AlignACE 3.0 10/20/99
AlignACE2 -i TM/TM_fusions018_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944251430
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TM0666	163	serine acetyltransferase
#1	TM0882	135	O-acetylhomoserine sulfhydrylase
#2	TM1266	140	hypothetical protein
#3	TM1270	50	cystathionine gamma-synthase
#4	TM1400	204	aspartate aminotransferase, putative

Motif 1
AGTATATTAACACAGGAGGAGGGATATTTCA 	0	9	0
AAAATTTTATCACGGGAGGTGGAGAGA     	1	118	1
AAAATCCTGACACCGGGGGAGGGGATGGATGG	2	76	1
        CTCTCAGAAGGTGGTATAATATGA	2	2	1
GAATCAAACGATCTGGAGGTGGTGGATATGGT	0	135	1
CACAAATTTCAACAGGGAGGGGATAGGC    	4	6	0
AATCACAAACCTCCTGAGGTGGAGGGGAAAAT	2	49	1
GGTACACAATCACAACAGGAGGCCTACTC   	3	31	1
CCTCTCCCGGCACGTGGAGAGGGGGTTTTCGT	2	117	1
CACCACCATCCTGGAAAGGGGGAGTTCC    	4	186	1
ACCTTTTCATCACAGAAAGGTGAACCTCTTCA	0	65	0
GTAATACTAAATCTAAAAGAGGACATCAGAAA	1	89	1
GTATAATATGAACAGAAAGTGAGAAAAATCAC	2	23	1
TCTCCACGTGCCGGGAGAGGGGTATACTTCCA	2	105	0
ACCATCTCAAATGTGGAGGTGATACTT     	1	5	0
TTTTGTGAAAAAAGTGAAGAGGTTCACCTTTC	0	51	1
          *** ***** **
MAP Score: 31.0328

Motif 2
  TGAAATATCCCTCCTCCTGTGTTAATATA	0	8	1
    AAGTATCACCTCCACATTTGAGATGGT	1	6	1
      TCTCTCCACCTCCCGTGATAAAATT	1	120	0
TCAGGATTTTCCCCTCCACCTCAGGAGGTTT	2	55	0
TTCCATCCATCCCCTCCCCCGGTGTCAGGAT	2	79	0
TGGAAGTATACCCCTCTCCCGGCACGTGGAG	2	105	1
 AACGAAAACCCCCTCTCCACGTGCCGGGAG	2	120	0
     GCCTATCCCCTCCCTGTTGAAATTTG	4	5	1
ATATTCCCAACACCTCTCAAGATTATAGCAA	4	64	1
   GGAACTCCCCCTTTCCAGGATGGTGGTG	4	186	0
          ********* *
MAP Score: 20.9924

Motif 3
     TGAAATATCCCTCCTCCTGTGTTAA	0	5	1
AGTGAAGAGGTTCACCTTTCTGTGATGAAA	0	63	1
TACCATATCCACCACCTCCAGATCGTTTGA	0	138	0
      AAGTATCACCTCCACATTTGAGAT	1	4	1
ATATTTCTTACACACCTCTGAAACATTTGA	1	42	1
      TCTCTCCACCTCCCGTGATAAAAT	1	121	0
TTCATATTATACCACCTTCTGAGAG     	2	5	0
GATTTTCCCCTCCACCTCAGGAGGTTTGTG	2	52	0
TCCATCCATCCCCTCCCCCGGTGTCAGGAT	2	79	0
GATGGAAGTATACCCCTCTCCCGGCACGTG	2	103	1
   AACGAAAACCCCCTCTCCACGTGCCGG	2	123	0
      GCCTATCCCCTCCCTGTTGAAATT	4	4	1
AATTTGTGTTTACACCATCAATGGTCGTTG	4	30	1
TAATATTCCCAACACCTCTCAAGATTATAG	4	62	1
AATAACAAGCACCACCATCCTGGAAAGGGG	4	177	1
          **********
MAP Score: 17.793

Motif 4
     TGAAATATCCCTCCTCCTGTGTTAATATACT	0	5	1
GTGAAGAGGTTCACCTTTCTGTGATGAAAAGGTTTC	0	64	1
CGATACCATATCCACCACCTCCAGATCGTTTGATTC	0	135	0
AGAAATATTTTACACCATCTCAAATGTGGAGGTGAT	1	14	0
         TCTCTCCACCTCCCGTGATAAAATTTT	1	118	0
CTGTTCATATTATACCACCTTCTGAGAG        	2	2	0
GTGAGAAAAATCACAAACCTCCTGAGGTGGAGGGGA	2	41	1
AGGGGAAAATCCTGACACCGGGGGAGGGGATGGATG	2	71	1
GAAGTATACCCCTCTCCCGGCACGTGGAGAGGGGGT	2	107	1
       GAGTAGGCCTCCTGTTGTGATTGTGTACC	3	31	0
     GCCTATCCCCTCCCTGTTGAAATTTGTGTTT	4	5	1
GTATAATATTCCCAACACCTCTCAAGATTATAGCAA	4	59	1
TAAATATGCTTCATCCGTCTGTAAAAATTCTGGTAG	4	125	1
ATAACAAGCACCACCATCCTGGAAAGGGGGAGTTCC	4	178	1
          **  ** ****  * *
MAP Score: 11.7803

Motif 5
CTCAGAAGGTGGTATAATATGAACAGAAAGT	2	12	1
    ACATAAGGTAAAATATGATGCGGTACA	3	6	1
TTTGAGATGGTGTAAAATATTTCTTACACAC	1	26	1
CAATGGTCGTTGTATAATATTCCCAACACCT	4	48	1
AAAGCCTTTGTGTAGTATATTAACACAGGAG	0	23	0
TAAAAATTCTGGTAGTATAATTAGTTAAAAA	4	146	1
TACAGACGGATGAAGCATATTTATCAAAAGG	4	117	0
TTGATTCAATGGAATTATATCAACCTAATTG	0	111	0
          **** ******
MAP Score: 7.42858