AlignACE 3.0 10/20/99 AlignACE2 -i TM/TM_operons003_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944251635 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TM0013 161 conserved hypothetical protein #1 TM0023 60 methyl-accepting chemotaxis protein #2 TM0030 62 oligopeptide ABC transporter, permease protein #3 TM0031 24 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein #4 TM0032 300 transcriptional regulator, XylR-related #5 TM0122 247 ferric uptake regulation protein #6 TM0399 300 response regulator #7 TM0402 300 ammonium transporter #8 TM0404 47 deoxycytidylate deaminase, putative #9 TM0429 28 methyl-accepting chemotaxis protein #10 TM0431 80 sugar ABC transporter, permease protein #11 TM0432 246 sugar ABC transporter, periplasmic sugar-binding protein, putative #12 TM0470 82 conserved hypothetical protein #13 TM0475 73 pyrazinamidase/nicotinamidase-related protein #14 TM0476 34 hypothetical protein #15 TM0477 82 outer membrane protein alpha #16 TM0478 30 tyrosyl-tRNA synthetase #17 TM0481 300 conserved hypothetical protein #18 TM0536 183 hypothetical protein #19 TM0570_TM0571 113 TM0570: cell division protein FtsY, TM0571: heat shock serine protease, periplasmic #20 TM0644 27 hypothetical protein #21 TM0645 59 NH(3)-dependent NAD(+) synthetase, putative #22 TM0703 42 competence-damage inducible protein, putative #23 TM0711 51 hypothetical protein #24 TM0717 290 propionyl-CoA carboxylase, gamma subunit #25 TM0826 127 hypothetical protein #26 TM0828 29 sugar kinase, pfkB family #27 TM0839 54 rod shape-determining protein RodA #28 TM0840 39 hypothetical protein #29 TM0842 37 response regulator #30 TM0852 268 conserved hypothetical protein #31 TM0916_TM0917 340 TM0916: conserved hypothetical protein, TM0917: phosphate permease, putative #32 TM0918 34 methyl-accepting chemotaxis protein #33 TM0992 300 hypothetical protein #34 TM1145_TM1146 479 TM1145: conserved hypothetical protein, TM1146: methyl-accepting chemotaxis protein #35 TM1182 73 chromosome segregation SMC protein, putative #36 TM1263 49 phosphate ABC transporter, permease protein #37 TM1264 224 phosphate ABC transporter, periplasmic phosphate-binding protein #38 TM1358 50 conserved hypothetical protein #39 TM1428 108 methyl-accepting chemotaxis protein #40 TM1580 118 transcriptional regulator, putative #41 TM1632 62 conserved hypothetical protein #42 TM1655 36 response regulator DrrA #43 TM1656 62 hypothetical protein #44 TM1658 73 S-adenosylmethionine synthetase #45 TM1666 104 succinyl-diaminopimelate desuccinylase, putative #46 TM1682 223 conserved hypothetical protein #47 TM1726 300 alanyl-tRNA synthetase-related protein #48 TM1833 82 methyl-accepting