATGGGATGAGAGTATTACATTAATTTA 15 99 1 TAATTTAATAATGAGGGTGGTGTGTTTCAAGT 15 124 1 AGGTTGAATCATGGATCTGGTGGAATGTAA 17 23 1 ****** ** ** MAP Score: 11.2252 Motif 6 CTTAAAATTCCACATTAATTTATAGGATGACA 0 43 1 TTCAACAGCTCCCCTTAAAGTGACGTCATTTT 1 97 0 ATGATCATATCACAGGAAAGGGCCAGAAAAAC 1 174 1 TCACAGTATTCCCCTGTAATGATGATTCAATA 2 38 1 TATCTCTCTCCCCAATAATGTATTTTTTCACT 3 27 1 CACTGAACATCAGATTCATGGACAAACTGATA 3 55 1 ATCATCTATACACATGAATTTGATGGGACAGT 4 23 1 TTAGCATGGACCCCTTAATGAAAAACTGGCAT 4 92 1 CATGCATCATCAGATGAATGAAGTGAAGAGAT 4 121 1 GGTTCCCCCTCACCATTATTTATGTTGATGGC 4 269 0 CTTTAATTAGCACATTTAATAAGTTCATTCTG 5 254 0 CCTCCTTTAGCAGAATAATTGAAGGGTTCATA 6 271 0 ATGAATAAGGCACAGGCAATAGCATTACTGAT 7 14 1 AGTACAAGTGCACCTGCAATGGTACTCAGGAC 7 59 0 GATACAGTGGCACCTGTAAGCGAGACCCATAA 8 15 0 ATGAACTCCTCACAAGGATGGACCATGTCTTC 9 124 1 TTGAACATCTCACATTTATTAGTGTTGGAAAT 10 144 0 CATAGGATATCACATTAATTTAATAACATGAG 15 13 1 AAGTGTAAGTCCCCTTGATGAAGCTGGTGGCT 15 56 1 ****** *** * MAP Score: 11.1117 Motif 7 TATAGATGTCATCCTATAAATTAATGTGGAA 0 50 0 TGGGATTGATAACCCCTCAATATTTTCAGGT 1 49 0 TATCAATCCCATACCCTGGAAGATTTGAAAA 1 69 1 CTTTCAACAGCTCCCCTTAAAGTGACGTCAT 1 100 0 TTAATTAACTGTCCCATCAAATTCATGTGTA 4 31 0 TATTAGCATGGACCCCTTAATGAAAAACTGG 4 90 1 AGGTACAGTCAACCCCTCAATTAATAAAGCG 4 239 1 AACCTTTATGAACCCTTCAATTATTCTGCTA 6 265 1 AGGTGCACTTGTACTCTAAATGGAGGTATTG 7 76 1 GTGCCACTGTATCCTCTCAAAATCTTAATAC 8 34 1 CAAAATCTTAATACCATAAAAAACATATATT 8 51 1 AACTATCCTCATCCTCTCGAAGACATGGTCC 9 143 0 GCCGGACAAGGTCCCTTAAAAGAGAAGAGAT 9 175 1 AATTACCCCTATTCCATCAAATCAGCACGGA 14 12 1 TTAATGTGATATCCTATGAAA 15 0 0 TCAAGTGTAAGTCCCCTTGATGAAGCTGGTG 15 54 1 GTAGATCAGCCCCTAAATCTATATAGGT 16 7 1 ******* *** MAP Score: 9.84159 Motif 8 AACAGGGGCCATGGCTGCTTTCCTTTTCTC 2 3 1 TTCTCTTTTAAGGGACCTTGTCCGGCTAACTATCCTC 9 164 0 CTGGAGGCACCCTGCCGCCGATAATCATCAC 9 4 1 TCATAGTATAAGGATCCTTCCAGTCATCTGTGATGAT 9 33 0 CCATGTAAATGGGTGCCTTGCCACCTTGATCCCGTAA 5 22 1 CAACCTTAATAGCTGCCATGACTGCCTCGAGGGTGGA 10 47 1 GCCTTCAATCAGGATCAGTCGCCTGATTTATTCGATA 13 142 1 AGCTCAGGTGATGAACCATCACCCGGTCCTCTACGGA 13 73 1 CCTCACAAGGATGGACCATGTCTTCGAGAGGATGAGG 9 131 1 GAAGATAATAAGGTACAGTCAACCCCTCAATTAATAA 4 229 1 GGGTTCATAAAGGTTCCAGCAAGTGGTCCATGGGGCA 6 243 0 TCCCGTAACTAGGTACCGAGCACTGGATGTGCACATC 5 51 1 TTAATGAATAAGGCACAGGCAATAGCATTACTGATAG 7 11 1 *** ** ** * * * MAP Score: 9.52042 Motif 9 AATGATGAAACCAGTGGAGGTTGAACC 0 3 0 ACTGTCCCATCAAATTCATGTGTATAGATGATCG 4 21 0 CCTCTGTGCGGTACTTCATCTGGATTCGGTAGTA 4 180 0 TAGGTACCGAGCACTGGATGTGCACATCAGTTTA 5 