AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_operons023_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944245107 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH62 132 molybdenum cofactor biosynthesis A (MoaA) related protein #1 MTH63 300 conserved protein #2 MTH114 300 arylsulfatase regulatory protein #3 MTH150 75 conserved protein #4 MTH806 240 protease IV #5 MTH807 75 thioredoxin #6 MTH808 34 cobalamin biosynthesis protein D #7 MTH809 138 molybdenum cofactor biosynthesis protein MoaC #8 MTH831 25 molybdenum cofactor biosynthesis MoaA homolog #9 MTH1550 40 molybdenum cofactor biosynthesis MoaA #10 MTH1551 139 molybdopterin-guanine dinucleotide biosynthesis protein B related #11 MTH1786 82 unknown #12 MTH1862 300 conserved protein #13 MTH1864 109 phosphoribosylformylglycinamidine synthase II related protein #14 MTH1865 37 conserved protein Motif 1 ATATACCCCTCATCAATGTATTCATCATCA 0 15 1 TATGCAGCCCCAGCCATGAAAAAATTTAGG 1 82 1 TTCTACTATCCACCAATATAATGTGTGTAG 1 269 1 GACTTGTGCTCATCCATGAATCTCCTCTTA 2 208 0 AAGTCAAGGACGTCCATGAAGGAGATAGTC 2 233 1 AAAGTGTATTCATCAATTAAATAGTATCTA 4 92 1 TTATATCAGACATCCATGTACCATCCTAAA 4 175 0 AATCCATCAAAGAAATTCATGAGT 7 4 1 TCATTATCATCACTCATGAATTTCTTTGAT 7 15 0 TGAAAGAATTCACCCATGTATTTTAGAATC 7 42 1 TTTTAGAATCCATCAAAGAAATTCATGAGT 7 62 1 TCATTATCATCACTCATGAATTTCTTTGAT 7 73 0 TGAAAGAATTCACCCATGTATTTTAGAATC 7 100 1 TTTTAGAATCCATCAAAGAAATTCATGA 7 120 1 ********** MAP Score: 24.7081 Motif 2 TGTGCTCATCCATGAATCTCCTCTTAACTA 2 204 0 CTATCTCCTTCATGGACGTCCTTGACTTGT 2 231 0 TAGGATGGTACATGGATGTCTGATATAACA 4 177 1 TATCATCACTCATGAATTTCTTTGATGGAT 7 11 0 AGAATTCACCCATGTATTTTAGAATCCATC 7 46 1 TATCATCACTCATGAATTTCTTTGATGGAT 7 69 0 AGAATTCACCCATGTATTTTAGAATCCATC 7 104 1 TCATGAATTTCTTTGATGGAT 7 127 0 TCCACATGAAGCTCAGTCAAGCAG 9 4 1 GGGGGGATCTCAGGGATCTTACAGATACAT 11 15 1 ATCCTTGAAGCAGGGTTTTCAGCAACCCTC 11 49 0 GTGTTAAAAACATGTTTTTTGGATTTAAAT 12 78 0 CACATTTTTGCAGGAATCTTTCCTGGGGCA 12 196 1 ********** MAP Score: 15.4443 Motif 3 ACTTGAAGAGGAGGGTAGGGTTTCACTGTT 1 16 0 TTGCAAACAACAGGATGGGGGCCTGGTCTG 1 208 1 ATGTGTGTAGGGGGTTAAGGG 1 289 1 GAGAACCCTTGAGGTTGAGGGTAAAACCCC 2 38 1 CTGTCACCCAGGTGGTAGGGAGGGGTTTTA 2 59 0 ACCTGGGTGACAGGATAGAGGAGTGCCCCT 