chemotaxis-related protein #49 TM1834 134 alpha-glucosidase Motif 1 AAACCTTTCGAAGGGAGGGGTAAGAG 19 6 0 CCCTTTCTGGCTGGGAGGGGAGGACTCGAA 6 120 1 ATACGAAATACAGGGAGGTGTTTTT 49 119 1 CAGAACACACCAGGGAGGGAAAAAC 20 12 1 ATATGTGAATAGAGGAGGGGGATTTAC 21 7 0 TCTGATTTTAAAGGGAGGGA 43 52 1 AACCCTTGAAAAAGGAGGGGTGAA 18 169 1 ATACTTGAATCTGGGAGGTGTTTTCA 45 88 1 GAAAACAAAACAGGGAGGAGAGTGG 10 65 1 AGAAAAAATTTAGGGAGGTGTTTAC 45 5 0 GGCCGAAAAAAGGGGAGGAGGTTTCTCCTC 8 23 0 AAAACACACCACAGGAGGGGTCGTA 31 5 0 CAAATAAATATGGGGAGGGAGGATACCCTC 10 31 0 ATTAGTGATAAAGGGAGGAGTTCGCA 29 21 1 TCTTACCAGCATGGGAGGTGAAAAC 34 464 1 TTGATAACTGCAAGGAGGTGAAAAT 35 5 0 TGATTGCCTTCGGGGAGGGTATCCTCCCTC 10 17 1 AATCTAACGTGTGGGAGGGGATCGGT 35 57 1 AATTCGTTCCAGAGGAGGTGCATACT 37 6 0 ATTTATTCTGAGGGGAGGTAAGATGTT 14 17 1 GACACAAAGTATGGGAGGGACGAAAGTCCC 18 21 0 AAACACAAGGAGGGACTTTCGTCCC 18 5 1 ATATTTACCAAAAGGAGGTGTTTTT 7 285 1 AACACCGAAACCGGGAGGGTGAAGCC 32 18 1 GGTTTCCTTTCGGGAGGAGAAACCTCCTC 8 9 1 AAATCTTATGTTAGGAGGGGAGAGTT 11 230 1 TAACTATGGAAGAGGAGGAGAAAGC 9 13 1 ATCATATCACTGAGGAGGGATCGT 22 28 1 TACCACACGAAAGGGAGGAAAGAGGAACGG 40 11 0 GAGGGGAAGATTGGGAGGAGGTCAATACAT 46 77 0 AACATTTCAGCAGGGAGGTTTCAGAC 39 92 1 AATATCATATTAAGGAGGGATACTC 31 325 1 TAAACTAAAAGTGGGAGGGATAAATT 38 6 0 TAAAATCTATCCTGGAGGTGATTGG 25 5 0 TTGTATCACATCAGGAGGGAAAAACCT 30 251 1 AGTCGGGAAACCAGGAGGTAGAAAGG 19 97 1 GATCAATGAGAAGGGAGGTTTGTCCC 15 66 1 AAAATCCTGATGTGGAGGTGTCTCTT 37 208 1 AAAACCGGCTGGAGGAGGAGAAA 24 277 1 TTCTTTATGTCGTGGAGGTAGAAGAGCC 17 282 1 TCGTTTGAAATCTGGAGGTGACAAT 0 146 1 AATTCTGAACTTTGGAGGGATTAATA 33 284 1 AAGATCAGCGAAAGGAGGATGGGAG 44 58 1 TAGATAAGAAGCAGGAGGAATATGGA 4 284 1 TGTACAACACTGTGGAGGAACAGAAA 41 46 1 ATCATTAAATAGTGGAGGATAGATT 38 35 1 TGGATCCGCTGGTGGAGGTTCGAGTCCTCC 6 138 0 GGAATAAATTTCTGGAGGATTTTATATGTC 7 109 0 ********** MAP Score: 78.8762 Motif 2 CTCCGAAGAGCCCCTTTATTTTGTATCACATCAG 30 231 1 CTCCTGATTTTTGTTTTAACAAAG 5 0 1 AACATCCCCCTGTGTGTTATCATATCACTG 22 6 1 ATCATCACCCCTCGGTGTTCTTATTTTACTA 46 202 0 TGAAATGATACCCCAAGATTTTATATAATTGATT 45 38 0 CCACTCTCCTCCCTGTTTTGTTTTCGTGG 10 61 0 AATTCTCACTCCCCACTCTGTTTTTGTGGAACCC 2 36 0 GGGGAAATTTCCCCTTCTTCTTTTTCTTTATGTC 17 259 1 TTCACCCCTCCTTTTTCAAGGGTTTTTC 18 165 0 GGGGAAATTTCCCCTTCTTTTTTGTCTGGAGCGG 17 239 0 TTTCTGTTCCTCCACAGTGTTGTACAATACATA 41 39 0 TCCATATTCCTCCTGCTTCTTATCTATCTTCCT 4 277 0 CTTTTCCCCCACTATCTTCTTTGGATTTTC 48 62 0 GAGGAGAAACCTCCTCCCCTTTTTTCGGCCTCCC 8 23 1 ACTTTCGTCCCTCCCATACTTTGTGTCTTGTCTT 18 24 1 CTCCTCACTTTTGACTTCGAGGTG 26 0 1 GATTTAGCACTCCCTTCTTTTGAGTGCTAATAA 30 9 1 TGTATTTGTTCTCCATTGTTTTGAAGTTTTTCTC 24 74 1 TGCAATGCATCCCCTTTTTCTTTATCCACAGACC 6 84 0 AAAAAAAGAACCCCATGGTGTTTGTTTTTTGTTT 7 188 1 TTGATTCTAACCCCAAACCTTTAATTGGACTTGT 25 86 0 GGCAGAGCACCTGACTTTTAATCAGGGGGTC 