AlignACE 3.0 10/20/99
AlignACE2 -i TH/TH_sum_all065_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944250522
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MTH1080	27	conserved protein
#1	MTH1082	109	conserved protein
#2	MTH1091	300	conserved protein

Motif 1
     ACAGCTTCATCATCACATCCCACAAAT	1	5	1
CCCACAAATTTTCATATTTATAAATCTTTCCA	1	28	1
ATATATATTAATCATAATTCCAACCATATTAA	1	78	1
CAATACCCCCTACATAATGTCAATGACTAAT 	2	9	0
TCTATCTTGATTCTTAATTCAATACCCCCTAC	2	28	0
ATTCAAGTTTTTCACCTTCTCACAGATCAGCA	2	180	1
CAGATTCCACTTCTTCATATCATCACCAAACA	2	258	1
          ********  **
MAP Score: 3.69587

Motif 2
   ACAGCTTCATCATCACATCCCACAAATTTTC	1	7	1
CATATTTATAAATCTTTCCATTCAATTGTAAGGA	1	40	1
ATATATTAATCATAATTCCAACCATATTAAAATA	1	80	1
ATACCCCCTACATAATGTCAATGACTAAT     	2	5	0
TGAAATCAGACATTAGGCCATTCAAGATTCAGTA	2	62	1
TTGCAAGTTCCAGGTCAGCTATCCTGCGGTATAT	2	124	0
AACTTGAATCCATCTGCACCATGCAGCTGACTTG	2	155	0
CACCTTCTCACAGATCAGCATACCCCGCAGGAAG	2	192	1
GCATACCCCGCAGGAAGGCCTTCAAGAACTTTCT	2	209	1
          *** *   ******
MAP Score: 2.16346

Motif 3
     ACAGCTTCATCATCACATCCCACAAATTTTCATA	1	5	1
AACATATATATTAATCATAATTCCAACCATATTAAAATA	1	75	1
TCTTGATTCTTAATTCAATACCCCCTACATAATGTCAAT	2	17	0
TGGATTCAAGTTTTTCACCTTCTCACAGATCAGCATACC	2	177	1
CACCTTCTCACAGATCAGCATACCCCGCAGGAAGGCCTT	2	192	1
CAGATTCCACTTCTTCATATCATCACCAAACACGGAACT	2	258	1
          *   ***  ** ***   *
MAP Score: 1.17978

Motif 4
    TTAAAACACCATCTTGATTAATAGAAC   	0	7	0
CATCACATCCCACAAATTTTCATATTTATAAATC	1	20	1
GATAATATACCGCAGGATAGCTGACCTGGAACTT	2	120	1
AATCCATCTGCACCATGCAGCTGACTTGCAAGTT	2	149	0
TTCACCTTCTCACAGATCAGCATACCCCGCAGGA	2	190	1
TTTCTTCTCTCAGAGGACGGCAGATTCCACTTCT	2	238	1
CATCACCAAACACGGAACTGATCAAGAGCCTG  	2	278	1
          *** *  * *****
MAP Score: 1.17966

Motif 5
TAATGTCTGATTTCAGCTCTATCTTGATTCTT	2	45	0
GACTTGCAAGTTCCAGGTCAGCTATCCTGCGG	2	129	0
GACCTGGAACTTGCAAGTCAGCTGCATGGTGC	2	142	1
TGCAGATGGATTCAAGTTTTTCACCTTCTCAC	2	171	1
TTTCACCTTCTCACAGATCAGCATACCCCGCA	2	189	1
AAGAAAGTTCTTGAAGGCCTTCCTGCGGGGTA	2	212	0
GGACGGCAGATTCCACTTCTTCATATCATCAC	2	252	1
          ** *** *****
MAP Score: 1.17429

Motif 6
         ACAGCTTCATCATCACATCCCACAAATTTT	1	1	1
CACAAATTTTCATATTTATAAATCTTTCCATTCAATTGT	1	30	1
GGATAACATATATATTAATCATAATTCCAACCATATTAA	1	71	1
TCTATCTTGATTCTTAATTCAATACCCCCTACATAATGT	2	21	0
CAGATGGATTCAAGTTTTTCACCTTCTCACAGATCAGCA	2	173	1
TTTTCACCTTCTCACAGATCAGCATACCCCGCAGGAAGG	2	188	1
ACGGCAGATTCCACTTCTTCATATCATCACCAAACACGG	2	254	1
          *   **  ***   * ***
MAP Score: 0.903636