AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_sum_all005_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944247923 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH125 126 unknown #1 MTH126 88 inosine-5'-monophosphate dehydrogenase related protein VII #2 MTH141 102 conserved protein #3 MTH405 130 polyferredoxin #4 MTH603 116 conserved protein #5 MTH644 145 conserved protein #6 MTH739_MTH740 286 MTH739: conserved protein, MTH740: conserved protein #7 MTH816 43 sporulation protein IVFB related protein #8 MTH855 172 inosine-5'-monophosphate dehydrogenase related protein VIII #9 MTH992 27 inosine-5'-monophosphate dehydrogenase related protein IX #10 MTH994 122 N-ethylammeline chlorohydrolase related protein #11 MTH1072 67 hydrogenase expression/formation protein HypD #12 MTH1221 26 conserved protein #13 MTH1224 120 inosine-5'-monophosphate dehydrogenase related protein III #14 MTH1228 117 conserved protein #15 MTH1278 159 conserved protein #16 MTH1280 66 PET112-like protein #17 MTH1575 23 inosine-5'-monophosphate dehydrogenase related protein X #18 MTH1634 151 transcriptional control factor (enhancer-binding protein) #19 MTH1677 120 protein translocation complex sec61 gamma subunit related protein #20 MTH1678 26 transcription termination factor NusG #21 MTH1680 41 ribosomal protein L10a (E.coli L1) #22 MTH1682 52 ribosomal protein Lp1 #23 MTH1683 89 alanyl-tRNA synthetase #24 MTH1878 163 heterodisulfide reductase, subunit C #25 MTH1880 64 conserved protein #26 MTH1883 53 2-phosphoglycerate kinase Motif 1 ATCTCTGTAAACCTCCCTACAACTGCATTCCTGT 0 19 1 GTTCGCATCAAGCCCCCTCCAAATAGTATTTAAG 0 61 1 AGGAACAACTGGAACATTGAAGGTGGGTTTTTCA 5 22 0 CCTTTTTTCTGGCCTCCTAAACATCATCTTTCCA 5 53 1 AAAAATAACAGTCCCCCTCCACATACTGACCTGG 5 84 0 TGAAATCCCTCAAAGTCATACTTCTA 6 2 1 TCTAATTAATATATCACTGTATCTTTTTATGCTT 6 32 1 GCCGGTGCCGACATCACTGTATCTTTTATCCTCG 6 97 1 TTCTTTTGATGTCACACTGAAGTTCACATGCAGT 8 65 1 TGAGTTCACAGAACCACTGCATGTGAACTTCAGT 8 80 0 AATCCTTTGGCCTCCTCCATATATATATGATC 11 8 1 AAAGTATTCTGCACTACTGCAGATGTAACCCTGC 15 33 1 TACTGCAGATGTAACCCTGCAGCTACAGAAACAT 