AlignACE 3.0 10/20/99 AlignACE2 -i TM/TM_operons011_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944252093 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TM0129 60 carboxypeptidase G2, putative #1 TM0140 40 indole-3-glycerol phosphate synthase #2 TM0143 93 response regulator #3 TM0335 26 dihydroorotase #4 TM0337 278 conserved hypothetical protein #5 TM0338 184 hypothetical protein #6 TM0539 45 tryptophan synthase, beta subunit #7 TM0558 211 carbamoyl-phosphate synthetase, small subunit #8 TM0711 51 hypothetical protein #9 TM0713 44 hypothetical protein #10 TM0717 290 propionyl-CoA carboxylase, gamma subunit #11 TM1095 300 adenylosuccinate lyase #12 TM1632 62 conserved hypothetical protein #13 TM1642 35 aspartate carbamoyltransferase, catalytic and regulatory chains #14 TM1820 55 GMP synthase Motif 1 AAAGGAATTCGGAGGGAAAAGT 3 14 1 GATCTGTTTGGGAGGGAAAAAG 11 288 1 ACCGGCTGGAGGAGGAGAAA 10 280 1 ATATTTTGCAGGAGGTGACAAAAT 5 4 0 TATCACTGAAGGAGGGGGAAT 6 34 1 TAATGTAGTTGGAGGGATAAAA 0 48 1 ATATCTGAAAGGAGGTGAAGAAGATGTTAG 4 70 1 TTTCGTTCGGTGGAGACAGCGGTGCTTA 9 8 1 CTCGTTTCACGGCGGGAAAAGGGGCAACGA 5 92 0 AGAAAGGGAAGGAGGTGCAAC 7 200 1 AGAGATTTTTGGTGGAAAAACACAGGAAAA 4 125 1 AATCCCTCCGGAAGGAGACACAACGA 12 6 0 AAAGAAACCGGGAGGGATCGAG 14 43 1 ACAACACTGTGGAGGAACAGAAA 12 49 1 ACGTGTTGTGGGAAGAAACACAGTATCACC 4 252 0 TCGAATATTTGAAAGGGACAGATTACGATC 11 64 1 CCCTCGAGGACGAGGAGAAAGATCAGACTC 11 32 0 ********** MAP Score: 25.1972 Motif 2 CCCTCCTCACCGGGGTTTTCTTAAAGAATAGT 0 15 1 TCGTTTTTCTCTGCTTTTTTTCACAGAAACTA 10 227 0 TCATGTGAGTCTGATCTTTCTCCTCGTCCTCG 11 26 1 CGGTTCAACTCGTTTTTTTCTCTGATAATATA 2 37 1 AAGGACCTCCCGTCTTTTTCTTTACTTTGAAT 7 149 0 CTCCTCCAGCCGGTTTTTTTCCACGCTTCGTA 10 262 0 TCAACAACAGCGGGTTTCTCTTTTCCCGAGAA 10 103 0 GGTATGTTCACGGTTTTTTTCTTTGCGAAACT 11 141 0 GTTATCTCAGCGGTGCTTTCGCAGGTAATCGA 10 181 1 TTCTGTTTTCCTGTGTTTTTCCACCAAAAATC 4 128 0 CGCCGTGAAACGAGATTTTCTTTACATATAAT 5 108 1 GTTGCACCTCCTTCCCTTTCTCAGAGATTATA 7 189 0 TAGGGTGATACTGTGTTTCTTCCCACAACACG 4 249 1 CGGCCGTTCACGGGGTGTTTTCAAGGATGTTT 8 12 1 GGCTTCTTATCTTGTTTTTCCTGTTGTTGCGC 11 242 1 GTGCGATATTTTTTTGTCTGAAGGG 13 3 1 ACATGAAACAGGGTCTTTTCTC 11 0 0 CACCCTATCCCTGAGTTTTCATAATAATATAT 2 64 0 AATCGCTTTTCTGGTTTCTCGTTGCGATGGCG 11 178 1 GTTTCTGGTGCTGTCCTTCTTTCCTCTGATCG 