AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_operons026_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944245203
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH281	259	conserved protein
#1	MTH282	107	unknown
#2	MTH700	110	conserved protein
#3	MTH702	27	acetyl-CoA synthetase related protein
#4	MTH708	135	thioredoxin reductase
#5	MTH1278	159	conserved protein
#6	MTH1280	66	PET112-like protein
#7	MTH1354	124	NADH oxidase
#8	MTH1496	194	amidase
#9	MTH1648	110	dihydrolipoamide dehydrogenase

Motif 1
ATCATTTTATAAATAAAGTTAAAAACAATT	1	31	0
TTTATTTATAAAATGATGATTAGTTAACTT	1	44	1
TTCATTCATCTAATAAAGTTAACTAATCAT	1	59	0
TCTCTTCCCTTAATAAAGTTTCTCATCTTA	2	36	0
TAATAATGATTATTAATGATAAATGTCTCT	2	61	0
CAGGAAAAATTAATAATGATTATTAATGAT	2	71	0
TCACCGGTGGAGATAAAGATTTCACATTCA	4	93	0
CCGGTGACCAAGATAATGATTAAGGTGGT 	4	116	1
GCAGAATACTTTATAAAGTTTCATGGAGAT	5	15	0
        GTAAATGATGATAATAATATAC	6	2	1
GATGTTCAATATTTAAAGATTGGTAGATTG	8	17	0
ACTAATGTTTAGATAAAGATCCGTCACATA	9	52	1
GATCCGTCACATATAAAGATTTGTGGGAAA	9	69	1
          **********
MAP Score: 15.5266

Motif 2
GAGTGTATCAGAAACAGCTGATAGGACACCCGTGTAGGG	0	23	0
GGATTGGCTAGCATCTGCAGATGTAACGCCCTCCTTCCT	0	63	1
GTAATATGAAGCTTCTGCAGAGATCACCGCACCATCAGC	0	145	0
TGAGATCCCTGTTTCTGGTGAAGGCACTCCCTGCGTGAC	0	197	1
TGGAGCTTTAGGGTCTGCTGAGCACCCTCAATAATAAAA	4	27	0
AGTATTCTGCACTACTGCAGATGTAACCCTGCAGCTACA	5	35	1
ATGTAACCCTGCAGCTACAGAAACATCACTCAAGATTGT	5	55	1
TTGTAACCCTGTAGCTACAGAAACATCAGTCAAGATAAA	5	90	1
          *   *******     * *
MAP Score: 14.8802

Motif 3
TTCAGGATCCCTACACGGGTGTCCTATCAGCTG	0	15	1
TGGCTAGCATCTGCAGATGTAACGCCCTCCTTC	0	67	1
GCGGTGATCTCTGCAGAAGCTTCATATTACTTT	0	154	1
CAGGGAGTGCCTTCACCAGAAACAGGGATCTCA	0	197	0
   GATTACACCTCATCAGCGTCAGGAAAAATT	2	90	0
     TACTACCACACAGGGGACACCGCCTGG 	3	5	1
AAATCTTTATCTCCACCGGTGACCAAGATAATG	4	101	1
TTCTGCACTACTGCAGATGTAACCCTGCAGCTA	5	39	1
AACCCTGCAGCTACAGAAACATCACTCAAGATT	5	59	1
AACCCTGTAGCTACAGAAACATCAGTCAAGATA	5	94	1
AACTTACGGACTTCACATTTATCACGGAATTCA	5	135	1
          ** **** * ***
MAP Score: 12.5145

Motif 4
TTATTTATAAAATGATGATTAGTTAACTTTA	1	45	1
AGGAAAAATTAATAATGATTATTAATGATAA	2	69	0
       GTAAATGATGATAATAATATACTC	6	3	1
GTCAGAATACACTAATGTTTAGATAAAGATC	9	42	1
 CTTTTACAGTGTGATGATTAGATTAAATTT	1	87	0
CGGTGACCAAGATAATGATTAAGGTGGT   	4	117	1
TACAATCTTGAGTGATGTTTCTGTAGCTGCA	5	64	0
ATTTATCTTGACTGATGTTTCTGTAGCTACA	5	99	0
AGGGATCTCAAAGGATGCTTAAAGTAATATG	0	176	0
AATTAAAACCACGGATGAGTACTGTCATGGC	8	72	1
ACACAGATCTATTGATGTATCCAAATTTATA	7	34	1
          * *********
MAP Score: 7.83013