17 7 1 GAGGCATCACCTCGTTTTTGATTCTAACCCC 25 106 0 GGTATCCTCCCTCCCCATATTTATTTGCCACGAA 10 34 1 GTAAACACCTCCCTAAATTTTTTCTATCAATC 45 8 1 CACCCCGATTTTTGACCTTGATCA 6 286 0 TAACTGCTATCACCTCTTCGTTCTCTTCTGAATA 24 151 0 TGCTCTAGCACACCAGATCTTTCTCCGGTAAAAC 47 40 0 AATTTATCCCTCCCACTTTTAGTTTATCATTAA 38 9 1 ATTTTCACCTCCTTGCAGTTATCAATTTTATC 35 8 1 ATATAAAATCCTCCAGAAATTTATTCCCGAAAAT 7 112 1 ACCGATCCCCTCCCACACGTTAGATTTTATCAT 35 50 0 AATCTATCCTCCACTATTTAATGATAAACTAA 38 28 0 GTAAATCCCCCTCCTCTATTCACATATTCT 21 6 1 GAGATACACCCCCCACGGCCTTGGCGGGCTCGAA 31 224 1 TTCCAACCTGCACCCTTTCTTTCAATCGCTTGAT 47 272 0 AAAAACACCTCCCTGTATTTCGTATCCACCAG 49 112 0 GCCTGAAAGGCCCCTTTATGTATAATATAATGTG 48 25 1 ***** **** * MAP Score: 37.39 Motif 3 ACATAAAGAAAAAGAAGAAGGGGAAATTTCCCC 17 259 0 TTGTTGAAGAAAAGAAGACCAGGTATTCAGAAG 24 128 1 TGTCTCAAACAATGAAGACTAGGAAAACCCAAC 31 71 1 GGTGTATCTCAAGGGGGATAGGGGGGTCAACTT 31 201 0 AGATCAGCGAAAGGAGGATGGGAG 44 59 1 GAAAGGGAGGAAAGAGGAACGGA 40 0 0 GAGGCCGAAAAAAGGGGAGGAGGTTTCTCCTCC 8 22 0 CGCTCCAGACAAAAAAGAAGGGGAAATTTCCCC 17 240 1 TCTCTTTCAGAACGAAGAGTCGGCTTAACATTT 37 122 1 GTCTGTGGATAAAGAAAAAGGGGATGCATTGCA 6 85 1 ATTATACCATAATGAAAAAAGGGGCTGAACGCC 39 35 0 AGCTCCTTGGAAAGAGCATCGGGAATAAAATCA 4 112 1 GAAAATAGAAAGTGAAGAAAAGGGTCAATGCTC 47 150 1 AAAAGAATTCAAGAAGGAAGAGGGATTCTCGGA 30 61 1 AAAAAACTCAAAGGGAGATCAGAGTCCCTATGT 33 110 0 TCATCGGGTCAGGGGGGATCGGGGGGATGAGGG 18 57 1 GAATATGTGAATAGAGGAGGGGGATTTAC 21 6 0 AACGTCTTGAAAAGAAAAAAAGGGGCGTTCAGC 39 12 1 AAACGGAAGCAACGGACAACGGGGCTGATACCG 40 48 1 AAATCTGAGTAAAAAAGAGTGGATCAACATAAT 12 10 1 CCAATCCCCTGAAGAGGATGGGACTTTTGGTAG 33 22 0 CTCTAACTATGGAAGAGGAGGAGAAAGC 9 8 1 AGCAGAGAAAAACGAGGATACGAAGCGTGGAAA 24 244 1 AGCCCGAAGAGGGGAAGATTGGGAGGAGGTCAA 46 82 0 CTCGAAGAACAAGAAAGAGAAGAGTTCTTCAAG 47 239 1 CCCCTGACCCGATGAAGACAAGACACAAAGTAT 18 39 0 TGGAAAATCCAAAGAAGATAGTGGGGGAAAAG 48 60 1 TTCAGAAGAGAACGAAGAGGTGATAGCAGTTAT 24 153 1 ACGAAAACAAAACAGGGAGGAGAGTGG 10 63 1 ACTTTGTTAAAACAAAAATCAGGAG 5 2 0 GAAGATAGATAAGAAGCAGGAGGAATATGGA 4 279 1 TCTATAACAGAACGGAAAATAGAATTCTACGAA 37 68 0 GAAATCACACAAAGAAAACCTGGAAACTAAGAA 37 170 1 AAGACTTTCAAGTAAAGAAGAGAGTTC 28 4 0 ** ***** *** MAP Score: 29.3756 Motif 4 ACAGTGAGAGGTGTTATAATCGACTATGGTGAATGTGAA 0 30 0 GTTGCATGTAGTGATAGAATCAAATGGGGATTAATTCTT 0 103 1 ATACCGTATTATGGTATAATGAAAATGGATGGCAGATGT 5 93 0 TGAAAATTCGGTGATAAAATCCCTTTGAAGTATCAGACA 11 181 1 TTTGGACGGGATGGTATAATCACCACAGGATTTAACTGT 15 27 1 CATATTCTACATGTTAAAATCCCAGAGGGTGACCACA 21 32 1 TCCCTCCTCAGTGATATGATAACACACAGGGGGATGTT 22 9 0 AACGTCTCCAGGGTTAAAATCTATCCTGGAGGTGATTGG 25 10 0 TAAAGGTTTGGGGTTAGAATCAAAAACGAGGTGATGCCT 25 97 1 TCGATGTTAAAATTAGTGATAAAGGGAGGAGT 29 3 1 TTTAAAATGTGTGCTAAACTATTATTAGCACTCAAAAGA 30 25 0 CCCTCCTGATGTGATACAAAATAAAGGGGCTCTTCGGAG 