2 76 1 TTGTTGAGGAGATAATAGAGGTCTAGACAT 2 121 1 GAGGTCTAGACATGAAAATGGAGGAGTTTT 2 138 1 CAAGGACGTCCATGAAGGAGATAGTCTGTG 2 237 1 CATGACTGGAGGTAAAAAGGTCTGATACC 4 221 1 TGAAGGTGGAAAAGGATAAGTATT 5 4 1 TATCTAAAAAGGGGAAGAAGATAATTATAT 5 34 1 ATTCATGAGTGATGATAATGAAAGAATTCA 7 24 1 ATTCATGAGTGATGATAATGAAAGAATTCA 7 82 1 ATTTAGAATAGATGGAAGGGAACTTGAGGC 10 20 0 CTGAAGATAACATGAAGGGGACTGTTAAAT 10 48 0 AAAGTTTCACCATAAAAAGGACACTGAAGA 10 71 0 ATCTGTGCATCATGATAAAGTTTCACCATA 10 87 0 TAGAGAGTGAGGTGAAGAGG 10 129 1 ACCGGGCTGACATGAAAAAGTATTACCACA 12 121 0 ACCCTGAGATGATGAAGAGGAAAAATGCAA 12 236 0 ********** MAP Score: 15.3709 Motif 4 GCAGGATCACCATTAACGTTGATGATGAATACATTGATGA 0 24 0 CCCTCCTCTTCAAGTAGGGTCTGGAATGATCAAGAAATGA 1 31 1 GAGGTCTAGACATGAAAATGGAGGAGTTTTTAAGTAAGTG 2 138 1 CTATCTCCTTCATGGACGTCCTTGACTTGTGCTCATCCAT 2 221 0 ATCAGACATCCATGTACCATCCTAAATTTTTAACCATTTT 4 161 0 TATCATCACTCATGAATTTCTTTGATGGATT 7 1 0 TATCATCACTCATGAATTTCTTTGATGGATTCTAAAATAC 7 59 0 TCATGAATTTCTTTGATGGATTCTAAAATAC 7 117 0 GAAGCTCAGTCAAGCAGGTGACTGAAACATTAT 9 17 1 CTGAAGATAACATGAAGGGGACTGTTAAATTTAGAATAGA 10 38 0 AACCCTGCTTCAAGGATACTTCTAAAGCAT 11 62 1 TCTCAGGGTACATTTATTAGGGTGATCCCTCAAAGCTGAA 12 257 1 **** * * *** * MAP Score: 13.7854 Motif 5 GATGATGAATACATTGATGAGGGGTATATGATT 0 11 0 ATCACCATTAACGTTGATGATGAATACATTGAT 0 26 0 GGCGGTAAGTATGTTGTTGAGGAGATAATAGAG 2 108 1 CAAGTCAAGGACGTCCATGAAGGAGATAGTCTG 2 232 1 AAATGGTTAAAAATTTAGGATGGTACATGGATG 4 162 1 TTCTTAACCTCCGTGAGAGTAATATAATT 5 56 0 TCACTCATGAATTTCTTTGATGGATT 7 3 0 TCACTCATGAATTTCTTTGATGGATTCTAAAAT 7 61 0 TCATGAATTTCTTTGATGGATTCTAAAAT 7 119 0 TCTTACAGATACATTCCGGAGGGTTGCTGAAAA 11 31 1 AGCTCTGAAGACTTTAAGGATGGAAACAGACAT 12 162 1 ACAGACATCCACATTTTTGCAGGAATCTTTCCT 12 187 1 ATCTCAGGGTACATTTATTAGGGTGATCCCTCA 12 256 1 ** ** ****** MAP Score: 13.3823 Motif 6 AATCATATACCCCTCATCAATGTATTCATCATCA 0 11 1 TCATTCCAGACCCTACTTGAAGAGGAGGGTAGGG 1 26 0 CCTATGAGGGCCCTAAACCCTGTGGCGTAGAAGA 1 118 0 GGGTTTAGGGCCCTCATAGGTCAGACAGAATTTT 1 132 1 CCCTTAACCCCCTACACACATTATATTGGTGGA 1 277 0 GTTCTCTTTGCCCTGCAGAGGTCACAGTATGCAG 2 10 0 TAAAACCCCTCCCTACCACCTGGGTGACAGGATA 2 59 1 AGAGGAGTGCCCCTGCGGCGGTAAGTATGTTGTT 2 92 1 ACTACCTTGTCCCTGCAGCCACAGACAGGACACT 2 174 0 TATGATCGTTCACTGAATAGATTATTAGGCTGCA 4 20 1 