AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_operons034_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944245470
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH1172	61	possible cation transporter
#1	MTH1174	30	cell division inhibitor related protein
#2	MTH1178	107	conserved protein
#3	MTH1894	34	aspartate aminotransferase homolog
#4	MTH1895	170	conserved protein

Motif 1
         ACTCAACCTCCCAGATCAAGT	0	1	1
GCATTAGCTCATCAACCATTAACTTGATCT	0	22	0
GCGGAGATTAATGAACCTTCAACCTCACAT	4	50	1
TTTAAGTGCCATGAACCTAAATATAATCTC	4	100	1
          ATCAACCTTCTCGGGTTCTT	4	160	0
          **********
MAP Score: 4.71183

Motif 2
AGCATTAGCTCATCAACCATTAACTTGATCT	0	22	0
    GTCAATTCAGCCCCATTTAGCATTAGC	0	44	0
       ACACTAAATCCATGATGAGCCGGT	1	3	1
GGGGCTTGTGGGACAGCCATTTAGGGAGGGG	2	13	1
AGTTTTTGCACCAGCACCATGCAATCAGCTG	2	54	0
GCTAGACAGCGGAGATTAATGAACCTTCAAC	4	42	1
GCTCCATGGGGCAATACCATGTGAGGTTGAA	4	67	0
TGGCACTTAAACTGCTCCATGGGGCAATACC	4	80	0
TGGAGCAGTTTAAGTGCCATGAACCTAAATA	4	92	1
TTGTATTCCCGGAGTTCCATGAGATTATATT	4	119	0
TGGAACTCCGGGAATACAATGTCATCATCAA	4	131	1
          ***** *****
MAP Score: 4.63348

Motif 3
        ACTCAACCTCCCAGATCAAGTT	0	2	1
TAGCATTAGCTCATCAACCATTAACTTGAT	0	24	0
    GTCAATTCAGCCCCATTTAGCATTAG	0	45	0
TGGCTGTCCCACAAGCCCCTCA        	2	2	0
AGCTGAAAAGCCAGACCCCTCCCTAAATGG	2	29	0
AGTTTTTGCACCAGCACCATGCAATCAGCT	2	55	0
GATTAATGAACCTTCAACCTCACATGGTAT	4	55	1
AGTTTAAGTGCCATGAACCTAAATATAATC	4	98	1
GAATACAATGTCATCATCAAGAACCCGAGA	4	142	1
         ATCAACCTTCTCGGGTTCTTG	4	159	0
          **********
MAP Score: 2.40987

Motif 4
        ACTCAACCTCCCAGATCAAGTT	0	2	1
TAATGAACCTTCAACCTCACATGGTATTGC	4	58	1
          **********
MAP Score: 0.481943