30 231 0 AGGGTTCAAAGTGATACAATAGAAAACACACCACAGGAG 31 18 0 GTGGCCCGATGTGATAGAATTTACACAGCAAATATCATA 31 295 1 CGTAGAACAAATGCTATAATGGTAGGAATTCTGAACTTT 33 258 1 TGAGATCGTGATGGTACAATTACACATGGGAAATGTGCT 34 151 1 TCATTGTGGAGTGATAAAATTGATAACTGCAAGGAGGTG 35 15 0 TCACTCCACAATGATAAAATCTAACGTGTGGGAGGGGAT 35 40 1 AGAACGTTTTGTGCTATAATTCGTTCCAGAGGAGGTGCA 37 14 0 AAACTAAGAAGTGGTAAAATCCTGATGTGGAGGTGTCTC 37 193 1 CCACTATTTAATGATAAACTAAAAGTGGGAGGGATAAAT 38 11 0 TCCCTTTCGTGTGGTAAGATTTGAAACGGAAGCAACGGA 40 25 1 ATGTTAAAATAGTATAGAAACCAGATCTG 42 0 1 ATATTTTTTTAGGATATACTTGAATCTGGGAGGTGTTTT 45 73 1 TGGCTTAGAAGTGCTAAAACTTTAGTAGGTCGCACAGAA 46 129 0 GCTCAAAGAAACGATAAAATACATTCAGGATACCCTCGA 47 205 1 *** ** *** ** MAP Score: 24.1419 Motif 5 TCATATGACAGTGAGAGGTGTTATAATCGA 0 46 0 CCCTCCCAGCCAGAAAGGGGATGCAATGCA 6 109 0 CCCTTTCTGGCTGGGAGGGGAGGACTCGAA 6 120 1 GGTTTCCTTTCGGGAGGAGAAACCTCCTC 8 9 1 CTCTAACTATGGAAGAGGAGGAGAAAGC 9 8 1 TAAATATGGGGAGGGAGGATACCCTCCCCG 10 27 0 GAAAACAAAACAGGGAGGAGAGTGG 10 65 1 CCGGCAAGTGCCGGGGGTTGATTTGCGGTG 13 17 0 AAAATTTATTCTGAGGGGAGGTAAGATGTT 14 14 1 TGTGATCAATGAGAAGGGAGGTTTGTCCC 15 63 1 CTATCTTGGTGCGAGAGGTGGGACTTGAAC 17 137 0 TCTTTTTTGTCTGGAGCGGGCGACGGGATT 17 228 0 TTCATCGGGTCAGGGGGGATCGGGGGGATG 18 56 1 TTCATCGTTTCAAGAGGATGTTACGGAGAT 18 113 0 AAAAACCCTTGAAAAAGGAGGGGTGAA 18 166 1 AAACCTTTCGAAGGGAGGGGTAAGAG 19 6 0 GTCGGGAAACCAGGAGGTAGAAAGG 19 98 1 CAGAACACACCAGGGAGGGAAAAAC 20 12 1 TATGTGAATAGAGGAGGGGGATTTAC 21 6 0 TGATAACACACAGGGGGATGTT 22 2 0 TATCATATCACTGAGGAGGGATCGT 22 27 1 CTATTCCGAACAGAAAGATGGTGATCATTA 24 17 0 AAAAAACCGGCTGGAGGAGGAGAAA 24 275 1 ATTAGTGATAAAGGGAGGAGTTCGCA 29 21 1 TAGCACTCAAAAGAAGGGAGTGCTAAATC 30 9 0 AGAATTCAAGAAGGAAGAGGGATTCTCGGA 30 64 1 TGTATCACATCAGGAGGGAAAAACCT 30 252 1 CGCCAAGGCCGTGGGGGGTGTATCTCAAGG 31 220 0 AACACCGAAACCGGGAGGGTGAAGCC 32 18 1 CTTCAGGGGATTGGAAGGAGGTCGACTTCT 33 41 1 CACAGATTTTCTGAGAGGATATGTGTTTCC 33 154 1 ATTCTGAACTTTGGAGGGATTAATA 33 285 1 ACTACGTCGCCAGAGAGGTGAGAATATGAA 34 208 1 AAATTGATAACTGCAAGGAGGTGAAAAT 35 8 0 AATCTAACGTGTGGGAGGGGATCGGT 35 57 1 TAAACTAAAAGTGGGAGGGATAAATT 38 6 0 AACATTTCAGCAGGGAGGTTTCAGAC 39 92 1 TTGAATCCCTCCGGAAGGAGACACAACGA 41 9 0 GAAACCAGATCTGAAAGGAG 42 26 1 CAGAAATGCCCCGCAAGGGGGCCAGCTTTC 43 26 0 TATAAGATCAGCGAAAGGAGGATGGGAG 44 55 1 ATACTTGAATCTGGGAGGTGTTTTCA 45 88 1 GAGGGGAAGATTGGGAGGAGGTCAATACAT 46 77 0 AATAAGAACACCGAGGGGTGATGAT 46 208 1 AAGGATCTGAAAGGGGCCTGAAAGGC 48 6 1 ATACGAAATACAGGGAGGTGTTTTT 49 119 1 ********** MAP Score: 23.914 Motif 6 TACGAAAAATCGTTCTTTTTGAGAACGTTTTGTGCTATAATT 37 32 0 CTCACAAAATCGTTCTCTTTCAGAACGAAGAGTCGGCTTAAC 37 109 1 TGCTTCTTATCTATCTTCCTCAGAAAGAAATTATAACGATAT 4 255 0 TCGAGTCCTCCCCTCCCAGCCAGAAAGGGGATGCAATGCATC 6 107 0 