AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_sum_all031_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944249527
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH953	35	ATP synthase, subunit D 
#1	MTH961	212	unknown
#2	MTH964	103	unknown
#3	MTH966	21	conserved protein

Motif 1
    CCACCCCCAACATCCTTTTTCAGGAG	0	6	1
AATTCACCCATCAACATCCATATGATTGCC	1	10	1
TGATTGCCGATCACCCTTAAAGACTTAAAT	1	32	1
CACCATCACATCACAATTCCACGCAACGGA	2	10	0
CGGGCAGATCCCACCATCACATCACAATTC	2	21	0
TCGATCAGTTCCAGCATCACCGGGCAGATC	2	41	0
          **********
MAP Score: 2.48208

Motif 2
CACCCCCAACATCCTTTTTCAGGAGAGTTAGC	0	11	1
ACCCATCAACATCCATATGATTGCCGATCACC	1	15	1
ATGTTAATTGAGTCATTTTATGAAATTTAATT	1	76	0
CAGTTAACCAAGCCTTTTGAATCCCTCCTGAT	1	106	0
TGAATATCATAAACTTTTGAATAAAATAGTAA	1	150	1
ACCGCGAAATAGACCTTTGCATTAATAGG   	1	193	1
          * ** *******
MAP Score: 1.30697