GGCTGCAAAGCACTCCAGAGAGCACCTCAAGCTC 4 47 1 AGCTCTCAAACACTGCAAAGTGTATTCATCAATT 4 76 1 TTTTCAGCAACCCTCCGGAATGTATCTGTAAGAT 11 30 0 TTGCTGAAAACCCTGCTTCAAGGATACTTCTAAA 11 54 1 CAATCAGCTGCACTGCCCCAGGAAAGATTCCTGC 12 205 0 AATAAATGTACCCTGAGATGATGAAGAGGAAAAA 12 241 0 TGAGGGATCACCCTAATAAATGTACCCTGAGATG 12 255 0 TTAGGGTGATCCCTCAAAGCTGAAGACAGAGACC 12 273 1 ****** *** * MAP Score: 13.1715 Motif 7 ATCATATACCCCTCATCAATGTATTCATCAT 0 12 1 TGCCAGCGGACCACCTCAGAGCAGGATCACC 0 53 0 ACCCTACCCTCCTCTTCAAGTAGGGTCTGGA 1 25 1 CATACTGTGACCTCTGCAGGGCAAAGAGAAC 2 13 1 GTTTTACCCTCAACCTCAAGGGTTCTCTTTG 2 34 0 AACATACTTACCGCCGCAGGGGCACTCCTCT 2 92 0 CACAGACTATCTCCTTCATGGACGTCCTTGA 2 236 0 ATAGATTATTAGGCTGCAAAGCACTCCAGAG 4 36 1 AAGCTCTCAAACACTGCAAAGTGTATTCATC 4 75 1 AATCCATCAAAGAAATTCATGA 7 1 1 GTATTTTAGAATCCATCAAAGAAATTCATGA 7 59 1 GTATTTTAGAATCCATCAAAGAAATTCATGA 7 117 1 TCCAGGTTCAGCCTCAAGTTCCCTTCCAT 10 8 1 ATTTAACAGTCCCCTTCATGTTATCTTCAGT 10 48 1 GCTGAAAACCCTGCTTCAAGGATACTTCTAA 11 56 1 GAGCCATAATCCAGTTCAAAGGTTTTAAAAC 12 46 1 CCATCCTTAAAGTCTTCAGAGCTGCTGAATG 12 154 0 TATTAGGGTGATCCCTCAAAGCTGAAGACAG 12 271 1 TCCAAGTCCTCCACTTCAATTGTG 13 3 0 ** ******** MAP Score: 12.8445 Motif 8 GGTCAGACAGAATTTTTTTAGTAATCTTAGAGCCCCGGA 1 150 1 CTAGAAGCACCATAGTTCTAATAGTTTTACTGACATAAT 3 35 1 AAAGTGTATTCATCAATTAAATAGTATCTAAGTGCAATA 4 92 1 GTACCATCCTAAATTTTTAACCATTTTTATTAATAGAAT 4 149 0 TACCTCCAGTCATGTTTTCAGGAGTTTTTGTTATATCAG 4 196 0 AGGGGAAGAAGATAATTATATTACTCTCACGGAGGTTAA 5 43 1 AATCCATCAAAGAAATTCATGAGTGATGA 7 0 1 TACATGGGTGAATTCTTTCATTATCATCACTCATGAATT 7 23 0 TGTATTTTAGAATCCATCAAAGAAATTCATGAGTGATGA 7 58 1 TACATGGGTGAATTCTTTCATTATCATCACTCATGAATT 7 81 0 TGTATTTTAGAATCCATCAAAGAAATTCATGA 7 116 1 GCTTTAGAAGTATCCTTGAAGCAGGGTTTTCAGCAACCC 11 51 0 TTTGGATTTAAATGGTTTTAAAACCTTTGAACTGGATTA 12 52 0 ATCCAAAAAACATGTTTTTAACACTTTTATTAGATTCTG 12 84 1 CAGACATCCACATTTTTGCAGGAATCTTTCCTGGGGCAG 12 188 1 GAGGACTTGGAAACTTTTAAAAAGGATCTGCTACAGATT 13 23 1 *** ** * * *** MAP Score: 10.679 Motif 9 GTGAAACCCTACCCTCCTCTTCAAGTAGGGTCT 1 20 1 GAAGCAGCATCTCCACAAGACCTGATTTTATAT 1 237 1 GAGGGGTTTTACCCTCAACCTCAAGGGTTCTCT 2 37 0 GAGGGTAAAACCCCTCCCTACCACCTGGGTGAC 2 54 1 CCTCTATTATCTCCTCAACAACATACTTACCGC 2 109 0 AAAACCACCTAATCTGCGGTCTCAA 2 285 0 