AlignACE 3.0 10/20/99 AlignACE2 -i TM/TM_operons014_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944252199 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TM0132 300 flagellin, putative #1 TM0379 300 NADH oxidase #2 TM0381 300 dihydrolipoamide dehydrogenase #3 TM0398 300 conserved hypothetical protein #4 TM0755 111 conserved hypothetical protein #5 TM0757 107 hypothetical protein #6 TM0758 159 flagellin #7 TM0863 82 ribosomal protein L9 #8 TM0868 29 glutaredoxin-related protein #9 TM0939 65 aspartate 1-decarboxylase #10 TM0942 82 hypothetical protein #11 TM0943 183 glutamine synthetase #12 TM1058 99 glutamate synthase-related protein #13 TM1420 255 hypothetical protein #14 TM1428 108 methyl-accepting chemotaxis protein #15 TM1429 209 glycerol uptake facilitator protein #16 TM1430 31 glycerol kinase #17 TM1432 80 conserved hypothetical protein #18 TM1632 62 conserved hypothetical protein Motif 1 ACTCGGTAAACCTCTTCGGAGATGGGCATATCTA 1 87 0 GATCTCTCATCGACTGAAGAGGTGGTTTCCCTTC 1 128 0 TGAAAAATTTCTCTTTTGGAGGGGAAAAC 1 281 1 AAGTGGCAGTCTGTATGGGCGGTGGCCCAGCACT 2 179 1 GAAAACCCCTCCCGAAGGGAGGGGTGATGTTATT 2 260 0 CGGGAGGGGTTTTCTCAGGAGGGGACGAAC 2 280 1 ACTCTGGATCCGCTGGTGGAGGTTCGAGTCCTCC 3 48 1 CATCCCCTTTCTGGCTGGGAGGGGAGGACTCGAA 3 70 0 CATGCTTTTCTCCTTCAGGAGGTGAATGCC 3 280 1 GGAATCCCTAATTTAATGGAGGTGTCTCTGT 4 90 1 AGTAAGAATACTCACACGGAGGTGAGTAGGTC 6 137 1 ATAAGGAAAAATTTTCAGGAGGTGATTTGTT 7 61 1 TTTGGTAGAATTATATCGGAGGTGAAAAA 8 10 1 CATGATAAAATCTTTCGGGAGGGTGAAACG 9 45 1 TTTCTGTCCCCGGGGACAGAGGGGTTTTTTCTTT 11 56 0 ATTTTTTATGTTCAAGAGGAGGTGTTGTT 11 164 1 ATAAATTCCATTTGGGGGGGAACGGTAGTG 12 6 1 CAAAAACATTTCAGCAGGGAGGTTTCAGAC 14 88 1 CTAATCTTATCGCAAAAGGAGGGGTCTTC 16 12 1 TGGCTCTTTTTGTTTAAGGAGGTGCAAACG 17 60 1 TCGTTGTGTCTCCTTCCGGAGGGATTCAATATGT 18 10 1 *** ******* MAP Score: 32.5775 Motif 2 CCTAAATCCCCCCTTTCCATAATGAA 0 284 0 CAGGGGGCATACGCCCCCTTTTATTTTTGTGC 5 28 1 GAAGACCCCTCCTTTTGCGATAAG 16 17 0 ACTTCACACCTCCTCTTTTCAAGATTA 7 5 1 AACAACACCTCCTCTTGAACATAAAA 11 167 0 TGGAGGTTCGAGTCCTCCCCTCCCAGCCAGAA 3 64 1 GTTCGTCCCCTCCTGAGAAAACCCC 2 285 0 AAGGGGCTGAACGCCCCTTTTTTTCTTTTCAA 14 18 0 CAAAAAGAAAAAACCCCTCTGTCCCCGGGGAC 11 53 1 AAATAACATCACCCCTCCCTTCGGGAGGGGTT 2 259 1 TTTCCCAATCCTCCTTGTATGTAAATAT 15 191 0 AGGGGATGCAATGCATCCCCTTTTTCTTTATC 3 96 1 