AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_operons023_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944245092
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH62	132	molybdenum cofactor biosynthesis A (MoaA) related protein
#1	MTH114	300	arylsulfatase regulatory protein
#2	MTH150	75	conserved protein
#3	MTH809	138	molybdenum cofactor biosynthesis protein MoaC
#4	MTH831	25	molybdenum cofactor biosynthesis MoaA homolog
#5	MTH1550	40	molybdenum cofactor biosynthesis MoaA
#6	MTH1551	139	molybdopterin-guanine dinucleotide biosynthesis protein B related
#7	MTH1786	82	unknown
#8	MTH1864	109	phosphoribosylformylglycinamidine synthase II related protein
#9	MTH1865	37	conserved protein

Motif 1
GATGATGAATACATTGATGAGGGGTATATGATT	0	11	0
CTGGGTGACAGGATAGAGGAGTGCCCCTGCGGC	1	78	1
CTAGACATGAAAATGGAGGAGTTTTTAAGTAAG	1	143	1
AGTTAAGAGGAGATTCATGGATGAGCACAAGTC	1	205	1
CAAGTCAAGGACGTCCATGAAGGAGATAGTCTG	1	232	1
CTTCTAGTATATATTCATGGAGCCGGTGGCGA 	2	9	0
TCCATCAAAGAAATTCATGAGTGATGATAATGA	3	12	1
ATGGATTCTAAAATACATGGGTGAATTCTTTCA	3	42	0
ATGTATTTTAGAATCCATCAAAGAAATTCATGA	3	57	1
TCCATCAAAGAAATTCATGAGTGATGATAATGA	3	70	1
ATGGATTCTAAAATACATGGGTGAATTCTTTCA	3	100	0
ATGTATTTTAGAATCCATCAAAGAAATTCATGA	3	115	1
GTTAAATTTAGAATAGATGGAAGGGAACTTGAG	6	22	0
TGTATCTGTAAGATCCCTGAGATCCCCCCGGCG	7	11	0
TCTTACAGATACATTCCGGAGGGTTGCTGAAAA	7	31	1
          * ** ****** *
MAP Score: 24.3764

Motif 2
ATATACCCCTCATCAATGTATTCATCATCAACGTTAAT	0	15	1
ATGTATTCATCATCAACGTTAATGGTGATCCTGCTCTG	0	30	1
GACTTGTGCTCATCCATGAATCTCCTCTTAACTACCTT	1	200	0
CTATCTCCTTCATGGACGTCCTTGACTTGTGCTCATCC	1	223	0
      AATCCATCAAAGAAATTCATGAGTGATGATAA	3	4	1
CAAAGAAATTCATGAGTGATGATAATGAAAGAATTCAC	3	17	1
GAGTGATGATAATGAAAGAATTCACCCATGTATTTTAG	3	30	1
TTTTAGAATCCATCAAAGAAATTCATGAGTGATGATAA	3	62	1
CAAAGAAATTCATGAGTGATGATAATGAAAGAATTCAC	3	75	1
GAGTGATGATAATGAAAGAATTCACCCATGTATTTTAG	3	88	1
TTTTAGAATCCATCAAAGAAATTCATGA          	3	120	1
CTGAAGATAACATGAAGGGGACTGTTAAATTTAGAATA	6	40	0
TTCATGTTATCTTCAGTGTCCTTTTTATGGTGAAACTT	6	62	1
GAAAACCCTGCTTCAAGGATACTTCTAAAGCAT     	7	59	1
          ****** *    *  * *
MAP Score: 18.9548

Motif 3
ACATGCCAAAATTGACCGCCACATATATACCATACGAAGGATA	0	97	1
GAGGGGTTTTACCCTCAACCTCAAGGGTTCTCTTTGCCCTGCA	1	27	0
TCAACAACATACTTACCGCCGCAGGGGCACTCCTCTATCCTGT	1	85	0
ACACTTACTTAAAAACTCCTCCATTTTCATGTCTAGACCTCTA	1	136	0
TTTCTCACAGACTATCTCCTTCATGGACGTCCTTGACTTGTGC	1	229	0
AGTCTGTGAGAAATGCGGCCACATCTTTGAGACCGCAGATTAG	1	259	1
       TCCAGGTTCAGCCTCAAGTTCCCTTCCATCTATTCT	6	3	1
TCTAAATTTAACAGTCCCCTTCATGTTATCTTCAGTGTCCTTT	6	43	1
GGGTTGCTGAAAACCCTGCTTCAAGGATACTTCTAAAGCAT  	7	51	1
ACTTTTAAAAAGGATCTGCTACAGATTATAGATAATACAGGTG	8	35	1
          *    * *** **  *   *  *
MAP Score: 14.7533

