AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_operons028_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944245298 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH531 291 UDP-N-acetylmuramyl tripeptide synthetase related protein #1 MTH532 28 UDP-N-acetylmuramyl tripeptide synthetase related protein #2 MTH533 41 unknown #3 MTH735 88 phospho-N-acetylmuramoyl-pentapeptide-transferase #4 MTH736 133 conserved protein #5 MTH738 24 conserved protein #6 MTH739 286 conserved protein #7 MTH1675 151 conserved protein #8 MTH1676 235 cell division protein FtsZ #9 MTH1677 120 protein translocation complex sec61 gamma subunit related protein #10 MTH1678 26 transcription termination factor NusG #11 MTH1691 113 conserved protein #12 MTH1885 300 sodium-dependent phosphate transporter Motif 1 ATAGGTAGAGTGTCTATGGGTGGATACATATC 0 101 1 TACCTATGGATCATTCGGTGGGATATCTACCA 0 166 0 ACTACCTCGGTCAGGACGGGTGCCATCAGGTG 0 203 1 GGGTAACTGTGGGGGCCAATGATCC 3 3 1 ATTAGAAGTATGACTTTGAGGGATTTCA 6 6 0 TCATAACATGTCATGATGGGGGGTCCCGCCCA 8 15 1 ATGAATATCATGAATCTGGGCGGGACCCCCCA 8 31 0 AAATACCGGCTCAAGGTTGGGGCAAAATAAAA 8 84 0 AAATTAAAAATCAATTTCTGTGACCTCTGAAA 8 114 0 ATTTCATAGATAAGTGTGGGGGTAGTAA 8 217 1 AGGTTTTCCTTGAGTGGGGGTGTGTGGAAGAA 9 12 0 TTTAACTATATAAATAGCGGGGATAAACC 9 101 1 AGATATATATGATTAGGTGTGCCGGTTTTCG 11 92 0 CCATCGGCCCTGATGGTCGGTGTCGAAGCCTC 12 68 0 ATGGCGCGGTTGAAGTTCGGGGGACGGCTGAT 12 107 0 *** * ****** MAP Score: 17.8067 Motif 2 ATGCTTTGTTATCCTGAGGGCATTGTTATG 6 60 1 ATCACCACTGATCCTGCGGGACGAGGCTTC 12 46 1 AAATGGGCTAGACCGGAGGGTTAGGGGTCC 12 161 0 CATCTGGATGGGTTAAGGTCT 10 1 1 ATGGGGCCCTGACTGGAGGGTCAGGGTAAA 12 18 0 ACCTTTATAAATCTTGAAGGATAGATTACT 9 40 1 TCACAGATTAATCAGGAAGGAACGCGTGTT 0 243 1 CACTACCTCGGTCAGGACGGGTGCCATCAG 0 202 1 CTGTCCATCGGCCCTGATGGTCGGTGTCGA 12 74 0 TGCAATGATCACCCTGCCGGTTTTCGTGGT 11 37 0 TCAGCCCTGTATTTTGAGGGTATTGAGAAT 4 29 1 AATATCATGAATCTGGGCGGGACCCCCCAT 8 30 0 AAAGATCCTCACCCGGGAGGATATGTATCC 0 122 0 TTCATAACATGTCATGATGGGGGGTCCCGC 8 14 1 TAGAAGTATGACTTTGAGGGATTTCA 6 6 0 CCTATGGATCATTCGGTGGGATATCTACCA 0 166 0 TTGTTATGCAATTATGCCGGTGCCGACATC 6 82 1 GGTACTGAAGGCTTTGCTGGA 5 1 0 ********** MAP Score: 14.7549 Motif 3 ATCACCTCTAACACTCCAGGGAGTTCATGG 0 8 1 GGGTGGATACATATCCTCCCGGGTGAGGATCT 0 118 1 