AAGGGGCGTTCAGCCCCTTTTTTCATTATGGT 14 31 1 GTCTGAAACCTCCCTGCTGAAATGTTT 14 91 0 TTCCTGTCATAAGCCACCCTTTCTGGAAGAAA 10 56 0 GGCATTCACCTCCTGAAGGAGAAAA 3 285 0 AACAAATCACCTCCTGAAAATTTTTC 7 66 0 AATCCAGCCTCCCTCTCGGATTATCT 6 4 1 TTACGAAGGGAAACCACCTCTTCAGTCGATGA 1 124 1 ACGACTCGGTAAACCTCTTCGGAGATGGGCAT 1 92 0 GACCTACTCACCTCCGTGTGAGTATTC 6 142 0 AAAATCCCTAAAGCCTCTTCCGATTAAAGATA 6 78 1 GGATGCATTGCATCCCCTTTCTGGCTGGGAGG 3 82 0 AGGGACAACATCCCTTGAGCGGTTGAA 12 82 0 AAAGAGCCATACCCCACTCTTGTGGGATATGG 17 37 0 AGAGAAAAAGAGACCCCCCAGTGTGTATCCGT 15 135 1 AAATCAAAAACAACAACCTTTTCTGTCCCCGG 11 77 0 * ********* MAP Score: 29.4484 Motif 3 AGCCAAAGAAAACAAAATAGATATGCCCATCTCCGA 1 70 1 GAAAGCACTCGACACAAAAACGAAGGAACTCATATC 2 40 1 GGTCCCGCATGCCAGACGATACACGGTTCACATCTC 2 97 0 AGAAATCCTCGACACAATCAAAGTGGCAGTCTGTAT 2 159 1 TTGGTCTGTGGATAAAGAAAAAGGGGATGCATTGCA 3 102 0 TCCTTTGATTGAGAGAACACATATGGTATAAATGTT 3 225 1 ATATTTTTGCACAAAAATAAAAGGGGGCGTATGCCC 5 32 0 TTATTTTTGTGCAAAAATATATGAGGAAGGAAAGAA 5 48 1 AATCAAGCATGATAGAATAGATAAGGAAAAATTTTC 7 41 1 TTCCATATCAAAAACAAAAGCTAAGGAGGTGAAACA 13 11 0 GTAAAAACGTGATATAATAGAAACGGCTCTTACATT 13 70 0 AAACGTCTTGAAAAGAAAAAAAGGGGCGTTCAGCCC 14 11 1 TAACTATATTGACATAAAACAAAAGGTTTGTTATAA 15 58 1 TCTTGAAGGAGAGAGAAAAGAGAGAGCCATATCCCA 17 11 1 ** * ** * * * ** MAP Score: 15.9428 Motif 4 TTTGCAGCGTCCCTATCATGATGCGCTCCACTCTTTG 0 24 1 TTCACCACGATCTTTCCAGTTTGGCTTTCGCTGACAA 0 170 1 TCTTTACTATTCTTATCACGTAGTTTTCTTTGCACGT 0 237 1 CACGTAGTTTTCTTTGCACGTTCTGATAAAATTCATT 0 253 1 CTAAATCCCCCCTTTCCATAATGAATTTTATCAGAAC 0 272 0 AATTTCTCTACCTTTGCAGTTGAAATTTAATCCGAAA 1 217 1 GAAACCGCTTTCCTTACATTTTCTGCTATAATCACTT 4 52 1 TCACACCTCCTCTTTTCAAGATTATATCAATCAAGCA 7 13 1 TCATAACATATCTTTGCATGATAAAATCTTTCGGGAG 9 29 1 TACATTACACTCTTACCATGTTACTTTCCTTCCATAT 13 39 0 AAATCGTGAACCTTTTCACGTTATATTTTTCACTATT 13 218 0 CCCCTTTTTTTCTTTTCAAGACGTTTT 14 0 0 ***** ** ** * MAP Score: 11.688 Motif 5 GTATCTGCTTGCTTTTATCACTTTGACCCCAC 0 111 1 GCATTGCATCCCCTTTCTGGCTGGGAGGGGAG 3 78 0 GCAATGCATCCCCTTTTTCTTTATCCACAGAC 3 103 1 TTATATTCATGCTTTTCTCCTTCAGGAGGTGA 3 273 1 GCATACGCCCCCTTTTATTTTTGTGCAAAAAT 5 34 1 TCTTTTTCTCATTTTTCTGGTGA 10 1 1 GGGACAGAGGGGTTTTTTCTTTTTGCATCTTT 11 46 0 CACCTCCTTAGCTTTTGTTTTTGATATGGAAG 13 16 1 AAATCGTGAACCTTTTCACGTTATATTTTTCA 13 223 0 CTGAACGCCCCTTTTTTTCTTTTCAAGACGTT 14 12 0 GCGTTCAGCCCCTTTTTTCATTATGGTATAAT 