AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_operons027_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944245226
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH170	141	phosphoribosylaminoimidazolesuccinocarboxamide synthase
#1	MTH600	300	conserved protein
#2	MTH602	90	precorrin-3 methylase
#3	MTH1014	127	conserved protein
#4	MTH1348	139	precorrin-2 methyltransferase
#5	MTH1403	78	precorrin-3 methylase
#6	MTH1404	82	unknown
#7	MTH1514	125	precorrin-6Y methylase

Motif 1
ATCAGATTCATGCTTCTTAGGGTGAAATA     	0	5	0
TGATTTCGCAAGATTATATAACTGAATCGCAATA	0	35	1
AACTCTCCAATACTTATATAGGTGTAAATTCTAT	0	78	0
CTGGAAATTCCGCTGATGAAAGAGAAAACCTCAC	1	108	1
CCCGGAAAAAAGATAATCAGGGGATGATAATCTG	2	21	1
AATCAGGGGATGATAATCTGAGTGGAAAGGAAAC	2	35	1
AGGAAACTCGAGATAATAAAACAGGAAGTGTCAT	2	62	1
 ATAGACCCCTCTTAATCAGGGGAACCACAATTT	3	9	1
ACAATTTATTTATTTATTAAACTGTAATTAAAGC	3	36	1
TAGTAAATATAGTTAATAAAGGAGGACTTTGT  	3	105	1
        GGACCTATTTAAGGGGGTGGAACTAT	4	2	1
AGAAAAATAATGATAATAAAGGCGGGTCTGGATA	4	56	1
ATGTCTACAGAGTTATTAAAGGTGTTCTA     	4	120	1
AGAAGGACACTGATCATGAAGCTGTCGCAAATGA	5	15	0
ATGATCAGTGTCCTTCTTAGAGGGATTTAATCAA	5	32	1
          ** * ** **** *
MAP Score: 9.93745

Motif 2
   CAAGGATAAGGTGAAATTGAGATACCCGT	1	7	1
GTTGCGGCGGATGCAGAGGATAGAATACTATC	1	40	1
CACCATATGCTTGCAGGGACTGACTGGAAATT	1	85	1
CCCCAATACGATGGTGGAAATGGAACTGCTCA	1	163	1
AGAAGACATGAAGGAGAATATGAATACCGGAT	1	197	1
GATAGGTTGAAAGGTGGGCATAAAGACATCAG	1	248	1
GAAAAAAGATAATCAGGGGATGATAATCTGAG	2	25	1
CGAGATAATAAAACAGGAAGTGTCATATTC  	2	70	1
ATAGTTAATAAAGGAGGACTTTGT        	3	113	1
AATGATAATAAAGGCGGGTCTGGATATTTCCA	4	64	1
ACTCTCTTTAATGGAGAGATTGCTGAGACCCA	7	57	1
          ********  **
MAP Score: 6.70758

Motif 3
  TATTTCACCCTAAGAAGCATGAATCTGATTTC	0	8	1
GTTATATAATCTTGCGAAATCAGATTCATGCTTC	0	23	0
CATATGGTGTATCCCGAAGCAGGATAGTATTCTA	1	60	0
ACTGGAAATTCCGCTGATGAAAGAGAAAACCTCA	1	107	1
CGGATTCCATTCACTGAAGACCGAGATAGGTTGA	1	224	1
AAATGATGGGCCCCGGAAAAAAGATAATCAGGGG	2	10	1
ATAGTTCCACCCCCTTAAATAGGTCC        	4	2	0
TTAGAGAGTGCCACAGAAAAATAATGATAATAAA	4	42	1
CTGGATATTTCCAGAGAAGGATGACCAGACCATC	4	83	1
TTGATTAAATCCCTCTAAGAAGGACACTGATCAT	5	32	0
          ** * **** * **
MAP Score: 4.56252

Motif 4
GGAAACTCGAGATAATAAAACAGGAAGTGT	2	63	1
TTAATTACAGTTTAATAAATAAATAAATTG	3	37	0
TTATTAAACTGTAATTAAAGCCATTAAAGT	3	49	1
AGTAAATATAGTTAATAAAGGAGGACTTTG	3	106	1
GAAAAATAATGATAATAAAGGCGGGTCTGG	4	57	1
TGTCTACAGAGTTATTAAAGGTGTTCTA  	4	121	1
CTTAGAGGGATTTAATCAAGTCTTAGGCGG	5	47	1
GCCGGGATATTATAATAAAATGTTGGTATG	7	23	1
          **********
MAP Score: 4.35348