TGGGGGCCAATGATCCTGAACTGCTTGAACTG 3 19 1 AAAAACTTGGTGATCTTGATGTACACAGAAGG 3 58 1 TATAAAAACTTAATCTTGACCGGTTCAGGTAA 4 71 0 TTATGCTTTGTTATCCTGAGGGCATTGTTATG 6 58 1 ACTGTATCTTTTATCCTCGGGGACAGCCATGG 6 112 1 AAACCTTTTTTTAGCTTGCAGTATTGTCTGCA 6 202 0 CCCAGATTCATGATATTCATGGCCACGTGGAC 8 43 1 AAACCTTTATAAATCTTGAAGGATAGATTACT 9 38 1 TTTGCAATGATCACCCTGCCGGTTTTCGTGGT 11 37 0 TGGTTTACCCTGACCCTCCAGTCAGGGCCCCA 12 15 1 CCATCACCACTGATCCTGCGGGACGAGGCTTC 12 44 1 AGAGGACCCCTAACCCTCCGGTCTAGCCCATT 12 158 1 * ******* ** MAP Score: 13.3642 Motif 4 GAGCCAGATGCCTGACCCGGGATCTGATAG 0 46 1 ACCTAAAGATCCTCACCCGGGAGGATATGT 0 126 0 ATAGGTACACCCACTACCTCGGTCAGGACG 0 191 1 GGCCAATGATCCTGAACTGCTTGAACTGGT 3 23 1 ATGAATTTTACCTGAACCGGTCAAGATTAA 4 64 1 AAAGAGTAAACCAGTCCTTGATTTTTTTGA 4 113 1 AAAAATTTTTCCTATACCTGCCATAAATAT 7 83 1 TTTATTTTGCCCCAACCTTGAGCCGGTATT 8 85 1 ACTACAACCACGAAAACCGGCAGGGTGATC 11 31 1 CACCACACCACGAAAACCGGCACACCTAAT 11 82 1 GATGGTTTACCCTGACCCTCCAGTCAGGGC 12 13 1 TCAGCCGTCCCCCGAACTTCAACCGCGCCA 12 108 1 ACAGAGGACCCCTAACCCTCCGGTCTAGCC 12 156 1 ********** MAP Score: 11.5174 Motif 5 ATCACCTCTAACACTCCAGGGAGTTCATGGATTACTG 0 7 1 TCATGGATTACTGAGCCAGATGCCTGACCCGGGATCTGAT 0 34 1 TGGGTGGATACATATCCTCCCGGGTGAGGATCTTTAGGTA 0 117 1 GCCTCTGGTAGATATCCCACCGAATGATCCATAGGTACAC 0 161 1 AACATCACCTTCTGTTTGAGTCAGAAATAACG 7 2 1 CTACAACCACGAAAACCGGCAGGGTGATCATTGCAAACCT 11 32 1 ATGGTTTACCCTGACCCTCCAGTCAGGGCCCCATCACCAC 12 14 1 CCCATCACCACTGATCCTGCGGGACGAGGCTTCGACACCG 12 43 1 GACGAGGCTTCGACACCGACCATCAGGGCCGATGGACAGT 12 65 1 ACAGAGGACCCCTAACCCTCCGGTCTAGCCCATTTTACTG 12 156 1 * * ** * * * *** MAP Score: 10.2013 Motif 6 GCTCAGTAATCCATGAACTCCCTGGAGTGTTAGA 0 16 0 ATAGGTACACCCACTACCTCGGTCAGGACGGGTG 0 191 1 GGATCATTGGCCCCCACAGTTACCC 3 1 0 ATTCTCAATACCCTCAAAATACAGGGCTGATTGA 4 25 0 TTTTATTTTGCCCCAACCTTGAGCCGGTATTTTC 8 84 1 TTACTACCCCCACACTTATCTATGAAATAT 8 215 0 TATTCTTCCACACACCCCCACTCAAGGAAAA 9 7 1 TTTACATCAACCACTACAACCACGAAAACCGGCA 11 19 1 AACCACCACACCACGAAAACCGGCACACCTAATC 11 79 1 AGATGGTTTACCCTGACCCTCCAGTCAGGGCCCC 12 12 1 CCAGTCAGGGCCCCATCACCACTGATCCTGCGGG 12 32 1 GAGGCTTCGACACCGACCATCAGGGCCGATGGAC 12 68 1 ATCAGCCGTCCCCCGAACTTCAACCGCGCCATAT 12 107 1 TTACAGAGGACCCCTAACCCTCCGGTCTAGCCCA 12 154 1 **** *** * * * MAP Score: 9.94937 Motif 7 TAAAGATCCTCACCCGGGAGGATATGTATC 