AlignACE 3.0 10/20/99
AlignACE2 -i TM/TM_fusions016_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944251407
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TM0140	40	indole-3-glycerol phosphate synthase
#1	TM0143	93	response regulator

Motif 1
     AGCCAAAAAGAAAGATATTCTGGAG	0	5	1
AAAGATATTCTGGAGATAGACGGCGAGAAC	0	20	1
CGAGTTGAACCGATGACAGATTAATGGTAT	1	19	0
AATATATTATCAGAGAAAAAAACGAGTTGA	1	41	0
TATGAAAACTCAGGGATAGGGTGGAGATTG	1	73	1
          **********
MAP Score: 1.05475