TTCTATTTTCCGTTCTGTTATAGAACGATAGTCTCACAAAAT 37 77 1 TCCCGTCGCCCGCTCCAGACAAAAAAGAAGGGGAAATTTCCC 17 230 1 CACACCAGATCTTTCTCCGGTAAAACGAACAGGTAAGTATCC 47 24 0 CAAGTCCCACCTCTCGCACCAAGATAGAGCAGGCGGGTGTAG 17 140 1 ACCGTGTTGAGGGTCCTCATCAGAAAGGATATTGTCAACACC 40 77 1 GGTTTCCTTTCGGGAGGAGAAACCTCCTCCCCTTTTTT 8 6 1 AACACTGTCACTATTCCGAACAGAAAGATGGTGATCATTACC 24 15 0 AAATCTGAGTAAAAAAGAGTGGATCAACATAA 12 0 1 ATACAGAATAGTTTCTGTGAAAAAAAGCAGAGAAAAACGAGG 24 219 1 AGAAAAGGGTCAATGCTCTGGAGAACGTGGTGATCCCCCAGC 47 165 1 GAAGCGTTTGAATTCATGGAAAAAACGTTCGGAAAGTATATA 49 63 1 TGTCTCAATACTATCAATTCAAAAAACCGCTGTCAATTATGA 7 71 0 ATGTGTTGGAAAATCCAAAGAAGATAGTGGGGGAAAAG 48 54 1 AGAAGACCAGGTATTCAGAAGAGAACGAAGAGGTGATAGCAG 24 140 1 TCTGTAAAAGCGCTCGCTGTTAGATACATAGGGACTCTGATC 33 85 1 TCGGAACTTGACTTTAGAAAGAGAAAGCTGGTACTATATATA 30 89 1 TGTAACCTTTTTTTAAGAAAGATTGTGATAAACTAT 44 4 1 * ** ****** * MAP Score: 12.8648 Motif 7 GGGATTAATTCTTGAAATCGTTTGAAATCTGGAGGTGACAAT 0 129 1 TACAATATAACTTGCAAATGCTTTGCATTTGCAGGTGAGAGT 5 215 1 AACACCACCCCTTGAACTATCCCTGTTCTTGATGTATAATTTGA 6 209 0 GTTTGATTAACTTGAAGAACAATCGATTACGAGTGATTAGAAAC 11 127 0 GTTAATCAAACTTGACACGGATGAAAATTCGGTGATAAAATCCC 11 160 1 AAAACTCTTGAATTTCCTTTGGACGGGATGGTATAATCAC 15 6 1 TTCCGCCACTCTCGCACCGCTGGTGACCCGGGTGGGATTCGAAC 17 45 0 AGTCCCACCTCTCGCACCAAGATAGAGCAGGCGGGTGTAGCTCA 17 142 1 AGAGCACCAGCTTGCCAAGCTGGGGGTCGCGGGTTCGAATCCCG 17 191 1 TACTTTGTGTCTTGTCTTCATCGGGTCAGGGGGGATCGGGGGGA 18 40 1 CTTAAATTTTCTTGAAAAACCCTTGAAAAAGGAGGGGTGAA 18 152 1 TTAAAACATCCTTGAAAACACCCCGTGAACGGCCGGT 23 3 0 CTCTTCTTTACTTGAAAGTCTTAGATTTGAGGGG 28 15 1 ATTCTCGGAACTTGACTTTAGAAAGAGAAAGCTGGTACTATATA 30 85 1 ****** * ** * MAP Score: 8.8708 Motif 8 TAGTCGATTATAACACCTCTCACTGTCATA 0 43 1 GACACATCCCCGGTGCTTTGC 1 1 1 TATGGTTCTGAAACATCCCCGGCGCAAAGC 1 24 0 ATTTTCTAAAATAAACCCCTTAAAAAAATC 5 38 1 AAAAAACGTGAAACACCACCCCTTGAACTA 6 234 0 AAAAACACCTCCTTTTGGTAAA 7 288 0 TTTCGGGAGGAGAAACCTCCTCCCCTTTTT 8 17 1 ACCACCGCAAATCAACCCCCGGCACTTGCC 13 15 1 TACAACAAAACAAAACCCCCGGCAAGTGCC 13 35 0 GGGACAAACCTCCCTTCTCATTG 15 69 0 ACATCCTTGAAAACACCCCGTGAACGGCCG 23 12 0 AAGCGTGGAAAAAAACCGGCTGGAGGAGGA 24 266 1 CCAATCACCTCCAGGATAGATT 25 2 1 CCCCCTTGAGATACACCCCCCACGGCCTTG 31 217 1 TTTTTTGTATAAAAACCCCGCCAAATGTGG 31 269 1 AGTTTCAACACCCCCACCACACTAT 34 5 1 TGAAGCGTACAGAACCCGCACTAGATCCTC 34 251 0 AGTATGCACCTCCTCTGGAACGA 37 3 1 AAGAGACACCTCCACATCAGGAT 37 211 0 GTAAACACCTCCCTAAATTTTT 45 2 1 TGAAAACACCTCCCAGATTCAAG 45 91 0 GTCAAGATGTATTGACCTCCTCCCAATCTT 46 71 1 AAAAACACCTCCCTGTATTTCG 49 122 0 ********** MAP Score: 7.32424 Motif 9 CTCGCATCTCTCCTTTTATGGTTCTGAAACATC 1 37 0 TCAATTCTCACTCCCCACTCTGTTTTTGTGGAACC 2 37 0 ACCTCCTTTGTATATGGATAAAGG 3 8 0 TCCATATTCCTCCTGCTTCTTATCTATCTTCCT 4 277 0 ATGCATTGCATCCCCTTTCTGGCTGGGAGGGGAGG 6 108 