Motif 5
TGACTGAATCCCCAATACGATGGTGGAAATGGA	1	154	1
TGTGGTTCCCCTGATTAAGAGGGGTCTAT    	3	6	0
GTAAATATAGTTAATAAAGGAGGACTTTGT   	3	107	1
      GGACCTATTTAAGGGGGTGGAACTATA	4	4	1
AAAAATAATGATAATAAAGGCGGGTCTGGATAT	4	58	1
CTGGATATTTCCAGAGAAGGATGACCAGACCAT	4	83	1
TTGATTAAATCCCTCTAAGAAGGACACTGATCA	5	33	0
TCCTTCACTGCCCTGTAAGGTGGTTTTTAACAT	6	15	1
AGCAATCTCTCCATTAAAGAGAGTGTCCCATAC	7	48	0
ATTCCATCAAATCAGCACGGAGGCAGATATTCA	7	90	0
          ****  **** **
MAP Score: 3.64487

Motif 6
TAAAGAATTTGAGTATGAAATCCTGATCAACTCTCCAATAC	0	99	0
TGCAGGGACTGACTGGAAATTCCGCTGATGAAAGAGAAAAC	1	96	1
TTCCGCTGATGAAAGAGAAAACCTCACAGGAATCCCTGCTG	1	115	1
TACGATGGTGGAAATGGAACTGCTCAAAAGAAGACATGAAG	1	169	1
ACATGAAGGAGAATATGAATACCGGATTCCATTCACTGAAG	1	202	1
TTTCCACTCAGATTATCATCCCCTGATTATCTTTTTTCCGG	2	22	0
AATCTGAGTGGAAAGGAAACTCGAGATAATAAAACAGGAAG	2	49	1
GAAAAATAATGATAATAAAGGCGGGTCTGGATATTTCCAGA	4	57	1
GATATTTCCAGAGAAGGATGACCAGACCATCATCATGTCTA	4	86	1
          ** *   **  ** **    *
MAP Score: 3.38886

Motif 7
TATATAAGTATTGGAGAGTTGATCAGGATTTCATACTCAA	0	92	1
CACCATATGCTTGCAGGGACTGACTGGAAATTCCGCTGAT	1	85	1
   GGACCTATTTAAGGGGGTGGAACTATATAAGTTTAGA	4	7	1
CTATATAAGTTTAGAGAGTGCCACAGAAAAATAATGATAA	4	32	1
AGTGTCCTTCTTAGAGGGATTTAATCAAGTCTTAGGCGGT	5	38	1
AAAAACCACCTTACAGGGCAGTGAAGGATTAAA       	6	3	0
AATGGAGAGATTGCTGAGACCCAGTGAATATCTGCCTCCG	7	66	1
TCCGTGCTGATTTGATGGAATAGGGGTAATTTT       	7	102	1
          ** *****       * * *
MAP Score: 2.25209

Motif 8
ACACCATATGCTTGCAGGGACTGACTGGAAATT	1	84	1
TCGAGATAATAAAACAGGAAGTGTCATATTC  	2	69	1
    GGACCTATTTAAGGGGGTGGAACTATATA	4	6	1
GAACTATATAAGTTTAGAGAGTGCCACAGAAAA	4	29	1
TTTAACATCTAATTCAGAAAGTTTTAAAATGTG	6	40	1
CAATCTCTCCATTAAAGAGAGTGTCCCATACCA	7	46	0
CACTCTCTTTAATGGAGAGATTGCTGAGACCCA	7	56	1
          * *  ********
MAP Score: 1.39523

Motif 9
CAGATTCATGCTTCTTAGGGTGAAATA      	0	4	0
CCCTGATTATCTTTTTTCCGGGGCCCATCATTT	2	10	0
TGTGGTTCCCCTGATTAAGAGGGGTCTAT    	3	6	0
      GGACCTATTTAAGGGGGTGGAACTATA	4	4	1
GATCAGTGTCCTTCTTAGAGGGATTTAATCAAG	5	34	1
TGTTAAAAACCACCTTACAGGGCAGTGAAGGAT	6	14	0
ATGGGACACTCTCTTTAATGGAGAGATTGCTGA	7	50	1
          **  **** ****
MAP Score: 0.841479

Motif 10
AAGAATTTGAGTATGAAATCCTGATCAACTCTCC	0	104	0
GATTCAGTCAGCAGGGATTCCTGTGAGGTTTTCT	1	130	0
GGAACTGCTCAAAAGAAGACATGAAGGAGAATAT	1	184	1
ATGAAGGAGAATATGAATACCGGATTCCATTCAC	1	204	1
GATAATCAGGGGATGATAATCTGAGTGGAAAGGA	2	32	1
AATCTGAGTGGAAAGGAAACTCGAGATAATAAAA	2	49	1
TATTTCCAGAGAAGGATGACCAGACCATCATCAT	4	88	1
          * * *** *** **
MAP Score: 0.423162