AlignACE 3.0 10/20/99
AlignACE2 -i TM/TM_fusions016_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944251408
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TM0140	40	indole-3-glycerol phosphate synthase
#1	TM0143	93	response regulator

Motif 1
         TTTTAAATGATACCATTAATCTGTCA	1	1	1
AACTCGTTTTTTTCTCTGATAATATATTATTATGA	1	43	1
TATCCCTGAGTTTTCATAATAATATATTATCAGAG	1	56	0
          ***  ** ***  **
MAP Score: 0.0103873