0 123 0 TCCATAGGTACACCCACTACCTCGGTCAGG 0 188 1 GGGTTGAATTCAATCAGCCCTGTATTTTGA 4 16 1 ACCAAAGAGTAAACCAGTCCTTGATTTTTT 4 110 1 GAAAACACCACCTACTTATAT 7 140 0 TATTCTTCCACACACCCCCACTCAAGGA 9 8 1 ATTACTCCATCACTCATCCCAATCCTAGCC 9 64 1 ACCTTTACATCAACCACTACAACCACGAAA 11 16 1 ACAACCACGAAAACCGGCAGGGTGATCATT 11 34 1 ACCTTTATGTCAACCACCACACCACGAAAA 11 68 1 CACACCACGAAAACCGGCACACCTAATCAT 11 85 1 AGTCAGGGCCCCATCACCACTGATCCTGCG 12 34 1 GATTGACTGTCCATCGGCCCTGATGGTCGG 12 80 0 GATGGACAGTCAATCAGCCGTCCCCCGAAC 12 95 1 CCCCGAACTTCAACCGCGCCATATAGGGGA 12 117 1 ********** MAP Score: 8.9407 Motif 8 CACCTGATGGCACCCGTCCTGACCGAGGTA 0 205 0 GAGGCTTCGACACCGACCATCAGGGCCGAT 12 68 1 AGATGGTTTACCCTGACCCTCCAGTCAGGG 12 12 1 ATCTCTGAATCACCGGCCTTTTTGCTTATA 12 224 0 ATTGACTGTCCATCGGCCCTGATGGTCGGT 12 79 0 ATTACTCCATCACTCATCCCAATCCTAGCC 9 64 1 GCCCCATCACCACTGATCCTGCGGGACGAG 12 41 1 TATTCTTCCACACACCCCCACTCAAGGA 9 8 1 TACAGAGGACCCCTAACCCTCCGGTCTAGC 12 155 1 TGGGCGGGACCCCCCATCATGACATGTTAT 8 17 0 TTTTATTTTGCCCCAACCTTGAGCCGGTAT 8 84 1 TTACTACCCCCACACTTATCTATGAA 8 219 0 AGTTCAGGATCATTGGCCCCCACAGTTACC 3 11 0 GACAGTCAATCAGCCGTCCCCCGAACTTCA 12 99 1 ATCACCTGCCTTCTGTGTACAT 3 76 0 ACCTTTATGTCAACCACCACACCACGAAAA 11 68 1 AACACCTTTACATCAACCACTACAACCACG 11 13 1 TCCATAGGTACACCCACTACCTCGGTCAGG 0 188 1 ********** MAP Score: 8.52165 Motif 9 GATATGTATCCACCCATAGACACTCTACCTATA 0 100 0 TCCATAGGTACACCCACTACCTCGGTCAGGACG 0 188 1 CACCTGATGGCACCCGTCCTGACCGAGGTAGTG 0 202 0 TTTTATTAAACACGCGTTCCTTCCTGATTAATC 0 248 0 TTAAATGCACCCATAAACGTTTTTATTAAA 0 271 0 GGATCATTGGCCCCCACAGTTACCC 3 2 0 GATGTCGGCACCGGCATAATTGCATAACAATGC 6 79 0 TCCTCGGGGACAGCCATGGTGTCTGCGATGCAT 6 125 1 TGGGCGGGACCCCCCATCATGACATGTTATGAA 8 14 0 TTTTGAATGTGAGCCATGGCTCCATCGGTGCCA 8 143 1 TTACTACCCCCACACTTATCTATGAAATA 8 216 0 TATTCTTCCACACACCCCCACTCAAGGAAAA 9 8 1 ACCTTTACATCAACCACTACAACCACGAAAACC 11 16 1 ACCTTTATGTCAACCACCACACCACGAAAACCG 11 68 1 TCCAGTCAGGGCCCCATCACCACTGATCCTGCG 12 31 1 ******* ** * MAP Score: 7.13501 Motif 10 AACTGTGGGGGCCAATGATCCTGAACTGCTTGA 3 14 1 AATTCAATCAGCCCTGTATTTTGAGGGTATTGA 4 22 1 TAATATGGATCCCGTTATTTCTGACTCAAACAG 7 21 0 TCTGGGCGGGACCCCCCATCATGACATGTTATG 8 16 0 GGGGGGTCCCGCCCAGATTCATGATATTCATGG 8 32 1 CCCAATCCTAGCCCTTGTTTTTTAACTATATAA 9 81 1 TGATCACCCTGCCGGTTTTCGTGGTTGTAGTGG 