TCGCCACCGGCTCCATGAATATAT 3 1 1 AGTGCTTTGCAGCCTAATAATCTATTCAGTGAA 4 28 0 CTCCAGAGAGCACCTCAAGCTCTCAAACACTGC 4 59 1 TCCAGGTTCAGCCTCAAGTTCCCTTCCATCTA 10 9 1 CCTCTTCACCTCACTCTCTACTCATAACC 10 120 0 GAAAAAGTATTACCACAGAATCTAATAAAAGTG 12 105 0 TGCATTTTTCCTCTTCATCATCTCAGGGTACAT 12 237 1 CCAAATCAATCTCCACATAATCTT 14 1 0 * ***** **** MAP Score: 9.47312 Motif 10 TCATCAATGTATTCATCATCAACGTTAATGGTGATCCT 0 24 1 ATATCATGGTATGCAGCCCCAGCCATGAAAAAATTTAG 1 73 1 TCTGTGAGAAATGCGGCCACATCTTTGAGACCGCAGAT 2 261 1 AATCCATCAAAGAAATTCATGAGTGATGA 7 1 1 TAATGAAAGAATTCACCCATGTATTTTAGAATCCATCA 7 39 1 GTATTTTAGAATCCATCAAAGAAATTCATGAGTGATGA 7 59 1 TAATGAAAGAATTCACCCATGTATTTTAGAATCCATCA 7 97 1 GTATTTTAGAATCCATCAAAGAAATTCATGA 7 117 1 TCTATTCTAAATTTAACAGTCCCCTTCATGTTATCTTC 10 38 1 ** ** ** * ** * MAP Score: 8.84917 Motif 11 ATATACCCCTCATCAATGTATTCATCATCAA 0 15 1 ATGTATTCATCATCAACGTTAATGGTGATCC 0 30 1 CCAAAATTGACCGCCACATATATACCATACG 0 102 1 AAGAATAGGCCCTAAATTTTTTCATGGCTGG 1 91 0 TTCTACTATCCACCAATATAATGTGTGTAGG 1 269 1 GGGGTTTTACCCTCAACCTCAAGGGTTCTCT 2 37 0 CTTAAAAACTCCTCCATTTTCATGTCTAGAC 2 141 0 TGTGCTCATCCATGAATCTCCTCTTAACTAC 2 203 0 GTGAGAAATGCGGCCACATCTTTGAGACCGC 2 264 1 CCACCGGCTCCATGAATATATACTAGAAGCA 3 13 1 CGCATAAAGTTATTATGTCAGTA 3 62 0 CCAGAGAGCACCTCAAGCTCTCAAACACTGC 4 61 1 CATGTACCATCCTAAATTTTTAACCATTTTT 4 160 0 TTATATCAGACATCCATGTACCATCCTAAAT 4 174 0 TATCATCACTCATGAATTTCTTTGATGGATT 7 10 0 TATCATCACTCATGAATTTCTTTGATGGATT 7 68 0 TGAAAGAATTCACCCATGTATTTTAGAATCC 7 100 1 TCATGAATTTCTTTGATGGATT 7 126 0 TCCACATGAAGCTCAGTCAAGCAGG 9 4 1 CCAGGTTCAGCCTCAAGTTCCCTTCCATCTA 10 11 1 CTCAAGTTCCCTTCCATCTATTCTAAATTTA 10 22 1 CCTCTTCACCTCACTCTCTACTCATAACC 10 120 0 CAGCAACCCTCCGGAATGTATCTGTAAGATC 11 29 0 TGGAAACAGACATCCACATTTTTGCAGGAAT 12 182 1 GTTTCCAAGTCCTCCACTTCAATTGTG 13 6 0 ******* *** MAP Score: 5.72302 Motif 12 GCAAACAACAGGATGGGGGCCTGGTCTGAAGCA 1 210 1 CCTCCCTACCACCTGGGTGACAGGATAGAGGAG 2 66 1 CTAGACATGAAAATGGAGGAGTTTTTAAGTAAG 2 143 1 TTAGGATGGTACATGGATGTCTGATATAACAAA 4 176 1 ATTCTAAAATACATGGGTGAATTCTTTCATTAT 7 38 0 ATTCTAAAATACATGGGTGAATTCTTTCATTAT 7 96 0 TTAAATCAGCATCTGGGAGCCATAATCCAGTTC 12 30 1 TCCTGCAAAAATGTGGATGTCTGTTTCCATCCT 12 178 0 CACAATTGAAGTGGAGGACTTGGAAACTTTT 13 8 1 * ****** *** MAP Score: 5.13039