Motif 5
GATAGGACACCCGTGTAGGGATCCTGAATCTC	0	11	0
AGGGCGTTACATCTGCAGATGCTAGCCAATCC	0	63	0
GTCTCAAAGTCCCTGCGGTAATAAGCTGATGG	0	121	1
GTGCGGTGATCTCTGCAGAAGCTTCATATTAC	0	152	1
TGAAGGCACTCCCTGCGTGACAAGGTTTATAT	0	215	1
GGTTTATATACTGTGTGGTACAAGGTACTGT 	0	238	1
GCGGTGTCCCCTGTGTGGTAGTA         	3	1	0
ATTGAGGGTGCTCAGCAGACCCTAAAGCTCCA	4	34	1
TATCTTGGTCACCGGTGGAGATAAAGATTTCA	4	99	0
GCAGGGTTACATCTGCAGTAGTGCAGAATACT	5	35	0
GCAGATGTAACCCTGCAGCTACAGAAACATCA	5	51	1
AAGATTGTAACCCTGTAGCTACAGAAACATCA	5	86	1
TAATAATATACTCTGAAGTTCACCGGATCATA	6	21	1
ATCAATAGATCTGTGTGGTAGTTATAAGGGAG	7	18	0
TCATGGCTGTCCCGGCGGTCCATGGACCGGAA	8	96	1
          ********  **
MAP Score: 7.65896

Motif 6
CAGTACCTTGTACCACACAGTATATAAACC	0	238	0
TTAATCTAATCATCACACTGTAAAAG    	1	91	1
       TACTACCACACAGGGGACACCGC	3	3	1
CCCTTATAACTACCACACAGATCTATTGAT	7	20	1
AAATATTGAACATCTCACATTTATTAGTGT	8	33	1
ATCAGACTTATATCTCACTTCAACTTGAAA	8	167	1
          **********
MAP Score: 6.06609

Motif 7
GGATTGGCTAGCATCTGCAGATGTAACGCCCT	0	63	1
CTGGCCATCTGATTCTTTAGGGTCTCAAAGTC	0	100	1
GTAATATGAAGCTTCTGCAGAGATCACCGCAC	0	152	0
AATTTTTCCTGACGCTGATGAGGTGTAATC  	2	90	1
TGGAGCTTTAGGGTCTGCTGAGCACCCTCAAT	4	34	0
TGATGTTTCTGTAGCTGCAGGGTTACATCTGC	5	51	0
TGATGTTTCTGTAGCTACAGGGTTACAATCTT	5	86	0
          *  *********
MAP Score: 5.76114

Motif 8
CTTTATTTATAAAATGATGATTAGTTAACT	1	43	1
TTTCTCATCTTAAATGTTTAAGTTCCACAT	2	18	0
ATAATGATTATTAATGATAAATGTCTCTTC	2	59	0
GGAAAAATTAATAATGATTATTAATGATAA	2	69	0
GGTGACCAAGATAATGATTAAGGTGGT   	4	118	1
         GTAAATGATGATAATAATATA	6	1	1
         CTTAATGGTTATTCCTCCCTT	6	55	0
AATTATTTATAAAATGAAGAAGAGACCTAT	7	75	1
ATGGCAGCTATTAAGGTTGATCAGACTTAT	8	148	1
TCAGAATACACTAATGTTTAGATAAAGATC	9	43	1
          **********
MAP Score: 3.86145

Motif 9
CCGTGTAGGGATCCTGAATCTCA        	0	2	0
GGACTTTGAGACCCTAAAGAATCAGATGGCC	0	102	0
GGTCTCAAAGTCCCTGCGGTAATAAGCTGAT	0	120	1
GGTGCGGTGATCTCTGCAGAAGCTTCATATT	0	151	1
GTGAAGGCACTCCCTGCGTGACAAGGTTTAT	0	214	1
TCTGCTGAGCACCCTCAATAATAAAAAAAGG	4	22	0
TGCTCAGCAGACCCTAAAGCTCCACCTCCTT	4	42	1
TGCAGATGTAACCCTGCAGCTACAGAAACAT	5	50	1
TACAGAAACATCACTCAAGATTGTAACCCTG	5	70	1
CAAGATTGTAACCCTGTAGCTACAGAAACAT	5	85	1
ATAATAATATACTCTGAAGTTCACCGGATCA	6	20	1
AAGTCAGAATACACTAATGTTTAGATAAAGA	9	40	1
          ********* *
MAP Score: 2.94495

Motif 10
GTGTAGGGATCCTGAATCTCA         	0	1	0
TGTCCTATCAGCTGTTTCTGATACACTCTG	0	34	1
CGTTACATCTGCAGATGCTAGCCAATCCAG	0	61	0
GCGGTAATAAGCTGATGGTGCGGTGATCTC	0	135	1
CTTTGAGATCCCTGTTTCTGGTGAAGGCAC	0	194	1
ATTAATTTTTCCTGACGCTGATGAGGTGTA	2	87	1
GAGTGATGTTTCTGTAGCTGCAGGGTTACA	5	56	0
AGATTGTAACCCTGTAGCTACAGAAACATC	5	87	1
TATCTTGACTGATGTTTCTGTAGCTACAGG	5	97	0
TACTGTCATGGCTGTCCCGGCGGTCCATGG	8	91	1
          **********
MAP Score: 1.06584