AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_operons063_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944246229
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH980	74	conserved protein
#1	MTH981	21	aminopeptidase P
#2	MTH982	104	unknown
#3	MTH1510	109	NH(3)-dependent NAD+ synthetase

Motif 1
        TGTGGTAATTATAAATAATAGG	0	2	1
AATAGGCGCCAGATAGTTAGTAACAGAGCA	0	26	1
TTCTATATATAAGGAGGTATACTCTTAATT	2	67	1
ATAACTATCAAAAGAGGTAGAAAAACTTAT	3	60	0
CTACCTCTTTTGATAGTTATATAAAATATA	3	70	1
   TGGTTAAAAGTAAGTAGGGTATATTTT	3	92	0
          **********
MAP Score: 1.84383

Motif 2
 TGTGGTAATTATAAATAATAGGCGCCAGATAGTTAGTAA	0	9	1
AGGCGCCAGATAGTTAGTAACAGAGCATGATGTTACACTG	0	29	1
          TCATCACCAGAGGACAGAGAG         	1	1	0
TGATGAAATCTGTACTGAACCAGGCACTGAAGAACATAAC	2	15	0
CACCCCATGTTCTATATATAAGGAGGTATACTCTTAATTA	2	58	1
GGATCGATGATTAATTTTACAGGAGGAGTATA        	3	2	0
ATATTTTATATAACTATCAAAAGAGGTAGAAAAACTTATA	3	59	0
          *    *  * *****   **
MAP Score: 0.981692