15 47 1 AGCTACAGAAACATCACTCAAGATTGTAACCCTG 15 67 1 ACTCAAGATTGTAACCCTGTAGCTACAGAAACAT 15 82 1 TTTGGATCCCTCAATCTTAATAT 17 3 1 CCTACTTGAGGCACCCTTCTACTTAACCATTTCC 24 21 1 CCAGAATGCTGTAACCTTAAAGGTTACACTCTCG 24 53 1 CTCTATATAAAGATTCCTAAAATTCGCGAGAGTG 24 79 0 * * ******* * MAP Score: 16.866 Motif 2 GATCTCTGTAAACCTCCCTACAACTGCATTCCTGTCCA 0 18 1 TTTAATGTGCTGGATCCGGGAATCTGGGTGTGCTGAGG 3 19 1 AGGCCTGATGTTGATCCCGTGAACCGGAAAAAAATTTA 3 54 1 CTTGCAGTATTGTCTGCAGAAAACAACAGGTTATTACA 6 182 0 TATTTAAATGAACATCCATATACCAGTAATCAGTTCAT 8 117 1 AAATCACCACAGTATCCAGAAAGCATTAAAGAAGATCC 10 82 1 ATTACACTTAAAGATCTATTTATCACGATCATATATAT 11 30 0 CAGACACACCAGTATCCAGACACCAGCAGCATCCCCCC 14 16 0 AGTTTATCTCCATGAAACTTTATAAAGTATTC 15 4 1 CTACTGCAGATGTAACCCTGCAGCTACAGAAACATCAC 15 46 1 CACTCAAGATTGTAACCCTGTAGCTACAGAAACATCAG 15 81 1 CTCCCTTTTTATGATCCGGTGAACTTCAGAGTATATTA 16 24 0 TTTGGATCCCTCAATCTTAATAT 17 2 1 AGAGTCTATAAAGATCCGGAGAGGGTGAGAGAATCAGC 18 81 1 AAATTTATAAATCTTGAAAACCACATAACTAACCC 21 7 1 AACCATTTCCAGAATGCTGTAACCTTAAAGGTTACACT 24 45 1 ** **** * * * * MAP Score: 13.4706 Motif 3 TCTCTGTAAACCTCCCTACAACTGCATTCC 0 20 1 TTCGCATCAAGCCCCCTCCAAATAGTATTT 0 62 1 TTCTGAAAAACCCACCTTCAATGTTCCAGT 5 19 1 AAAATAACAGTCCCCCTCCACATACTGACC 5 87 0 ATCATAAGCACCCACCTACAGAATTAATAA 8 36 0 AATCCTTTGGCCTCCTCCATATATATATG 11 9 1 CCAGCAGCATCCCCCCGACACC 14 2 0 GCTACCCGGGTCCCCATTCAACAGTTGAA 14 98 1 TGGACATGGTACCCCCTTCAGCATATGATC 18 46 1 CTTCCACACACCCCCACTCAAGGAAAACCT 19 14 1 ATCCCCCTTTATTTTTTTCCT 23 1 1 ********** MAP Score: 12.2717 Motif 4 CTATGTGGATAACATTTATATCTTGCTTTGAAT 1 16 1 ATTAATTAAAAATAATTATAATTATTATTCATA 1 59 1 ATGATATGATAATTTTTTTAATTTATCTAGCAC 2 33 0 TTATATTAACAATTATTATATGGTTGCGTTGAC 4 31 0 ATAAACGATAAAATTTAATAAATTTTAACATAA 4 60 1 TATCTTAATAAATGTTTATATATTTTATGTTAA 4 84 0 AAGCTAAAAAAAGGTTTAAATATGACTTTAGAA 6 217 1 TCCAGAACCCAGTTTTTATTAATAAAATTATTT 13 43 1 TTATTAATAAAATTATTTTAAGTAATAACGATA 13 58 1 TATCTCCATGAAACTTTATAAAGTATTCTGCAC 15 14 1 ACTCAAGGAAAACCTTTATAAATCTTGAAGGAT 19 29 1 TGTGGTTTTCAAGATTTATAAATTT 21 2 0 TGATCACCTCAAATTTTATTTTTTATGGGTTAA 22 28 0 GTAATGGCAAAAAATTTATTTTTCTTAATTCTG 