60 1 TATTTATTATGAGATGGATATGGAAATAACGTTG 5 99 1 GTCCTGAGTACCATTGCAGGTGCACTTGTACTCT 7 59 1 GTCTCGCTTACAGGTGCCACTGTATCCTCTCAAA 8 21 1 ATGAGTGATAGAAATTGATATGGAGCTGATAGCA 9 66 1 GATTCCACGGCTTCAGTTGTATCTGTTCAGT 9 245 0 CCTTATATTTCAAGTTGAAGTGAGATATAAGTCT 10 10 1 ACATTTATTAGTGTTGGAAATGAAATTAAAACCA 10 131 0 CATGAGTGGTGCATTTCAAGTGTAAGTCCCCTTG 15 39 1 CTTGATGAAGCTGGTGGCTGTGCAACCCCAAGGG 15 69 1 TGAGGGTGGTGTGTTTCAAGTGTAAAT 15 135 1 TTGGCTGAAGTTCAGGTTGAATCATGGATC 17 6 1 * * **** *** * MAP Score: 7.45058 Motif 10 CCTCACCATTATTTATGTTGATGGCGCTTTATT 4 261 0 GGCAGTCAATAGTTAAGGTGATGAACCATAACC 13 27 1 TGGATATGGAAATAACGTTGAAGAACAGCTGGA 5 113 1 TATATGAAAGAATAACGTTGAAGAACAGCTGGT 5 209 1 GACGTTCTAATCTGAGGGTGATGTATGGATTTA 13 108 1 CCTTATATTTCAAGTTGAAGTGAGATATAA 10 7 1 TTAATTTAATAATGAGGGTGGTGTGTTTCAAGT 15 123 1 CATGGCAGCTATTAAGGTTGATCAGACTTATAT 10 34 0 TAATGTGGAATTTTAAGTCGAAGAATGATGAAA 0 27 0 CCCTAATCTCTCTAATTTTGATGAGATCTCATT 1 12 0 * * * ******* MAP Score: 7.30466 Motif 11 CAGTTTGTCCATGAATCTGATGTTCAGTGA 3 54 0 ACCATTATTTATGTTGATGGCGCTTTATTA 4 260 0 AACATAAATAATGGTGAGGGGGAACCA 4 275 1 TTATTATGAGATGGATATGGAAATAACGTT 5 102 1 TGGACTTATGATGGATATGAGAACAACATT 5 142 1 AGTGATAATAATGGTCCTGAGTACCATTGC 7 46 1 GATGTTTATGGGTCTCGCTTA 8 1 1 AGAAATTGATATGGAGCTGATAGCATGTAC 9 75 1 CCGGCGGTCCATGGACCGGAAACTCCACCC 10 77 0 GTCAATAGTTAAGGTGATGAACCATAACCG 13 31 1 AGTCCCCTTGATGAAGCTGGTGGCTGTGCA 15 63 1 AGGTTGAATCATGGATCTGGTGGAATGTAA 17 23 1 ********** MAP Score: 6.55923 Motif 12 TATCAATCCCATACCCTGGAAGATTTGAAAA 1 69 1 TGAATCATCATTACAGGGGAATACTGTGAGA 2 36 0 CCGATCATCTATACACATGAATTTGATGGGA 4 20 1 TTACTACCGAATCCAGATGAAGTACCGCACA 4 179 1 GGATATGGAAATAACGTTGAAGAACAGCTGG 5 114 1 ATATGAAAGAATAACGTTGAAGAACAGCTGG 5 210 1 TACTGAACAGATACAACTGAAGCCGTGGAAT 9 244 1 CCTTATATTTCAAGTTGAAGTGAGATATA 10 8 1 GTGATGAACCATAACCGAGAATAAAGTCAAG 13 44 1 TCAAGGGGACTTACACTTGAAATGCACCACT 15 43 0 ATTTACACTTGAAACACACCACC 15 139 0 AGATCCATGATTCAACCTGAACTTCAGCCAA 17 10 0 ****** **** MAP Score: 4.74537 Motif 13 ACGTCACTTTAAGGGGAGCTGTTGAAAGATACCTG 1 103 1 AAAAATACATTATTGGGGAGAGAGATATATGGAAT 3 19 0 TTCATGTGTATAGATGATCGGGTGATCCACA 4 6 0 TCCATGCTAATAGGGGAGGCGATCATAAAATTCGA 4 67 0 TGCCAGTTTTTCATTAAGGGGTCCATGCTAATAGG 4 88 0 GGCGCTTTATTAATTGAGGGGTTGACTGTACCTTA 4 237 0 TCAACATAAATAATGGTGAGGGGGAACCA 4 273 1 AACATTGAATAACTGGACTGAGAGAAAATCCGCAG 5 166 1 GTGATATTATTAATCAAGTGAGGGACC 6 2 0 TCAAAGTATTTATAGGGCCGGGTGAAAATATAGAT 6 108 1 CTTGTACTCTAAATGGAGGTATTGA 7 83 1 GGATCCTTATACTATGAGTGATAGAAATTGATATG 