AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_operons022_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944245039 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH442 195 excinuclease ABC subunit B #1 MTH443 41 excinuclease ABC subunit A #2 MTH1178 107 conserved protein #3 MTH1321 184 signal recognition particle protein SRP54 #4 MTH1455 192 threonyl-tRNA synthetase #5 MTH1456 198 chromosome partitioning protein Soj #6 MTH1708 300 carbon monoxide dehydrogenase, alpha subunit #7 MTH1710 21 carbon monoxide dehydrogenase, alpha subunit #8 MTH1840 158 cell division inhibitor Motif 1 TTATCATTACCATCCTCTGATTTATGTTTA 0 11 1 CGTGTTCCATAATCCTGTGATGATACCCCC 0 54 0 ACACGTGGGATACCCTGTCAGATATGAGAC 0 79 1 TGCCGCCCACCACCCTGTGACCTTTATATG 3 84 1 CAATGAGGTACATTCTGTGCTGATTGAAAT 4 42 0 CCTTAAGGGTCATCATCTGAACATTACTAG 4 89 1 AATATTTAAAAACCCTCACCTTAAAAACAA 4 141 1 TCTCCCATCTCATCACCTGCTGGATCTAAG 5 73 0 TTACAAGAACCCTCCTGTCAAGGAGGAAAG 5 173 0 GGTAATATCGCACCCTGAGCGGAGGGATGA 6 88 1 TACCATTATACACCCTGAGACCCCCGGCAA 6 121 0 TAATGGTAATAATCCTCCGCCTATCTGGCA 6 143 1 CTATCTGGCACATCCCCACCATTTATTAAA 6 163 1 CCGGATCGGATATCCTGTCCAGAACTAACA 8 31 1 ********** MAP Score: 11.8557 Motif 2 ATGGAACACGTGGGATACCCTGTCAGATATGAGAC 0 74 1 GAGGGGCTTGTGGGACAGCCATTTAGGGAGGGGTC 2 11 1 GACCTTTATATGGCACAGCCCATCCACCACTCTTA 3 102 1 TAACTATTGTTGGGATCACCTTATATAATTAAGAG 3 131 0 ATGACCCTTAAGGGATCTCCTGAACCTCTTCAATG 4 67 0 TTACTAATCTTCGGTTTCCCTTATATTGTGGTAAT 6 59 1 CCCTGAGCGGAGGGATGACCATTGCCGGGGGTCTC 6 100 1 TCCGCCTATCTGGCACATCCCCACCATTTATTAAA 6 158 1 GTTGCCCGGATCGGATATCCTGTCCAGAACTAACA 8 26 1 ****** ** * * MAP Score: 9.9642 Motif 3 TAAAACAAGTTCAGTGGGGGTATCATCACAGGA 0 39 1 GACAGCCATTTAGGGAGGGGTCTGGCTTTTCAG 2 24 1 CATCTGAACATTACTAGGGGTTTAAAGATCCAC 4 102 1 TTATTGTTTTTAAGGTGAGGGTTTTTAAATATT 4 141 0 CTTTCCTCCTTGACAGGAGGGTTCTTGTAATCG 5 173 1 TATCGCACCCTGAGCGGAGGGATGACCATTGCC 6 93 1 GGGATGACCATTGCCGGGGGTCTCAGGGTGTAT 6 111 1 ATGTGCCAGATAGGCGGAGGATTATTACCATTA 6 143 0 GACTGATTATTATCTGGAGGTATTGGA 8 141 1 * ** ****** * MAP Score: 9.94384 Motif 4 TTTATCATTACCATCCTCTGATTTAT 0 4 1 CCCACGTGTTCCATAATCCTGTGATGATACCC 0 56 0 ATATGAGACTCCAGACTCAACTTTATGTATCC 0 100 1 TGGCTGTCCCACAAGCCCCTCA 2 0 0 AGCTGAAAAGCCAGACCCCTCCCTAAATGGCT 2 27 0 AGTTTTTGCACCAGCACCATGCAATCAGCTGA 2 53 0 GATCTGCCGCCCACCACCCTGTGACCTTTATA 3 80 1 CTTTATATGGCACAGCCCATCCACCACTCTTA 3 105 1 ACTAGGGGTTTAAAGATCCACCGGAGCAATAT 4 114 1 GAGCAATATTTAAAAACCCTCACCTTAAAAAC 4 137 1 AATTACCTCTCCCATCTCATCACCTGCTGGAT 5 78 0 GTCGATTACAAGAACCCTCCTGTCAAGGAG 5 178 0 AGACCCCCGGCAATGGTCATCCCTCCGCTCAG 6 102 0 TGTATAATGGTAATAATCCTCCGCCTATCTGG 6 139 1 GCCTATCTGGCACATCCCCACCATTTATTAAA 6 161 1 TGAATTCCTCCATTATCCTGA 7 0 0 *** ******* MAP Score: 8.17902 Motif 5 CTCCAGACTCAACTTTATGTATCCTGGCAAA 0 108 1 CTGGTGCAAAAACTATATATACAAGTTTTGA 2 71 1 TCCTTTGAGGACCTATATTAAGATCCTCAAT 3 51 0 CCACCCTGTGACCTTTATATGGCACAGCCCA 3 93 1 AGGTGATCCCAACAATAGTTAATGATTATCC 3 145 1 GATCCACCGGAGCAATATTTAAAAACCCTCA 4 128 1 TAAAAACAATAACATTAGTTATTCTTACCAA 4 162 1 AATCACTTCAACCTTTATATTATATGAATGT 6 27 0 GAGGATTATTACCATTATACACCCTGAGACC 6 129 0 ATTTTATGGAATCTATATATAAACTTTGTGC 6 225 0 AATTAAAAACATCATTATAAATCATTAATAA 6 253 1 GTCCAGAACTAACAATATTTTTATACCGGAC 8 47 1 CGACGTGTGTAACAATATTTATATCGGAATG 8 111 1 * ********* MAP Score: 7.66209 Motif 6 TCATATCTGACAGGGTATCCCACGTGTTCCA 0 75 0 TCTGGCTTTTCAGCTGATTGCATGGTGCTGG 2 44 1 TTAATTATATAAGGTGATCCCAACAATAGTT 3 134 1 TCCATCACTGCAGGTGAAACC 3 173 1 TGAAGAGGTTCAGGAGATCCCTTAAGGGTCA 4 70 1 TAGTAATGTTCAGATGATGACCCTTAAGGGA 4 87 0 TATTCTTACCAAGGTGATGGC 4 181 1 TTAGATCCAGCAGGTGATGAGATGGGAGAGG 5 74 1 TCAGGATAATGGAGGAATTCA 7 1 1 TAGTTCTGGACAGGATATCCGATCCGGGCAA 8 27 0 ******** ** MAP Score: 7.42764 Motif 7 GGGTCAACTTATATATACCTTTGCCAGGATA 0 127 0 ATCACTTAAAATAAGAACCTCATTCTATTGT 0 172 0 CAAAACTTGTATATATAGTTTTTGCACCAGC 2 70 0 GGGCTGTGCCATATAAAGGTCACAGGGTGGT 3 92 0 AACCCTCACCTTAAAAACAATAACATTAGTT 4 151 1 AATTTATAACTTATAAAGTATATGTGATAAG 5 38 0 ACTTTATAAGTTATAAATTATAACTTAGATC 5 50 1 CCTTTATATTATATGAATGTTTGATATAGTG 6 16 0 CATTCATATAATATAAAGGTTGAAGTGATTA 