23 41 1 TGAAAACAGTTTTTATAAATAGAATCAGAA 23 69 0 GAATTTTAGGAATCTTTATATAGAGATGAGAGT 24 88 1 TCTGGAATCCAGTTTTTATATAT 26 0 0 ** ******* * MAP Score: 12.2555 Motif 5 ATATAAATGTTATCCACATAGCATCTC 1 5 0 GGCCTCAGCACACCCAGATTCCCGGATCCAGC 3 27 0 GAAGGTGGGTTTTTCAGAAACCGGGTTC 5 6 0 TATGCTTTGTTATCCTGAGGGCATTGTTATGC 6 59 1 TTTAAATGAACATCCATATACCAGTAATCAGT 8 119 1 ATCACCACAGTATCCAGAAAGCATTAAAGAAG 10 84 1 AAGGACCCATCATCCAGAACCCAGTTTTTATT 13 31 1 GACACACCAGTATCCAGACACCAGCAGCATCC 14 20 0 GTCCTGGCCATATCCTCAGACACACCAGTATC 14 38 0 CCGGGTAGCCTATCCTGAAACACCTTAAAAGA 14 75 0 TATTCTTCCACACACCCCCACTCAAG 19 4 1 TACTTAACCATTTCCAGAATGCTGTAACCTTA 24 40 1 ******** ** MAP Score: 12.2131 Motif 6 AAACCTCCCTACAACTGCATTCCTGTCCATTA 0 27 1 GAACCCGGTTTCTGAAAAACCCA 5 1 1 TAATTAATATATCACTGTATCTTTTTATGCTT 6 34 1 CGGTGCCGACATCACTGTATCTTTTATCCTCG 6 99 1 AGTTCACAGAACCACTGCATGTGAACTTCAGT 8 80 0 GAACATCCATATACCAGTAATCAGTTCATTTA 8 126 1 CAGTACCCCACTTTCCTTTTTGAACT 10 4 1 CTGGAAAATCACCACAGTATCCAGAAAGCATT 10 77 1 CATCATCCAGAACCCAGTTTTTATTAATAAAA 13 38 1 ATCCTCAGACACACCAGTATCCAGACACCAGC 14 27 0 CTGCAGATGTAACCCTGCAGCTACAGAAACAT 15 49 1 TCAAGATTGTAACCCTGTAGCTACAGAAACAT 15 84 1 CTTCACATTTATCACGGAATTCAA 15 145 1 TTTGGATCCCTCAATCTTAATAT 17 5 1 CAGGGATTTTAGTCCAGGATCCTCTA 18 4 0 CTGGACTAAAATCCCTGAAATCCAGAATGGAC 18 19 1 TCTATTTATAAAAACTGTTTTCA 23 76 1 ATATATAAAAACTGGATTCCAGATTATCA 26 7 1 ATTCCAGATTATCACTGAATTCTTTTTGAGGT 26 25 1 * ***** **** MAP Score: 11.69 Motif 7 AATACTATTTGGAGGGGGCTTGATGCGAACTG 0 59 0 AATCTGGGTGTGCTGAGGCCTGATGTTGATCC 3 39 1 AAGATGATGTTTAGGAGGCCAGAAAAAAGGAA 5 51 0 GTCAGTATGTGGAGGGGGACTGTTATTTTTAA 5 88 1 CACATATTAAAGATGGGTGAAGAG 5 131 1 TCAAACCACTTGTGGGGTAATAGTT 6 271 1 CAAAAAGGAAAGTGGGGTACTG 10 0 0 CTGGAAAATCTGAGGAGTTATGTGCGATTTTT 10 34 1 ATATATATATGGAGGAGGCCAAAGGATT 11 6 0 GGTGTCGGGGGGATGCTGCTGGTGT 14 3 1 ATAAAGATCCGGAGAGGGTGAGAGAATCAGCA 18 88 1 GTTTTCCTTGAGTGGGGGTGTGTGGAAGAATA 19 10 0 GCTAGGATTGGGATGAGTGATGGAGTAATCTA 19 61 0 CATCTGGATGGGTTAAGGTCTGTAGA 20 5 1 ATGATGGGGTTAGTTATGTGGTT 21 28 0 ******** ** MAP Score: 11.134 Motif 8 GCGAACTGTAATGGACAGGAATGCAGTTGTAGGGAGGT 0 29 0 