Motif 4
TGAATACATTGATGAGGGGTATATGATTT  	0	8	0
CACCATTAACGTTGATGATGAATACATTGAT	0	26	0
CATCATCAACGTTAATGGTGATCCTGCTCTG	0	37	1
TCCGCTGGCAGATATGGTTGAAAACATGCCA	0	74	1
AAAGAGAACCCTTGAGGTTGAGGGTAAAACC	1	35	1
CGGTAAGTATGTTGTTGAGGAGATAATAGAG	1	110	1
TGAGACCGCAGATTAGGTGGTTTT       	1	286	1
ATTCATGAGTGATGATAATGAAAGAATTCAC	3	24	1
ATTCATGAGTGATGATAATGAAAGAATTCAC	3	82	1
CTTGACTGAGCTTCATGTGGA          	5	0	0
TGGAAGGGAACTTGAGGCTGAACCTGGA   	6	7	0
GTTAAATTTAGAATAGATGGAAGGGAACTTG	6	24	0
CTGAAGATAACATGAAGGGGACTGTTAAATT	6	47	0
AAGGTTATGAGTAGAGAGTGAGGTGAAGAGG	6	118	1
   CACAATTGAAGTGGAGGACTTGGAAACT	8	7	1
TCTTTGTATCGTTTAGGTGTATCTCACAGTG	8	85	0
        AAGATTATGTGGAGATTGATTTG	9	2	1
          ******* ***
MAP Score: 13.5929

Motif 5
ATCATCAACGTTAATGGTGATCCTGCTCTGA	0	38	1
GTGATCCTGCTCTGAGGTGGTCCGCTGGCAG	0	54	1
GTATGGTATATATGTGGCGGTCAATTTTGGC	0	101	0
TAAGTATGTTGTTGAGGAGATAATAGAGGTC	1	113	1
ACAAGGTAGTTAAGAGGAGATTCATGGATGA	1	198	1
TGAGACCGCAGATTAGGTGGTTTT       	1	286	1
AAGAAATTCATGAGTGATGATAATGAAAGAA	3	19	1
AAGAAATTCATGAGTGATGATAATGAAAGAA	3	77	1
CAGTGTCCTTTTTATGGTGAAACTTTATCAT	6	75	1
ATGAGTAGAGAGTGAGGTGAAGAGG      	6	124	1
   CACAATTGAAGTGGAGGACTTGGAAACT	8	7	1
     AAGATTATGTGGAGATTGATTTGGGG	9	5	1
          * *********
MAP Score: 6.19811

Motif 6
TGCCAGCGGACCACCTCAGAGCAGGATCAC	0	54	0
CCAAAATTGACCGCCACATATATACCATAC	0	102	1
AAACCCCTCCCTACCACCTGGGTGACAGGA	1	61	1
AACATACTTACCGCCGCAGGGGCACTCCTC	1	93	0
CTTGTCCCTGCAGCCACAGACAGGACACTT	1	173	0
GTGAGAAATGCGGCCACATCTTTGAGACCG	1	264	1
          TCGCCACCGGCTCCATGAAT	2	0	1
       AATCCATCAAAGAAATTCATGAG	3	3	1
ATTTTAGAATCCATCAAAGAAATTCATGAG	3	61	1
ATTTTAGAATCCATCAAAGAAATTCATGA 	3	119	1
TAAAAAGGATCTGCTACAGATTATAGATAA	8	40	1
          **********
MAP Score: 4.40574

Motif 7
AAAGAGAACCCTTGAGGTTGAGGGTAAAACC	1	35	1
AGGTGGTAGGGAGGGGTTTTACCCTCAACCT	1	49	0
CATGAAAATGGAGGAGTTTTTAAGTAAGTGT	1	148	1
AGGTAGTTAAGAGGAGATTCATGGATGAGCA	1	201	1
TATCATCACTCATGAATTTCTTTGATGGATT	3	10	0
AGAATTCACCCATGTATTTTAGAATCCATCA	3	46	1
TATCATCACTCATGAATTTCTTTGATGGATT	3	68	0
AGAATTCACCCATGTATTTTAGAATCCATCA	3	104	1
         TCATGAATTTCTTTGATGGATT	3	126	0
      TCCACATGAAGCTCAGTCAAGCAGG	5	4	1
CTCAGTCAAGCAGGTGACTGAAACATTAT  	5	21	1
TGGAAGGGAACTTGAGGCTGAACCTGGA   	6	7	0
    TCGCCGGGGGGATCTCAGGGATCTTAC	7	6	1
GTATCGTTTAGGTGTATCTCACAGTGTATTC	8	80	0
  AAGATTATGTGGAGATTGATTTGGGGAAA	9	8	1
          **** ******
MAP Score: 3.03694

Motif 8
ACCCTCAACCTCAAGGGTTCTCTTTGCCCTG	1	29	0
CAGGTGGTAGGGAGGGGTTTTACCCTCAACC	1	50	0
GACATGAAAATGGAGGAGTTTTTAAGTAAGT	1	146	1
TGAGCACAAGTCAAGGACGTCCATGAAGGAG	1	226	1
ATCTGCGGTCTCAAAGATGTGGCCGCATTTC	1	268	0
    AATCCATCAAAGAAATTCATGAGTGAT	3	6	1
GTGATGATAATGAAAGAATTCACCCATGTAT	3	32	1
TGAATTTCTTTGATGGATTCTAAAATACATG	3	56	0
GTGATGATAATGAAAGAATTCACCCATGTAT	3	90	1
TGAATTTCTTTGATGGATTCTAAAATACATG	3	114	0
TAGAATAGATGGAAGGGAACTTGAGGCTGAA	6	16	0
GAAGATAACATGAAGGGGACTGTTAAATTTA	6	45	0
AAACCCTGCTTCAAGGATACTTCTAAAGCAT	7	61	1
          ******* ***
MAP Score: 2.19992