11 29 0 GATTAGGTGTGCCGGTTTTCGTGGTGTGGTGGT 11 80 0 GGGCCCCATCACCACTGATCCTGCGGGACGAGG 12 39 1 CTCCGGTCTAGCCCATTTTACTGATTATACTAA 12 173 1 TCTCTGAATCACCGGCCTTTTTGCTTATAGAAA 12 220 0 **** * *** ** MAP Score: 7.0296 Motif 11 CCAGAATTCTCAATACCCTCAAAATACAGGG 4 33 0 TCCAGCAAAGCCTTCAGTACCTAA 5 5 1 TGAAATCCCTCAAAGTCATACT 6 1 1 AATTGCATAACAATGCCCTCAGGATAACAAA 6 64 0 CCCACTCAAGGAAAACCTTTATAAATCTTGA 9 26 1 CGGAACACCTTTACATCAACCAC 11 2 1 CTACAACCACGAAAACCGGCAGGGTGATCAT 11 32 1 GGTGATCATTGCAAACCTTTATGTCAACCAC 11 54 1 ACCACACCACGAAAACCGGCACACCTAATCA 11 83 1 ******* *** MAP Score: 6.87288 Motif 12 GATATGTATCCACCCATAGACACTCTACCTATA 0 100 0 TCCATAGGTACACCCACTACCTCGGTCAGGACG 0 188 1 TTAAATGCACCCATAAACGTTTTTATTAAA 0 271 0 ATCTGGGCGGGACCCCCCATCATGACATGTTAT 8 17 0 TATTCTTCCACACACCCCCACTCAAGGAAAA 9 8 1 TCTACAGACCTTAACCCATCCAGATG 10 9 0 CGAAAACCGGCACACCTAATCATATATATCT 11 92 1 TCCAGTCAGGGCCCCATCACCACTGATCCTGCG 12 31 1 TCAATCAGCCGTCCCCCGAACTTCAACCGCGCC 12 104 1 GCTTACAGAGGACCCCTAACCCTCCGGTCTAGC 12 152 1 ******* * * * MAP Score: 4.02281 Motif 13 CCATAGGTACACCCACTACCTCGGTCAGGACGGGTGCCAT 0 189 1 TATTCTTCCACACACCCCCACTCAAGGAAAACCTTTA 9 7 1 CGGAACACCTTTACATCAACCACTACAACCACGAA 11 5 1 CCTTTACATCAACCACTACAACCACGAAAACCGGCAGGGT 11 17 1 TTTATGTCAACCACCACACCACGAAAACCGGCACACCTAA 11 71 1 ACACCACGAAAACCGGCACACCTAATCATATATATCT 11 86 1 AAGATGGTTTACCCTGACCCTCCAGTCAGGGCCCCATCAC 12 11 1 CCAGTCAGGGCCCCATCACCACTGATCCTGCGGGACGAGG 12 32 1 CGAGGCTTCGACACCGACCATCAGGGCCGATGGACAGTCA 12 67 1 GACAGTCAATCAGCCGTCCCCCGAACTTCAACCGCGCCAT 12 99 1 TTACAGAGGACCCCTAACCCTCCGGTCTAGCCCATTTTAC 12 154 1 **** *** * * * MAP Score: 3.74682 Motif 14 CCTTCCTGATTAATCTGTGAATAAGAGTCACCTG 0 229 0 ATAAAAACGTTTATGGGTGCATTTAA 0 275 1 TAAAGAGCAGTTAACGGTGAATCA 1 14 1 TATTGTATGATTATTTATATAAAATTGAGGT 2 20 1 CCGGTCAAGATTAAGTTTTTATAAGATCCCACCA 4 80 1 AATAGTCGTGTTAATTATTCATGTAATAACCTGT 6 161 1 AAAAAAAGGTTTAAATATGACTTTAGAATAATAA 6 222 1 ATGGATCCCGTTATTTCTGACTCAAACAGAAGGT 7 16 0 TGATCTCAAATTATATTTGGATATATTTATGGCA 7 101 0 CACCACCTACTTATATATACCTGATCTCAAATTA 7 122 0 AAATTGATTTTTAATTTTGAATGTGAGCCATGGC 8 129 1 ACCGTTGCTTTTAAATATGTCTTATCACAATAAC 8 181 1 ACCCCCACACTTATCTATGAAATATGTTATTGTG 8 206 0 CCCTTGTTTTTTAACTATATAAATAGCGGGGATA 9 92 1 **** * ** ** * MAP Score: 2.39045