CAGCACACCCAGATTCCCGGATCCAGCACATTAAAGAT 3 16 0 TGAAAAACCCACCTTCAATGTTCCAGTTGTTCCTTTTT 5 22 1 TGGCCTCCTAAACATCATCTTTCCAGGTCAGTATGTGG 5 62 1 AAAGAATCATAAGCACCCACCTACAGAATTAATAAGAG 8 33 0 TATTTAAATGAACATCCATATACCAGTAATCAGTTCAT 8 117 1 TGATAAGAGAAGGACCCATCATCCAGAACCCAGTTTTT 13 22 1 ATATCCTCAGACACACCAGTATCCAGACACCAGCAGCA 14 23 0 GCAGGGTTACATCTGCAGTAGTGCAGAATACTTTATAA 15 29 0 CTGCAGCTACAGAAACATCACTCAAGATTGTAACCCTG 15 63 1 CTGTAGCTACAGAAACATCAGTCAAGATAAATTCCACA 15 98 1 CCTGGACTAAAATCCCTGAAATCCAGAATGGACATGGT 18 18 1 TCTACAGACCTTAACCCATCCAGATG 20 1 0 GCACCCTTCTACTTAACCATTTCCAGAATGCTGTAACC 24 31 1 ATATATAAAAACTGGATTCCAGATTATCACTGAA 26 6 1 * ** ******* MAP Score: 9.72114 Motif 9 TGTGCTAGATAAATTAAAAAAATTATCATAT 2 32 1 TAAACGATAAAATTTAATAAATTTTAACATA 4 61 1 TTTTAACATAAAATATATAAACATTTATTAA 4 82 1 GGAAGATCCTATCTTAATAAATGTTTATATA 4 95 0 GTGGACCATCACTTTTAAAAATAACAGTCCC 5 103 0 CAATACTGCAAGCTAAAAAAAGGTTTAAATA 6 208 1 ATCCTGAAACACCTTAAAAGATCCGGGTCCT 14 65 0 ATCTCCATGAAACTTTATAAAGTATTCTGCA 15 15 1 CCCTCTCCGGATCTTTATAGACTCTCAGAAG 18 75 0 GGCTGAAATCATATATAAAGAGGCTCATAAG 18 120 1 CTCAAGGAAAACCTTTATAAATCTTGAAGGA 19 30 1 CTTGTTTTTTAACTATATAAATAGCGGGGAT 19 94 1 AAATTTATAAATCTTGAAAAC 21 0 1 TTCTGATTCTATTTATAAAAACTGTTTTCA 23 69 1 AATTTTAGGAATCTTTATATAGAGATGAGAG 24 89 1 ATATATAAAAACTGGATTCCA 26 0 1 * ********* MAP Score: 9.21627 Motif 10 GTTTACAGAGATCTTGATGAG 0 0 0 CTTAAATACTATTTGGAGGGGGCTTGATGCG 0 64 0 CCAGGTCAGTATGTGGAGGGGGACTGTTATT 5 84 1 ATGCTTTGTTATCCTGAGGGCATTGTTATGC 6 60 1 AAACTTTTGAAGGCTGATGGGAA 8 2 0 GATCATATATATATGGAGGAGGCCAAAGGAT 11 11 0 CAGGGTTACAATCTTGAGTGATGTTTCTGTA 15 70 0 ATATTAAGATTGAGGGATCCAAA 17 6 0 AGAAGATCATATGCTGAAGGGGGTACCATGT 18 49 0 GTCTATAAAGATCCGGAGAGGGTGAGAGAAT 18 84 1 ACCTTTATAAATCTTGAAGGATAGATTACTC 19 40 1 CATCTGGATGGGTTAAGGTCTG 20 1 1 ** ******** MAP Score: 8.71213 Motif 11 AAGAGATTTATCATTTTCACAGGAGATC 0 108 1 AATTATCATATCATGTTTCTTGGGATATTCATT 2 52 1 ATTCATTCCATGATTTTTACCAGGAGGTTATAG 2 78 1 TAAATTTTTTTCCGGTTCACGGGATCAACATCA 3 59 0 TTCCAGTTGTTCCTTTTTTCTGGCCTCCTAAAC 5 42 1 CTCCTAAACATCATCTTTCCAGGTCAGTATGTG 5 66 1 AGGGGGACTGTTATTTTTAAAAGTGATGGTCCA 