AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_sum_all035_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944249632
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH1615	34	conserved protein
#1	MTH1618	118	conserved protein
#2	MTH1619	104	conserved protein (adenylate kinase related)
#3	MTH1621	83	GTP-binding protein, GTP1/OBG family 

Motif 1
        AACTATCCCAGAGGGGCCTCAGGAGG	0	2	1
ATGGTGTACTGACTGCACAAGAAGAATATTATAA	1	45	0
TACACCATCTCAATGTGCAAGATGTGGATGTTCT	1	71	1
  GGTTTAACCTCTCATAACGGAATAGAACATCC	1	96	0
GGTGGCTGTTCAATGGTGGTGGTAAGACGCAGAC	2	12	0
TTTTCATTGCCTCTGTGTGCGGTGGCTGTTCAAT	2	32	0
CACACAGAGGCAATGAAAAAGGAGAAATGGGCCA	2	47	1
GCCACGGTTCCAGTCAGCAAGGCGAGACTGTGAA	2	77	1
          *****   **** *
MAP Score: 4.45572

Motif 2
AAGGTTTTTAAATATGGAAACACAAAGCACT	1	15	1
TTAACCTCTCATAACGGAATAGAACATCCAC	1	94	0
AGAGGCAATGAAAAAGGAGAAATGGGCCACG	2	52	1
GATATAAAATATAAGGGAAAATATTTAATAA	3	42	1
AAAATATTTAATAATGGATAATAGAGAACAC	3	59	1
          **** ******
MAP Score: 3.74037