9 53 1 ATGGACCATGTCTTCGAGAGGATGAGGATAGTTAG 9 141 1 GGTCCCTTAAAAGAGAAGAGATCGAAGAGATAGAC 9 184 1 ATCCTCATTATCTCTGAGAGGTGGTGGTCTATCTC 9 210 0 GAACAGATACAACTGAAGCCGTGGAATC 9 248 1 TGGCAGTCAATAGTTAAGGTGATGAACCATAACCG 13 26 1 AGAACGTCCGTAGAGGACCGGGTGATGGTTCATCA 13 81 0 ACACTCTCTTTAATGGAGAGATTGCTGAGACCCAG 14 55 0 TTAATTTAATAACATGAGTGGTGCATTTCAAGTGT 15 27 1 ** **** ** ** MAP Score: 3.66316 Motif 14 ATTTTTCAAATCTTCCAGGGTATGGGATTGAT 1 70 0 GCCACCAGCTTCATCAAGGGGACTTACACTTG 15 55 0 ACTGATGTGCACATCCAGTGCTCGGTACCTAG 5 59 0 TGGCTGTGCAACCCCAAGGGTATGGGATGAGA 15 83 1 GGTTCAACCTCCACTGGTTTCATCATTC 0 6 1 TTCTATGGAAACCTCCAGGTATCTTTCAACAG 1 121 0 AAATGACGTCACTTTAAGGGGAGCTGTTGAAA 1 98 1 ACAGAACCCCCAGTGATCATTATCGAA 13 172 0 GTCCAGCTGTTCTTCAACGTTATTTCCATATC 5 115 0 AACCAGCTGTTCTTCAACGTTATTCTTTCATA 5 211 0 CTTATATCTCACTTCAACTTGAAATATAAGG 10 9 0 TGAGTGGTGCATTTCAAGTGTAAGTCCCCTTG 15 41 1 CGAAAGACAGTTATCCAGTGAACATATGGGGA 6 175 1 TGCCAGTTTTTCATTAAGGGGTCCATGCTAAT 4 91 0 TCTGTGCGGTACTTCATCTGGATTCGGTAGTA 4 180 0 CATGAATCTGATGTTCAGTGAAAAAATACATT 3 43 0 ** ******* * MAP Score: 3.33412 Motif 15 CATCAGATTCATGGACAAACTGATAAAGATATCC 3 62 1 TGTGGATCACCCGATCATCTATACA 4 1 1 TGGAAATAACGTTGAAGAACAGCTGGACTTATGA 5 119 1 AAAGAATAACGTTGAAGAACAGCTGGTTGACAGA 5 215 1 AGACTGCCCCATGGACCACTTGCTGGAACCTTTA 6 239 1 CAGGACGTATATGAATGAACTCCTCACAAGGATG 9 110 1 CCTCACAAGGATGGACCATGTCTTCGAGAGGATG 9 131 1 GATCGAAGAGATAGACCACCACCTCTCAGAGATA 9 203 1 TGCCTCGAGGGTGGAGTTTCCGGTCCATGGACCG 10 69 1 ATTCTCGGTTATGGTTCATCACCTTAACTATTGA 13 32 0 GGACCGGGTGATGGTTCATCACCTGAGCTTGACT 13 68 0 TAGAACGTCCGTAGAGGACCGGGTGATGGTTCAT 13 83 0 GTAGATCAGCCCCTAAATCTATAT 16 0 1 ***** ** * * * MAP Score: 2.42306 Motif 16 AACAGGGGCCATGGCTGCTTTCCTTT 2 5 1 CTGAACATCAGATTCATGGACAAACTGATAA 3 57 1 AATTAATAAAGCGCCATCAACATAAATAATG 4 257 1 TTCACAGACTGCCCCATGGACCACTTGCTGG 6 234 1 TCACAAGGATGGACCATGTCTTCGAGAGGAT 9 133 1 TGGAGTTTCCGGTCCATGGACCGCCGGGACA 10 80 1 TTAAGGTGATGAACCATAACCGAGAATAAAG 13 39 1 CTCAGGTGATGAACCATCACCCGGTCCTCTA 13 75 1 AGTTCAGGTTGAATCATGGATCTGGTGGAAT 17 18 1 ** ******** MAP Score: 1.09321 Motif 17 AAAATGAGATCTCATCAAAATTAGAGAG 1 6 1 ATTGGAGAAATGATCATATCACAGGAAAGGGC 1 165 1 TCGAATTTTATGATCGCCTCCCCTATTAGCAT 4 67 1 CCTATTAGCATGGACCCCTTAATGAAAAACTG 4 88 1 ATCCACAGAATGAACTTATTAAATGTGCTAAT 5 249 1 AAAGACTTGGTGAGCTCCTGAAAACTAATAAG 6 49 1 GGAACCTTTATGAACCCTTCAATTATTCTGCT 6 263 1 CGTATATGAATGAACTCCTCACAAGGATGGAC 9 115 1 CTTTAAATATTGAACATCTCACATTTATTAGT 10 153 0 *** * ****** MAP Score: 0.438341