AlignACE 3.0 10/20/99 AlignACE2 -i TH/TH_sum_all020_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944248970 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MTH216 96 acetyl-CoA synthetase #1 MTH217 134 acetyl-CoA synthetase #2 MTH218 140 chaperonin #3 MTH219 51 unknown #4 MTH220 227 flavoprotein A homolog (II) #5 MTH221 97 unknown #6 MTH222 51 unknown #7 MTH223 163 unknown #8 MTH224 300 conserved protein #9 MTH657 96 long-chain-fatty-acid-CoA ligase #10 MTH659 216 epoxidase #11 MTH660 119 unknown #12 MTH700 110 conserved protein #13 MTH702 27 acetyl-CoA synthetase related protein #14 MTH978 95 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase #15 MTH980 74 conserved protein #16 MTH981 21 aminopeptidase P #17 MTH982 104 unknown #18 MTH1192 76 conserved protein #19 MTH1193 146 transcriptional regulator #20 MTH1194 35 acetylpolyamine aminohydolase #21 MTH1603 63 acetyl-CoA synthetase #22 MTH1856 107 sodium/proline symporter (proline permease) Motif 1 TTATTAATAAAAAATTTATAATAAATATTATC 1 31 1 TTCACTTAAAAAACTTTATAATATAACTTTCA 19 107 1 AGCGTCAGGAAAAATTAATAATGATTATTAAT 12 74 0 AAATCGCTACAAAGTTAATAATATCTCGAGCA 18 19 0 TCTTCAGATAAACATTTATAAGGGAACATCCC 19 37 1 AGAAGTCATCAACTTTTATAAGATAGGGGATG 19 63 0 TTATTCTCATGATATTTATAATGTTGGTAGAT 11 84 0 TCAGCACCACAAATTGTATAATCACCCCCCCC 4 140 1 TCACCCCATAAAATTGTATAATTTAATAATGA 4 187 1 TCTGGCGCCTATTATTTATAATTACCACA 15 7 0 TTTAAACAGCAATTTTTTTAAACTGAGATTTT 10 154 1 CTAATGGACCAAAATTTTTAAATAATAAGTTT 8 243 1 TAAGATGAGAAACTTTATTAAGGGAAGAGACA 12 36 1 ATTATCTATCATGATTAATAATAGTAAAATAT 1 57 1 AGAGACATTTATCATTAATAATCATTATTAAT 12 61 1 ACTATTTTTTTTAATTAATAAACAT 4 3 1 CTCTTAATTAAACCTTATTAAATGGT 17 88 1 CATTTTTTTCGAGGTTATTAATAAAAAATTTA 1 17 1 CATATAAATAAATGTTTATATTACTGGAATTC 8 102 0 TACCATTTGCAATTTTTATATTAATCTGTGGT 8 184 1 CTTCTGTTAATATTTTTTTAATTCATGATTTA 21 37 0 CCGGCTTTGATTGATTTATAATTTTGAATCTA 14 18 1 ** ******** MAP Score: 18.0345 Motif 2 GTAGTAAGTTTCTCTCAACTTATATATTTTACTATTA 1 75 0 CGCCACCATCTCCAGTCAATTATTTATTTCCAGGAAG 2 15 1 AATCACTGCATCCTTTAAACTATGTTTCCTGCATTAC 3 22 0 TGATGTGATGTGCATTCAGATGTTTATTAATTAAAAA 4 17 0 GGACACTATATCCATAAATATAAATATGAACATCCAT 5 46 1 AATATGAACATCCATTCATATGTAAACTGAGGTGATT 5 68 1 CAGCAGTGGTGCCAGCCACATATTTATTACTTATACC 7 54 1 AGGGAATGGCTCCATAAAACTAACCATTCGCCCTAAC 8 22 0 TTTGAAGAATTCCAGTAATATAAACATTTATTTATAT 