11 104 1 TTCTGAATACCTGGTCTTCTTTTCTTCAACAA 10 128 0 GCTATCACCTCTTCGTTCTCTTCTGAATACCT 10 148 0 GGCCTCGAAACGAGGCTTTTTTTGTTTTAAAA 4 213 1 GGGTACGGCACTTACTTTTTGTTATTCTTCTT 4 159 0 TGTTATTCTTCTTTCTGTTTTCCTGTGTTTTT 4 140 0 TTAAAGTCCTGTGACTTTCCTTTAATTCAAAG 7 125 1 ATTTCTTATTCTGTATTTGTTCTCCATTGTTT 10 63 1 *** ******* MAP Score: 23.0955 Motif 3 CTATTCTTTAAGAAAACCCCGGTGAGGAGGGA 0 14 0 AAGATATTCTGGAGATAGACGGCGAGAAC 1 21 1 ATATTATCAGAGAAAAAAACGAGTTGAACCGA 2 36 0 GATTTTTGGTGGAAAAACACAGGAAAACAGAA 4 128 1 AAAAACACAGGAAAACAGAAAGAAGAATAACA 4 140 1 CGTGTTGTGGGAAGAAACACAGTATCACCCTA 4 249 0 TTGAATTAAAGGAAAGTCACAGGACTTTAATT 7 123 0 TTCAAAGTAAAGAAAAAGACGGGAGGTCCTTT 7 150 1 AAACATCCTTGAAAACACCCCGTGAACGGCCG 8 12 0 ATACAGAATAAGAAATACAAAGAACACTGTCA 10 47 0 TCGGGAAAAGAGAAACCCGCTGTTGTTGAAGA 10 106 1 CGCTGTTGTTGAAGAAAAGAAGACCAGGTATT 10 123 1 TAGTTTCTGTGAAAAAAAGCAGAGAAAAACGA 10 227 1 AAAAAAGCAGAGAAAAACGAGGATACGAAGCG 10 239 1 TACGAAGCGTGGAAAAAAACCGGCTGGAGGAG 10 262 1 GAGAAAAGACCCTGTTTCATGTGA 11 2 1 AGTTTCGCAAAGAAAAAAACCGTGAACATACC 11 141 1 CGCAACAACAGGAAAAACAAGATAAGAAGCCG 11 241 0 CCCTCCGGAAGGAGACACAACGA 12 1 0 ***** **** * MAP Score: 21.8279 Motif 4 TTTTTCCACGCTTCGTATCCTCGTTTTTCTCT 10 247 0 CTGGTGCTGTCCTTCTTTCCTCTGATCGCCAC 11 108 1 TTTCTGTTCCTCCACAGTGTTGTAC 12 47 0 GTTGCACCTCCTTCCCTTTCTCAGAGATTATA 7 189 0 CGGTTCAACTCGTTTTTTTCTCTGATAATATA 2 37 1 AATACCTGGTCTTCTTTTCTTCAACAACAGCG 10 123 0 AGATAAGCACCGCTGTCTCCACCGAACGAAA 9 9 0 TCTGATCTTTCTCCTCGTCCTCGAGGGGTTCG 11 35 1 TGTTATTCTTCTTTCTGTTTTCCTGTGTTTTT 4 140 0 TAGGGTGATACTGTGTTTCTTCCCACAACACG 4 249 1 CCTCCAGCCGGTTTTTTTCCACGCTTCGTATC 10 260 0 GACCTCCCGTCTTTTTCTTTACTTTGAATTAA 7 146 0 GTTCTCGCCGTCTATCTCCAGAATATCTT 1 21 0 CTGTTTTCCTGTGTTTTTCCACCAAAAATCTC 4 126 0 TGATCACCATCTTTCTGTTCGGAATAGTGACA 10 20 1 CTGCTATCACCTCTTCGTTCTCTTCTGAATAC 10 150 0 TCGTTGTGTCTCCTTCCGGAGGG 12 1 1 TCGTTTTTCTCTGCTTTTTTTCACAGAAACTA 10 227 0 AGTGCCGTACCCCTGCGTCCCCATTTTTTAAC 4 179 1 GTTATCTCAGCGGTGCTTTCGCAGGTAATCGA 10 181 1 ACATGAAACAGGGTCTTTTCTC 11 0 0 ATTTTCGTTGCCCCTTTTCCCGCCGTGAAACG 5 88 1 TATCCAACGGCTTCTTATCTTGTTTTTCCTGT 11 234 1 CTGTTGTTGCGCTCGTGTTCACGAGAGATCTG 11 262 1 TTTCTCCTCCTCCAGCCGGTTTTTT 10 275 0 ACAACAGCGGGTTTCTCTTTTCCCGAGAAAAA 10 100 0 TCCAGAATATCTTTCTTTTTGGCT 1 2 0 TCAGTTCTAACATCTTCTTCACCTCCTTTCAG 