1 CGTTAGACGACCTCCCAACGGCCTTTCAAATTATA 6 184 1 GGTTTCCTTTCGGGAGGAGAAACCTCC 8 2 1 GGAGGAGAAACCTCCTCCCCTTTTTTCGGCCTCCC 8 22 1 GCTTTCTCCTCCTCTTCCATAGTTAGAG 9 6 0 GGGAGGGTATCCTCCCTCCCCATATTTATTTGCCA 10 29 1 CCACTCTCCTCCCTGTTTTGTTTTCGTGGCAAA 10 57 0 AACTCTCCCCTCCTAACATAAGATTTTCG 11 227 0 GAACCCACGACCCCCTGATTAAAAGTCAGGTGCTC 17 14 0 AGGGGAAATTTCCCCTTCTTTTTTGTCTGGAGCGG 17 239 0 AGGGGAAATTTCCCCTTCTTCTTTTTCTTTATGTC 17 258 1 CCCCCCGATCCCCCCTGACCCGATGAAGACAAGAC 18 48 0 TTCACCCCTCCTTTTTCAAGGGTTTTTCAAG 18 162 0 CTCTTACCCCTCCCTTCGAAAGGTTTCCGGTTT 19 8 1 GTTTTTCCCTCCCTGGTGTGTTCTGTA 20 8 0 TTTCTCCTCCTCCAGCCGGTTTTTTTCCACGCT 24 267 0 GATTTAGCACTCCCTTCTTTTGAGTGCTAATAAT 30 9 1 GAGAATCCCTCTTCCTTCTTGAATTCTTTTAAAAT 30 56 0 ACGGGGTTATCCCCCAGCTGATTTTGAGTCAGCCG 30 162 0 AGGTTTTTCCCTCCTGATGTGATACAAAATA 30 247 0 TGAAAGTTGACCCCCCTATCCCCCTTGAGATACAC 31 198 1 TTGAGATACACCCCCCACGGCCTTGGCGGGCTCGA 31 222 1 GGGACTCTGATCTCCCTTTGAGTTTTTTATCCGTT 33 115 1 ACCGATCCCCTCCCACACGTTAGATTTTATCAT 35 50 0 AATTTATCCCTCCCACTTTTAGTTTATCATTAA 38 8 1 GTTCCTCTTTCCTCCCTTTCGTGTGGTAAGATTTG 40 13 1 TCGTTGTGTCTCCTTCCGGAGGGATTCAATATG 41 8 1 CTCCCATCCTCCTTTCGCTGATCTTATAACAG 44 51 0 TCCTCCCAATCTTCCCCTCTTCGGGCTCGGAGATA 46 88 1 ****** *** * MAP Score: 6.78185 Motif 10 CTTTGCGCCGGGGATGTTTCAGAACCATAAA 1 25 1 AATAATTACACGGATGTTTCATAACAGACTT 6 28 0 ATCAAGAACAGGGATAGTTCAAGGGGTGGTG 6 220 1 AGTTCAAGGGGTGGTGTTTCACGTTTTTTTC 6 235 1 TAATTGACAGCGGTTTTTTGAATTGATAGTA 7 74 1 CTAATCCAACATGGGGTTTGTGCCCTCTAAA 7 159 1 TTTGGTAAATATGTTTGTTGACTCTTTTAAG 7 266 0 AAAAAAGGGGAGGAGGTTTCTCCTCCCGAAA 8 17 0 AATAAATATGGGGAGGGAGGATACCCTCCCC 10 28 0 ACTGAGATATCTGATGTTTCAAATTTTCACG 11 18 1 TCCAATTATTGTGTGTGTTCTTATGAAACCA 11 89 0 GGCACTTGCCGGGGGTTTTGTTTTGTTGTAT 13 35 1 TCAATGAGAAGGGAGGTTTGTCCC 15 68 1 GCTGAAGCCCGTGTGGGTTCAAGTCCCACCT 17 121 1 CAGGGGGGATCGGGGGGATGAGGGACACGCA 18 66 1 TCCTTTTTCAAGGGTTTTTCAAGAAAATTTA 18 154 0 ACATCCCCCTGTGTGTTATCATATCACTGAG 22 11 1 GCCGTTCACGGGGTGTTTTCAAGGATGTTTT 23 14 1 GTTTGTTCTCGTGTGGTATGGTCCCACC 27 7 0 TCAAAATCAGCTGGGGGATAACCCCGTGCGG 30 170 1 GGATAACCCCGTGCGGGTTCAAGTCCCGCCC 30 185 1 CCCTCCTGTGGTGTGTTTTCTATTGTATCAC 31 16 1 AAGGCCGTGGGGGGTGTATCTCAAGGGGGAT 31 215 0 ATACAAAAAAATGCGGGCTCTTTCGAGCCCG 31 248 0 CTCCCGGTTTCGGTGTTATCAACCT 32 4 0 ATAGTGTGGTGGGGGTGTTGAAACT 34 4 0 AGAGGATCTAGTGCGGGTTCTGTACGCTTCA 34 250 1 AACCGTGAATCTGTGGTTTCAGGGGAAAAGC 34 328 1 GGTTTTCTTTGTGTGATTTCACATGGTTTGT 37 159 0 CATTTCAGCAGGGAGGTTTCAGAC 39 94 1 TGAATCTGGGAGGTGTTTTCA 45 93 1 AAGAACACCGAGGGGTGATGAT 46 211 1 TTTCTTTGAGCTGGGGGATCACCACGTTCTC 47 185 0 *** ******* MAP Score: 6.67267 Motif 11 CTCGCATCTCTCCTTTTATGGTTCTGAAACATC 1 37 0 TCTTTTCCCGGCCCCACTTCGGGGCCGGG 2 3 1 TCAATTCTCACTCCCCACTCTGTTTTTGTGGAACCC 2 36 0 