6 28 1 CCACCATTTATTAAAAAGGTCCATGTCTTTA 6 178 1 TGGAATCTATATATAAACTTTGTGCATTGTC 6 219 0 TTCCATAAAATTAAAAACATCATTATAAATC 6 245 1 AAAAACATCATTATAAATCATTAATAATTGT 6 257 1 TAAGTCCGGTATAAAAATATTGTTAGTTCTG 8 50 0 AGTCATTCCGATATAAATATTGTTACACACG 8 114 0 ******** ** MAP Score: 7.31144 Motif 8 TATAATCCCACAATAGAATGAGGTTCTTATTTTA 0 163 1 TGTGGGACAGCCATTTAGGGAGGGGTCTGGCTTT 2 19 1 TAATGATTATCCATCACTGCAGGTGAAACC 3 164 1 TCTCCTGAACCTCTTCAATGAGGTACATTCTGTG 4 53 0 GCACTTTCCTCCTTGACAGGAGGGTTCTTGTAAT 5 170 1 CTTCGGTTTCCCTTATATTGTGGTAATATCGCAC 6 67 1 TAATATCGCACCCTGAGCGGAGGGATGACCATTG 6 90 1 GGAGGGATGACCATTGCCGGGGGTCTCAGGGTGT 6 108 1 AATGACTGATTATTATCTGGAGGTATTGGA 8 138 1 ** * * ****** MAP Score: 6.4506 Motif 9 TTATCATTACCATCCTCTGATTTATGTTTAAAACA 0 11 1 ACACGTGGGATACCCTGTCAGATATGAGACTCCAG 0 79 1 TGCCGCCCACCACCCTGTGACCTTTATATGGCACA 3 84 1 TTTAATCTGATAACTTATAACTTATCACATATACT 5 18 1 TTATAATTTATAACTTATAAAGTATATGTGATAAG 5 38 0 AAGACAACAACAGCCGTTAATCTATCAGCAGCACT 5 140 1 ATAATCACTTCAACCTTTATATTATATGAATGTTT 6 25 0 ** *** * * *** MAP Score: 2.92134 Motif 10 AATGGTAATAATCCTCCGCCTATCTGGCAC 6 144 1 GGCACAGCCCATCCACCACTCTTAATTATA 3 113 1 GTTGTTGTCTTTCCACAGCCACCCTTCTGG 5 121 0 AGGATCTGCCGCCCACCACCCTGTGACCTT 3 78 1 TAAATGGCTGTCCCACAAGCCCCTCA 2 6 0 TATATAGTTTTTGCACCAGCACCATGCAAT 2 60 0 GCAATGGTCATCCCTCCGCTCAGGGTGCGA 6 95 0 TGAATTCCTCCATTATCCTGA 7 7 0 GTTAATGATTATCCATCACTGCAGGTGAAA 3 162 1 GGGTTTAAAGATCCACCGGAGCAATATTTA 4 119 1 CTATATTAAGATCCTCAATCATATCTAGAT 3 40 0 ATCCCACGTGTTCCATAATCCTGTGATGAT 0 60 0 ACATTTCCATTTCAATCAGCACAGAATGTA 4 34 1 GAATTCAATTTTCAACAATCCCGATGC 3 7 0 TGAAATATAATCCCACAATAGAATGAGGTT 0 158 1 ********** MAP Score: 1.91286 Motif 11 GGGACAGCCATTTAGGGAGGGGTCTGGCTTTTCAGCT 2 22 1 ATATAAAGGTCACAGGGTGGTGGGCGGCAGATCCTTT 3 76 0 AATCATAAACCAGAAGGGTGGCTGTGGAAAGACAACA 5 112 1 CTTTCCTCCTTGACAGGAGGGTTCTTGTAATCGAC 5 173 1 GGGATGACCATTGCCGGGGGTCTCAGGGTGTATAATG 6 111 1 ACCTTTTTAATAAATGGTGGGGATGTGCCAGATAGGC 6 161 0 GACTGATTATTATCTGGAGGTATTGGA 8 141 1 * * ** *** * ** MAP Score: 0.127332