4 74 0 CGATCCCTCCCGGTTTCTTTTGATACTATTAA 14 31 0 ATTCCCCCTCCTTCAGTGATATAATC 6 29 0 GGAGACAGCGGTGCTTATCTGGGAGTCATAGG 9 21 1 ****** *** * MAP Score: 20.8344 Motif 5 CTGTCATCGGTTCAACTCGTTTTTTTCTCTGATAATATA 2 30 1 CTTCTTTCTGTTTTCCTGTGTTTTTCCACCAAAAATCTC 4 126 0 ATACATAGGGTGATACTGTGTTTCTTCCCACAACACGTG 4 244 1 CTGTAAGGATTTTCGTTGCCCCTTTTCCCGCCGTGAAAC 5 80 1 CCTCCTTCCCTTTCTCAGAGATTATACCCGCTGAAAGGA 7 176 0 TTTGTATTTCTTATTCTGTATTTGTTCTCCATTGTTTTG 10 58 1 TTGTTCTCCATTGTTTTGAAGTTTTTCTCGGGAAAAGAG 10 79 1 TATCCTCGTTTTTCTCTGCTTTTTTTCACAGAAACTATT 10 225 0 CAGACTCACATGAAACAGGGTCTTTTCTC 11 0 0 CTGTTTCATGTGAGTCTGATCTTTCTCCTCGTCCTCGAG 11 21 1 CGAGCCGAGTTGTTTCTGGTGCTGTCCTTCTTTCCTCTG 11 93 1 CTTATCTTGTTTTTCCTGTTGTTGCGCTCGTGTTCACGA 11 247 1 ** *** ** * * * MAP Score: 20.4386 Motif 6 TCGTTGTGTCTCCTTCCGGAGGGATTCAA 12 8 1 TTTCTGTTCCTCCACAGTGTTGTAC 12 47 0 TTTCTCCTCCTCCAGCCGGTTTTTT 10 275 0 GTGAGTCTGATCTTTCTCCTCGTCCTCGAGG 11 30 1 ATCTTCTTCACCTCCTTTCAGATATCATCAT 4 64 0 TTTTTGTTATTCTTCTTTCTGTTTTCCTGTG 4 145 0 ACAGCGGGTTTCTCTTTTCCCGAGAAAAACT 10 98 0 TTGCACCTCCTTCCCTTTCTCAGAGATTATA 7 189 0 TGTTTTCCTGTGTTTTTCCACCAAAAATCTC 4 126 0 TGGTGCTGTCCTTCTTTCCTCTGATCGCCAC 11 109 1 CTCCAGCCGGTTTTTTTCCACGCTTCGTATC 10 260 0 ATTCCCCCTCCTTCAGTGATATAATC 6 29 0 ATTTTCGTTGCCCCTTTTCCCGCCGTGAAAC 5 88 1 TCAGATATCATCATCCTTCGCCTGTAAATGT 4 47 0 CTTCTTATCTTGTTTTTCCTGTTGTTGCGCT 11 244 1 TCCCTCCGAATTCCTTTCCTG 3 0 0 AACATCCCTCCTCACCGGGGTTT 0 2 1 TTAATGCTCGCTACCTTCCACAACGCCATCG 11 202 0 ACTTTTCCCTCCGAATTCCTTTCC 3 12 0 CTTTTTCCCTCCCAAACAGATCTC 11 286 0 GGTGATACTGTGTTTCTTCCCACAACACGTG 4 252 1 TTTTTCTCTGCTTTTTTTCACAGAAACTATT 10 225 0 GGCTTAAACATCACCTTCCAAACCAATCAAA 7 23 0 GTAATGATCACCATCTTTCTGTTCGGAATAG 10 16 1 CTCCCTCTTCAACCTTAAAACA 8 39 0 TTTTATCCCTCCAACTACATTATA 0 46 0 CTTCGTATCCTCGTTTTTCTCTGCTTTTTTT 10 238 0 ACCTCTCAAATCGCTTTTCTGGTTTCTCGTT 11 170 1 ACCTGGTCTTCTTTTCTTCAACAACAGCGGG 10 121 0 ********* * MAP Score: 19.5003 Motif 7 CAATCTCCACCCTATCCCTGAGTTTTCATAAT 2 71 0 TTTCGTTGCCCCTTTTCCCGCCGTGAAACGAGA 5 90 1 ATCTCTATGACCACATCCAGCGGTATCAGTTCT 4 98 0 TTTCTCCTCCTCCAGCCGGTTTTTTTCC 10 272 0 ATTCCCCCTCCTTCAGTGATATAATC 6 29 0 TGATCTTTCTCCTCGTCCTCGAGGGGTTCGAAT 11 37 1 AAAGTAAGTGCCGTACCCCTGCGTCCCCATTTT 4 173 1 AACATCCCTCCTCACCGGGGTTTTCTTAA 0 6 1 TGGTGCTGTCCTTCTTTCCTCTGATCGCCACCA 