CGTTAGACGACCTCCCAACGGCCTTTCAAATTATAC 6 184 1 TGTTAACAATCTTCCCAGTCAAACTGAAACATTCTC 7 37 1 GGGAGGGTATCCTCCCTCCCCATATTTATTTGCCAC 10 29 1 CCACTCTCCTCCCTGTTTTGTTTTCGTGGCAAA 10 57 0 CCCTCCCTACTGAGATATCTGATGTTT 11 1 1 TCGGTGATAAAATCCCTTTGAAGTATCAGACATCAA 11 188 1 AACTCTCCCCTCCTAACATAAGATTTTCGA 11 226 0 GGGACAAACCTCCCTTCTCATTGATCACAGTTAA 15 58 0 AAGGGGAAATTTCCCCTTCTTTTTTGTCTGGAGCGG 17 239 0 AAGGGGAAATTTCCCCTTCTTCTTTTTCTTTATGTC 17 257 1 GAGGGACTTTCGTCCCTCCCATACTTTGTGTCTTGT 18 19 1 CTCTTACCCCTCCCTTCGAAAGGTTTCCGGTTTC 19 8 1 TACCTCCTGGTTTCCCGACTAATATTAAGCATACCA 19 81 0 GTTTTTCCCTCCCTGGTGTGTTCTGTA 20 8 0 GTAAATCCCCCTCCTCTATTCACATATTCTACATGT 21 10 1 AACATCCCCCTGTGTGTTATCATATCACTG 22 4 1 TATCCTCGTTTTTCTCTGCTTTTTTTCACAGAAACT 24 228 0 GAACTCTCTTCTTTACTTGAAAGTCTTA 28 2 1 TGCGAACTCCTCCCTTTATCACTAATTTTAACAT 29 13 0 GTTCCGAGAATCCCTCTTCCTTCTTGAATTCTTTTA 30 60 0 CACGGGGTTATCCCCCAGCTGATTTTGAGTCAGCCG 30 162 0 AGGTTTTTCCCTCCTGATGTGATACAAAATA 30 247 0 TGAAAGTTGACCCCCCTATCCCCCTTGAGATACACC 31 198 1 GGCTTCACCCTCCCGGTTTCGGTGTTATCAACCT 32 10 0 GGGACTCTGATCTCCCTTTGAGTTTTTTATCCGTTA 33 115 1 ATCAGGATTTTACCACTTCTTAGTTTCCAGGTTTTC 37 183 0 AATTTATCCCTCCCACTTTTAGTTTATCAT 38 4 1 AGGGGCTGAACGCCCCTTTTTTTCTTTTCAAGACGT 39 13 0 GTCTGAAACCTCCCTGCTGAAATGTTTTTGAAGA 39 84 0 GTTCCTCTTTCCTCCCTTTCGTGTGGTAAGATTTGA 40 13 1 TCCCAATCTTCCCCTCTTCGGGCTCGGAGATACTTT 46 91 1 AACGTGGTGATCCCCCAGCTCAAAGAAACGATAAAA 47 188 1 AAAAACACCTCCCTGTATTTCGTATCCACCAGT 49 111 0 ******* * ** MAP Score: 6.47617 Motif 12 AACAGAGTGGGGAGTGAGAATTGA 2 48 1 TTCTGGCTGGGAGGGGAGGACTCGAACCTC 6 124 1 TAAATTTCTGGAGGATTTTATATGTCTCAA 7 105 0 CTTTTTTTTAGAGGGCACAAACCCCATGTT 7 166 0 GTTTCCTTTCGGGAGGAGAAACCTCCTCCC 8 11 1 ATAAATATGGGGAGGGAGGATACCCTCCCC 10 28 0 CGAAAACAAAACAGGGAGGAGAGTGG 10 64 1 TATTCTGAGGGGAGGTAAGATGTT 14 20 1 CAATGAGAAGGGAGGTTTGTCCC 15 69 1 TTTATGTCGTGGAGGTAGAAGAGCC 17 285 1 ACAAAGTATGGGAGGGACGAAAGTCCCTCC 18 18 0 AGGGGGGATCGGGGGGATGAGGGACACGCA 18 67 1 CTTGAAAAAGGAGGGGTGAA 18 173 1 CGGGAAACCAGGAGGTAGAAAGG 19 100 1 AACACACCAGGGAGGGAAAAAC 20 15 1 AGGATACGAAGCGTGGAAAAAAACCGGCTG 24 258 1 TTAAAGGTTTGGGGTTAGAATCAAAAACGA 25 96 1 TATATATAATGGAGGGCCGAGGTGGCGGAA 30 123 1 TATCACATCAGGAGGGAAAAACCT 30 254 1 AAGGGGGATAGGGGGGTCAACTTTCATGCT 31 194 0 CCAAGGCCGTGGGGGGTGTATCTCAAGGGG 31 218 0 CACGGCCTTGGCGGGCTCGAAAGAGCCCGC 31 237 1 ACCGAAACCGGGAGGGTGAAGCC 32 21 1 ATCCTCTTCAGGGGATTGGAAGGAGGTCGA 33 36 1 TCTGAACTTTGGAGGGATTAATA 33 287 1 TAGTGTGGTGGGGGTGTTGAAACT 34 4 0 CGTCGCCAGAGAGGTGAGAATATGAAATTA 34 212 1 TTATCATTGTGGAGTGATAAAATTGATAAC 35 27 0 ACTAAAAGTGGGAGGGATAAATT 38 3 0 CGAGCCCGAAGAGGGGAAGATTGGGAGGAG 46 87 0 AGAACACCGAGGGGTGATGAT 46 212 1 AAGAAAGGGTGCAGGTTGGAAGAAG 47 285 1 ********** MAP Score: 3.14511 Motif 13 TTCAGAACCATAAAAGGAGAGATGCGAG 1 