8 96 1 TTTATTTATATGCTTTCACTTAAACATTGGTTGATGG 8 122 1 TGGAATTCATCCCATGGATATGACTACCATTTGCAAT 8 160 1 AGCCTCAGTCTCCTTATAAGTGTGTATTAAACTTATT 8 266 0 GTTGCATCTCTGCAGGGATGTGAACATTGACATATTT 10 47 1 CTAAATGATCTCCGGTTATCTGAAAATATGTCAATGT 10 70 0 AGGGGATGTTCCCTTATAAATGTTTATCTGAAGATGG 19 34 0 CTCCTTTAAATCCATCAAATTATAATTAATGATAATG 22 72 0 *** * * *** ** MAP Score: 12.2783 Motif 3 CCCACCTCATTTTTTTCGAGGTTATTAA 1 2 1 ACAGGATCTTCTACACAAATTATTTATAGAACCTTA 2 101 1 TAAATCACTGCATCCTTTAAACTATGTTTCC 3 30 0 GAAAAATCAGCACCACAAATTGTATAATCACCCCCC 4 134 1 AAATCAGCACCACCTCACCCCATAAAATTGTATAAT 4 173 1 TTAATCACCTCAGTTTACATATGAATGGATG 5 76 0 ACTAACCATTCGCCCTAACTTTTTCACTGGA 8 5 0 ATCCGGTGTGCCCCCTAAATTCTTAAAAGGGAATGG 8 50 0 ATTACTGGAATTCTTCAAATTATTAAATGATCCGGT 8 79 0 AATCCATTACCCCCTCAGATATTACATGGAATGGTT 10 14 1 TATGCTGATGCTCTGCACATTTTTAAACAGCAATTT 10 133 1 CTCTCTACTTTTTTTATTCTCATGAT 11 103 0 TTCATCATGGCACCCCATGTTCTATATATAAGGAGG 17 48 1 TAAGGGAACATCCCCTATCTTATAAAAGTTGATGAC 19 55 1 * ** ** ** ** * MAP Score: 11.4678 Motif 4 TAAATCACTGCATCCTTTAAACTATGTTTCCTG 3 28 0 ATCTGAATGCACATCACATCATATTTACTGGCAG 4 33 1 TTGTATAATCACCCCCCCCAAAATCAGCACCACC 4 153 1 AATCAGCACCACCTCACCCCATAAAATTGTATAA 4 174 1 CATGGACACTATATCCATAAATATAAATATGAAC 5 43 1 ATAAATATGAACATCCATTCATATGTAAACTGAG 5 65 1 GATCCGGTGTGCCCCCTAAATTCTTAAAAGGGAA 8 53 0 AGAAGCCTATACCTCCCGAGATAAGGAAGCAGCT 9 27 1 CGAATCCATTACCCCCTCAGATATTACATGGAAT 10 12 1 CTCCTAAATGATCTCCGGTTATCTGAAAATATGT 10 76 0 CCGGTAACCTACTTCCGAAAATCTACCAACATTA 11 64 1 TTTCATCATGGCACCCCATGTTCTATATATAAGG 17 47 1 TTAAGAGTATACCTCCTTATATATAGAACATGGG 17 61 0 TAATTACCCTCCTTTTTTATTTTCCCATCT 19 6 1 ATAAGGGAACATCCCCTATCTTATAAAAGTTGAT 19 54 1 GCACCCATCTATATTCTGCCAACT 21 0 1 TCAACATCCTCCTTTAAATCCATCAAA 22 90 0 ****** **** MAP Score: 7.95104 Motif 5 TTTCTGGTTTCTGCAGACTTACTGGAAGAGTTGCAGATGG 2 58 0 ATGCACATCACATCATATTTACTGGCAGACTAGTTGTCTG 4 39 1 AAAATTCGTTCTTCTGGCATAAAGAAAGAGAACATGACCC 4 84 1 TTATTAAATTATACAATTTTATGGGGTGAGGTGGTGCTGA 4 176 0 ACCGGGCAAACATTCATACGGATAGTGAAAACACATG 5 7 1 ATTCAGTGAACCCCCAGAGTAGAGGCAGAGAACGCCCGGA 6 10 1 GATGCCCCCTAATCCAAATTAAGGAATGACCACAGATTAA 8 204 0 TAAGTTTAATACACACTTATAAGGAGACTGAGGCTGGTAA 8 268 1 AAGCCTATACCTCCCGAGATAAGGAAGCAGCTTGAGGAGC 9 29 1 GTGGAGGAAGATTAACTTATAAGGGTGGATTT 9 74 1 TTAAGATGAGAAACTTTATTAAGGGAAGAGACATTTATCA 12 35 1 CAGAGCAGGGCTACGTCTCTGTGGGCTGATCCTTTACGGG 