5 100 1 TATGAATAAATCATTTTTTATAGC 7 1 0 ACATAACTCCTCAGATTTTCCAGTTCAAAAAGG 10 24 0 CGATTTTTTCTCTTCTTTTCTGGAAAATCACCA 10 58 1 GCCAGGACCCGGATCTTTTAAGGTGTTTCAGGA 14 62 1 ACCTCAAATTTTATTTTTTATGGGTTAACTATT 22 23 0 TGCTAACCAGGGATATTTCAGGGT 24 149 1 CCTAAATTATTTATTTTTTCAGGGGAGTTAAAC 25 13 1 **** *** * ** MAP Score: 7.79295 Motif 12 AAACCAAGATAAGAGATTTATCATTTTCACA 0 98 1 ATATTAATTAAAAATAATTATAATTATTATT 1 57 1 TAGATAAATTAAAAAAATTATCATATCATGT 2 37 1 GTGAACCGGAAAAAAATTTAAGTAAATACGT 3 72 1 ATAAAATATATAAACATTTATTAAGATAGGA 4 89 1 GCTATAAAAAATGATTTATTCATAGCACC 7 8 1 CTGTGAACTCAAAATATTTAAATGAACATCC 8 103 1 AAAACCTTTTTTTACGAATTA 9 0 1 TTATTACTTAAAATAATTTTATTAATAAAAA 13 55 0 CCACTCAAGGAAAACCTTTATAAATCTTGAA 19 27 1 CTGTAATGGCAAAAAATTTATTTTTCTTAAT 23 39 1 ACCCCTAAATTATTTATTTTTTCAGGG 25 6 1 **** ****** MAP Score: 5.60045 Motif 13 GGAATGCAGTTGTAGGGAGGTTTACAGAGATC 0 18 0 AAATACTATTTGGAGGGGGCTTGATGCGAACT 0 60 0 GATCCGGGAATCTGGGTGTGCTGAGGCCTGAT 3 31 1 TAAACATTTATTAAGATAGGATCTTCC 4 99 1 ACTGGAACATTGAAGGTGGGTTTTTCAGAAAC 5 17 0 CAGGTCAGTATGTGGAGGGGGACTGTTATTTT 5 85 1 TTATTAATTCTGTAGGTGGGTGCTTATGATTC 8 36 1 GGTGTCGGGGGGATGCTGCTGGTG 14 2 1 TTAAGGTGTTTCAGGATAGGCTACCCGGGTCC 14 79 1 TCTATAAAGATCCGGAGAGGGTGAGAGAATCA 18 85 1 TTTCCTTGAGTGGGGGTGTGTGGAAGAATA 19 8 0 AGGGCTAGGATTGGGATGAGTGATGGAGTAAT 19 64 0 CATCTGGATGGGTTAAGGTCTGTA 20 2 1 TATTTATTTTTTCAGGGGAGTTAAACTCCCAT 25 20 1 TGAATTCTTTTTGAGGTGAGATC 26 40 1 ** ******* * MAP Score: 4.62943 Motif 14 CAAGATCTCTGTAAACCTCCCTACAACTGCATTCC 0 15 1 GTTCGCATCAAGCCCCCTCCAAATAGTATTTAAGA 0 61 1 CCGGTTTCTGAAAAACCCACCTTCAATGTTCCAGT 5 14 1 AAAAATAACAGTCCCCCTCCACATACTGACCTGGA 5 83 0 AAAGAATCATAAGCACCCACCTACAGAATTAATAA 8 36 0 AGCATTAAAGAAGATCCCGCACCTATATA 10 103 1 AATCCTTTGGCCTCCTCCATATATATATGATCG 11 8 1 AGACACCAGCAGCATCCCCCCGACACC 14 2 0 CAGACACACCAGTATCCAGACACCAGCAGCATCCC 14 19 0 AGGCTACCCGGGTCCCCATTCAACAGTTGAA 14 96 1 TACTGCAGATGTAACCCTGCAGCTACAGAAACATC 15 47 1 ACTCAAGATTGTAACCCTGTAGCTACAGAAACATC 15 82 1 AATGGACATGGTACCCCCTTCAGCATATGATCTTC 18 44 1 TATTCTTCCACACACCCCCACTCAAGGAAAACCT 19 9 1 * ***** ** ** MAP Score: 0.678003