42 1 CCACAAAAACAGAGTGGGGAGTGAGAATTGA 2 41 1 TAATACGGTATAATCGGAGAGCACGATGAAT 5 121 1 CTGTGGATAAAGAAAAAGGGGATGCATTGCA 6 87 1 CCTCCCAGCCAGAAAGGGGATGCAATGCATC 6 107 0 CCTTTCTGGCTGGGAGGGGAGGACTCGAACC 6 121 1 TTATACATCAAGAACAGGGATAGTTCAAGGG 6 214 1 CATATTTACCAAAAGGAGGTGTTTTT 7 284 1 AGGCCGAAAAAAGGGGAGGAGGTTTCTCCTC 8 23 0 CTCTAACTATGGAAGAGGAGGAGAAAGC 9 10 1 ATAAATATGGGGAGGGAGGATACCCTCCCCG 10 27 0 CCACGAAAACAAAACAGGGAGGAGAGTGG 10 61 1 AATCTTATGTTAGGAGGGGAGAGTT 11 231 1 AAATTTATTCTGAGGGGAGGTAAGATGTT 14 15 1 GAATTTCCTTTGGACGGGATGGTATAATCAC 15 19 1 CTGTGATCAATGAGAAGGGAGGTTTGTCCC 15 62 1 GCTCCAGACAAAAAAGAAGGGGAAATTTCCC 17 241 1 ATAAAGAAAAAGAAGAAGGGGAAATTTCCCC 17 259 0 GGGTCAGGGGGGATCGGGGGGATGAGGGACA 18 62 1 AAACCCTTGAAAAAGGAGGGGTGAA 18 168 1 ATGTGAATAGAGGAGGGGGATTTAC 21 4 0 GTTTTAAGGTTGAAGAGGGAG 23 40 1 TATTCAGAAGAGAACGAAGAGGTGATAGCAG 24 151 1 AAAAACCGGCTGGAGGAGGAGAAA 24 276 1 CTCGAAGTCAAAAGTGAGGAG 26 0 0 ACTTTCAAGTAAAGAAGAGAGTTC 28 3 0 AATTAGTGATAAAGGGAGGAGTTCGCA 29 20 1 TTAGCACTCAAAAGAAGGGAGTGCTAAATC 30 9 0 AAAGAATTCAAGAAGGAAGAGGGATTCTCGG 30 62 1 ATCTCAAGGGGGATAGGGGGGTCAACTTTCA 31 198 0 AATATCATATTAAGGAGGGATACTC 31 325 1 TTCAGGGGATTGGAAGGAGGTCGACTTCTTT 33 42 1 ATCTAACGTGTGGGAGGGGATCGGT 35 58 1 GTTCTCTTTCAGAACGAAGAGTCGGCTTAAC 37 120 1 TGATAAACTAAAAGTGGGAGGGATAAATT 38 8 0 TCTTGAAAAGAAAAAAAGGGGCGTTCAGCCC 39 16 1 ATACCATAATGAAAAAAGGGGCTGAACGCCC 39 34 0 ACCACACGAAAGGGAGGAAAGAGGAACGGA 40 9 0 TGGTAAGATTTGAAACGGAAGCAACGGACAA 40 36 1 TAAGATCAGCGAAAGGAGGATGGGAG 44 57 1 CGAAGTGTTATGATTGAGGAGTACCATCTTT 46 29 0 GAAGAACAAGAAAGAGAAGAGTTCTTCAAGA 47 242 1 **** ****** MAP Score: 0.91155 Motif 14 CCCCTTTCTGGCTGGGAGGGGAGGACTCGA 6 119 1 GATAGTTCAAGGGGTGGTGTTTCACGTTTT 6 232 1 AACTATGGAAGAGGAGGAGAAAGC 9 14 1 AAATAAATATGGGGAGGGAGGATACCCTCC 10 30 0 CTTATGTTAGGAGGGGAGAGTT 11 234 1 AATTTATTCTGAGGGGAGGTAAGATGTT 14 16 1 TCGTTCTAACGAGGTGATGGG 16 19 1 CTTGGTGCGAGAGGTGGGACTTGAACCCAC 17 133 0 TCTTTATGTCGTGGAGGTAGAAGAGCC 17 283 1 GGATCGGGGGGATGAGGGACACGCAAGTTA 18 72 1 TATGTGAATAGAGGAGGGGGATTTAC 21 6 0 AGAGAACGAAGAGGTGATAGCAGTTATCTC 24 159 1 AAACCGGCTGGAGGAGGAGAAA 24 278 1 AATCAAAAACGAGGTGATGCCTC 25 114 1 TTTTGACTTCGAGGTGATCGT 26 18 1 ATGGAGGGCCGAGGTGGCGGAATGGCAGAC 30 131 1 TTTCCCTCCTGATGTGATACAAAATAAAGG 30 243 0 AATGTGGCCCGATGTGATAGAATTTACACA 31 292 1 AGATCATAGTGTGGTGGGGGTGTTGAAACT 34 10 0 CGTCGCCAGAGAGGTGAGAATATGAAATTA 34 212 1 AGATTCTCCGGAGAAGGAACGCTTTTCCCC 34 349 0 ACCAGCATGGGAGGTGAAAAC 34 468 1 TAACTGCAAGGAGGTGAAAAT 35 1 0 TAACGTGTGGGAGGGGATCGGT 35 61 1 TGGAAACTAAGAAGTGGTAAAATCCTGATG 37 190 1 GTAAAATCCTGATGTGGAGGTGTCTCTT 37 206 1 CGAGCCCGAAGAGGGGAAGATTGGGAGGAG 46 87 0 AGAACACCGAGGGGTGATGAT 46 212 1 TCTGGAGAACGTGGTGATCCCCCAGCTCAA 47 181 1 ********** MAP Score: 0.561794