14 55 1 ATCTTCAGATAAACATTTATAAGGGAACATCCCCTATCTT 19 36 1 * * ** *** *** MAP Score: 7.81531 Motif 6 AAGGGTCATAAACTGAACGCCGCCCTCATCGAAG 0 37 1 AAGAACTGAAAAGACACCTTCGCCATGAACTCGG 0 68 1 CCACACGCCACCATCTCCAGTCAATTAT 2 4 1 GGCATAAAGAAAGAGAACATGACCCATTCCAGCC 4 99 1 CCAGCCTGAAAAATCAGCACCACAAATTGTATAA 4 127 1 ACCCCCCCCAAAATCAGCACCACCTCACCCCATA 4 163 1 AAATTCTTAAAAGGGAATGGCTCCATAAAACTAA 8 36 0 GCAGAGAAAGAAGCCTATACCTCCCGAGATAAGG 9 19 1 TACGAATCCATTACCCCCTCAGATATTA 10 4 1 AACACCCCGTAAAGGATCAGCCCACAGAGACGTA 14 66 0 AGGTTTAATTAAGAGTATACCTCCTTATATATAG 17 69 0 AAACATTTATAAGGGAACATCCCCTATCTTATAA 19 46 1 ** ** **** ** MAP Score: 7.77317 Motif 7 ACTGAAAAGACACCTTCGCCATGAACTCGGAC 0 72 1 CCACACGCCACCATCTCCAGTCAATTATTT 2 8 1 AATCCATCTGCAACTCTTCCAGTAAGTCTGCA 2 55 1 AAGAGAACATGACCCATTCCAGCCTGAAAAAT 4 109 1 ATTGTATAATCACCCCCCCCAAAATCAGCACC 4 152 1 GTTATCACCATTCCGGGCGTTCTCTGC 6 34 0 CAGCAAGAACCGCCAGTTCCAGTTAGTCAGCA 7 27 1 TTTTTAATAGCACCAATCCCATATCTATAACA 7 121 1 TGCAGAGATGCAACCATTCCATGTAATATCTG 10 29 0 CAGTTCACCTGCTCGAGATATTATTAA 18 5 1 **** ****** MAP Score: 7.4759 Motif 8 TGTATAATCACCCCCCCCAAAATCAGCACCACCTCACC 4 154 1 GCACCACCTCACCCCATAAAATTGTATAATTTAATAAT 4 179 1 TTAATCACCTCAGTTTACATATGAATGGATG 5 76 0 ATTCAGTGAACCCCCAGAGTAGAGGCAGAGAACGCCC 6 9 1 GAGGCAGAGAACGCCCGGAATGGTGATAAC 6 31 1 AATAACCTCCTACATGCCAGCAAGAACCGCCA 7 4 1 GATCCGGTGTGCCCCCTAAATTCTTAAAAGGGAATGGC 8 49 0 AGAAGCCTATACCTCCCGAGATAAGGAAGCAGCTTGAG 9 27 1 CGAATCCATTACCCCCTCAGATATTACATGGAATGGTT 10 12 1 GATTACACCTCATCAGCGTCAGGAAAAATTAATA 12 86 0 TCATCACCAGAGGACAGAGAG 16 1 0 TTAAGAGTATACCTCCTTATATATAGAACATGGGGTGC 17 57 0 ATTATTTATCCCCTGAATCAGAAAATGATAACCAT 20 7 1 ****** ** * * MAP Score: 6.97142 Motif 9 AAACATAGTTTAAAGGATGCAGTGATTTA 3 32 1 CTTTTAAGAATTTAGGGGGCACACCGGATC 8 57 1 CTTAATTTGGATTAGGGGGCATCTAATGGA 8 221 1 ATACACACTTATAAGGAGACTGAGGCTGGT 8 276 1 ACCTCCCGAGATAAGGAAGCAGCTTGAGGA 9 37 1 AGATTAACTTATAAGGGTGGATTT 9 82 1 AGGCACATCCAAAAGGAGAGTGAT 11 4 0 AATCACCAATATAAGGATGCCGGTAACCTA 11 45 1 AGAAACTTTATTAAGGGAAGAGACATTTAT 12 43 1 TGTTCTATATATAAGGAGGTATACTCTTAA 17 65 1 GGGAAAATAAAAAAGGAGGGTAATTA 19 6 0 ATAAACATTTATAAGGGAACATCCCCTATC 19 44 1 ********** MAP Score: 6.85376 Motif 10 TCATAAACTGAACGCCGCCCTCATCGAAGAACTGAAAA 0 42 1 CCACACGCCACCATCTCCAGTCAATTATTTATTT 2 6 1 CAAAATCAGCACCACCTCACCCCATAAAATTGTATAAT 4 171 1 