11 109 1 ACTTTTCCCTCCGAATTCCTTTC 3 13 0 TCGTTGTGTCTCCTTCCGGAGGGATTCAATA 12 8 1 ATTCTTCTTTCTGTTTTCCTGTGTTTTTCCACC 4 135 0 CAGCGGGTTTCTCTTTTCCCGAGAAAAACTTCA 10 95 0 GAGAAAAGACCCTGTTTCATGTGAGTCTGATCT 11 10 1 GTTGTTGCGCTCGTGTTCACGAGAGATCTGTTT 11 264 1 ** * ****** * MAP Score: 13.8959 Motif 8 CATCCCTCCTCACCGGGGTTTTCTTAAAGAA 0 12 1 ATTTTTAATACACCGGTGGTACACTCTTATG 5 157 1 GAGGTCCTTTCAGCGGGTATAATCTCTGAGA 7 172 1 ACCGGCCGTTCACGGGGTGTTTTCAAGGATG 8 10 1 TCGGTGGAGACAGCGGTGCTTATCTGGGAGT 9 16 1 TCTTCAACAACAGCGGGTTTCTCTTTTCCCG 10 107 0 GCAGTTATCTCAGCGGTGCTTTCGCAGGTAA 10 178 1 TCTCCTCCTCCAGCCGGTTTTTTTCCACGCT 10 267 0 ******** ** MAP Score: 11.0141 Motif 9 GAAAACCCCGGTGAGGAGGGATGTT 0 5 0 GAAAGGAATTCGGAGGGAAAAGT 3 13 1 ATGATGATATCTGAAAGGAGGTGAAGAAGA 4 64 1 CTGAAAGGAGGTGAAGAAGATGTTAGAACT 4 74 1 CACGTGTTGTGGGAAGAAACACAGTATCAC 4 253 0 CTAAAATATTTTGCAGGAGGTGACAAAAT 5 9 0 TTTCACGGCGGGAAAAGGGGCAACGAAAAT 5 88 0 GATTATATCACTGAAGGAGGGGGAAT 6 29 1 ATTATACCCGCTGAAAGGACCTCCCGTCTT 7 165 0 GGTATAATCTCTGAGAAAGGGAAGGAGGTG 7 187 1 TGTTTTAAGGTTGAAGAGGGAG 8 39 1 AGTTTTTCTCGGGAAAAGAGAAACCCGCTG 10 98 1 CCCGCTGTTGTTGAAGAAAAGAAGACCAGG 10 121 1 AATAGTTTCTGTGAAAAAAAGCAGAGAAAA 10 225 1 AAAAAACCGGCTGGAGGAGGAGAAA 10 275 1 GTTCGAATATTTGAAAGGGACAGATTACGA 11 62 1 GGCGATCAGAGGAAAGAAGGACAGCACCAG 11 108 0 AGATCTGTTTGGGAGGGAAAAAG 11 287 1 TGAATCCCTCCGGAAGGAGACACAACGA 12 8 0 TTGTACAACACTGTGGAGGAACAGAAA 12 45 1 ATTTTTTTGTCTGAAGGGGGTATCGTGA 13 17 1 ********** MAP Score: 5.54113 Motif 10 ATCCCTCCTCACCGGGGTTTTCTTAAAGAATA 0 13 1 ATCGGTTCAACTCGTTTTTTTCTCTGATAATA 2 35 1 TTTCTGTTTTCCTGTGTTTTTCCACCAAAAAT 4 129 0 GGCCTCGAAACGAGGCTTTTTTTGTTTTAAAA 4 213 1 ATAGGGTGATACTGTGTTTCTTCCCACAACAC 4 248 1 GAAAGGACCTCCCGTCTTTTTCTTTACTTTGA 7 151 0 CGGCCGTTCACGGGGTGTTTTCAAGGATGTTT 8 12 1 CGGAATAGTGACAGTGTTCTTTGTATTTCTTA 10 39 1 TCTTCAACAACAGCGGGTTTCTCTTTTCCCGA 10 106 0 CTTCTGAATACCTGGTCTTCTTTTCTTCAACA 10 129 0 CCTCGTTTTTCTCTGCTTTTTTTCACAGAAAC 10 229 0 CACGCTTCGTATCCTCGTTTTTCTCTGCTTTT 10 241 0 CCTCCTCCAGCCGGTTTTTTTCCACGCTTCGT 10 263 0 TCACATGAAACAGGGTCTTTTCTC 11 2 0 TCTGATCTTTCTCCTCGTCCTCGAGGGGTTCG 11 35 1 ACGATCGAGCCGAGTTGTTTCTGGTGCTGTCC 11 88 1 GAGGTATGTTCACGGTTTTTTTCTTTGCGAAA 11 143 0 CTCGATCCCTCCCGGTTTCTTTTGATACTATT 14 33 0 * ********* MAP Score: 3.32898