ATAAATATGAACATCCATTCATATGTAAACTGAGGTGA 5 65 1 AATAACCTCCTACATGCCAGCAAGAACCG 7 1 1 GCCAGCAAGAACCGCCAGTTCCAGTTAGTCAGCAGTGG 7 25 1 GATCCGGTGTGCCCCCTAAATTCTTAAAAGGGAATGGC 8 49 0 AGAAGCCTATACCTCCCGAGATAAGGAAGCAGCTTGAG 9 27 1 CGAATCCATTACCCCCTCAGATATTACATGGAATGGTT 10 12 1 CTCCTAAATGATCTCCGGTTATCTGAAAATATGTCAAT 10 72 0 AAGGATGCCGGTAACCTACTTCCGAAAATCTACCAACA 11 57 1 TTAAGAGTATACCTCCTTATATATAGAACATGGGGTGC 17 57 0 ATAAGGGAACATCCCCTATCTTATAAAAGTTGATGACT 19 54 1 ATTATTTATCCCCTGAATCAGAAAATGATAACCAT 20 7 1 *** ** *** ** MAP Score: 5.10168 Motif 11 AGAGGAATCCATCTGCAACTCTTCCAGTAAGTCT 2 50 1 AAACATCTGAATGCACATCACATCATATTTACTG 4 29 1 CCCCCCCAAAATCAGCACCACCTCACCCCATAAA 4 165 1 AAATATAAATATGAACATCCATTCATATGTAAAC 5 61 1 AGAATTTAGGGGGCACACCGGATCATTTAATAAT 8 63 1 ATTTGGATTAGGGGGCATCTAATGGACCAAAATT 8 225 1 AAGCAGCTTGAGGAGCACCTCGTGGAGGAAGATT 9 53 1 ATCCCTGCAGAGATGCAACCATTCCATGTAATAT 10 32 0 CTGTTTAAAAATGTGCAGAGCATCAGCATATGCA 10 129 0 CTACCACACAGGGGACACCGCCTGG 13 12 1 CTGGAAACACCCCGTAAAGGATCAGC 14 79 0 ACATTTATAAGGGAACATCCCCTATCTTATAAAA 19 48 1 *** *** * * ** MAP Score: 4.28327 Motif 12 CCACACGCCACCATCTCCAGTCAATTATTTATT 2 8 1 TGCAGATGGATTCCTCTTCCTGGAAATAAATAATT 2 32 0 AATCCATCTGCAACTCTTCCAGTAAGTCTGCAGAA 2 55 1 TAATCACCCCCCCCAAAATCAGCACCACCTCACCC 4 158 1 CAGCAAGAACCGCCAGTTCCAGTTAGTCAGCAGTG 7 27 1 GCTTGAGGAGCACCTCGTGGAGGAAGATTAACTTA 9 58 1 TGTTCTTCAGTGCCTGGTTCAGTACAGATTTCATC 17 19 1 CAGTTCACCTGCTCGAGATATTATTAACTT 18 5 1 TTTTTTATTTTCCCATCTTCAGATAAACATTTATA 19 22 1 ATTATTTATCCCCTGAATCAGAAAATGATAACCA 20 9 1 * *** ***** * MAP Score: 2.46405 Motif 13 CAAAATGAGTAATGCAGGAAACATAGTTTAAA 3 14 1 ACGAATTTTTGTAGCAGACAACTAGTCTGCCA 4 61 0 CCCCAGAGTAGAGGCAGAGAACGCCCGGAATG 6 21 1 TAATAAATATGTGGCTGGCACCACTGCTGACT 7 51 0 TAAGGAGACTGAGGCTGGTAACC 8 287 1 CCAATATAAGGATGCCGGTAACCTACTTCCGA 11 50 1 ***** ** *** MAP Score: 2.28695 Motif 14 GGTGTCTTTTCAGTTCTTCGATGAGGGCGGCGTT 0 52 0 AATCCATCTGCAACTCTTCCAGTAAGTCTGCAGA 2 55 1 TAGCAGACAACTAGTCTGCCAGTAAATATGATGT 4 48 0 GAACATGACCCATTCCAGCCTGAAAAATCAGCAC 4 113 1 TAACCTCCTACATGCCAGCAAGAACCGCCAGTTC 7 12 1 GCTTGAGGAGCACCTCGTGGAGGAAGATTAACTT 9 58 1 GGAATGGTTGCATCTCTGCAGGGATGTGAACATT 10 41 1 GATTACTTAACAGTTCGTCATGCATATGCTGATG 10 109 1 ATGTGCCTAACATATCTGCAATCACCAATATAAG 11 26 1 GGCACATACCGGCTTTGATTGATTTATA 14 4 1 CTGGAAACACCCCGTAAAGGATCAGCCCACA 14 74 0 ** ***** ** * MAP Score: 0.908424