14 36 1 ACTGGGGGGTCTCTTTTTCTCTAAACCCCAAT 15 125 0 TATGGCTCTCTCTTTTCTCTCTCCTTCAAGAA 17 10 0 TGGGGTATGGCTCTTTTTGTTTAAGGAGGTGC 17 53 1 ****** ** ** MAP Score: 10.5881 Motif 6 CAACATTTAAGGCAAAGCGCTGTGGGGTCA 0 134 0 AAAGATCGTGGTGAAAGATCTCAACATTTA 0 155 0 AAAGCCAAACTGGAAAGATCGTGGTGAAAG 0 168 0 CCTTGAAAGCTCAAACCAGGTT 1 2 1 AGCTTTCACAGTGAAGGCACCTTCTACAAC 1 29 0 TGCCTTCACTGTGAAAGCTGTGATGAAGAT 1 40 1 TAAACGACTCGGTAAACCTCTTCGGAGATG 1 97 0 CGTTTACGAAGGGAAACCACCTCTTCAGTC 1 121 1 GTTCACGCGGCTGAAAGCCCGAAAGCACTC 2 20 1 GTTCCAGTTTTTGAAACCGCTTTCCTTACA 4 40 1 TTAAAGATAATGGAAAGCCCGGCGCCGGGA 6 101 1 GAACGGTAGTGGGAAACCTCAGAAGGCCAA 12 29 1 GAAAACTATTGGTAAAGCACTTGAAATATA 13 111 0 GAGAAGTCAAGGGAATGCTCTATGTTGTTA 13 182 0 GTCTGAAACCTCCCTGCTGAAA 14 96 0 ********** MAP Score: 10.5349 Motif 7 CCTAAATCCCCCCTTTCCATAATGAATT 0 282 0 AAAATAGATATGCCCATCTCCGAAGAGGTTT 1 83 1 GTTTTCCCCTCCAAAAGAGAAA 1 288 0 GTTCGTCCCCTCCTGAGAAAACC 2 287 0 GAGGTTCGAGTCCTCCCCTCCCAGCCAGAAA 3 66 1 GGATGCATTGCATCCCCTTTCTGGCTGGGAG 3 83 0 TTTATATTCATGCTTTTCTCCTTCAGGAGGT 3 272 1 GGCATTCACCTCCTGAAGGAGAA 3 287 0 TATGTCCTGTTCTTTCCTTCCTCATATATTT 5 62 0 CGGTTGTATATTTCTATGTCCTGTTCTTTCC 5 76 0 AGTATTCTTACTTCCCTGTCCCGGCGCCGGG 6 118 0 GACCTACTCACCTCCGTGTGAGTAT 6 144 0 ACTTCACACCTCCTCTTTTCAAGATTATAT 7 9 1 TTTTTCACCTCCGATATAATTC 8 17 0 CGTTTCACCCTCCCGAAAGATTT 9 52 0 AAAGAAAAAACCCCTCTGTCCCCGGGGACAG 11 56 1 AAACAACAACCTTTTCTGTCCCCGGGGACAG 11 71 0 TTCCCACTACCGTTCCCCCCCAAATGGAATT 12 13 0 CTTACCATGTTACTTTCCTTCCATATCAAAA 13 34 0 AACGCCCCTTTTTTTCTTTTCAAGACGTTTT 14 10 0 GGCTCTCTCTTTTCTCTCTCCTTCAAGAA 17 8 0 TCGTTGTGTCTCCTTCCGGAGGGATTC 18 6 1 TTTCTGTTCCTCCACAGTGTTGT 18 49 0 * ********* MAP Score: 9.34564 Motif 8 GATAAAAGCAAGCAGATACTATCCCTCAAGTCAGCTA 0 93 0 CTTCGTAAACGACTCGGTAAACCTCTTCGGAGATGGG 1 95 0 GTCGTTTACGAAGGGAAACCACCTCTTCAGTCGATGA 1 119 1 TCGGAAAATAACATCACCCCTCCCTTCGGGAGGGGTT 2 254 1 GTTCGTCCCCTCCTGAGAAAACCCCTCCCGAAGGGAG 2 273 0 GCTGGTGGAGGTTCGAGTCCTCCCCTCCCAGCCAGAA 3 59 1 CAGAAAGGGGATGCAATGCATCCCCTTTTTCTTTATC 3 91 1 GTCAATCCAGGGGGCATACGCCCCCTTTTATTTTTGT 5 21 1 AATCCAGCCTCCCTCTCGGATTATCTG 6 0 1 TTAACATTAAAATCCCTAAAGCCTCTTCCGATTAAAG 6 70 1 ACTTCACACCTCCTCTTTTCAAGATTA 7 0 1 TAAAGATGCAAAAAGAAAAAACCCCTCTGTCCCCGGG 11 45 1 CGAAGCGACTGGAACGTTCAACCGCTCAAGGGATGTT 12 66 1 AAGAAAAAAAGGGGCGTTCAGCCCCTTTTTTCATTAT 14 23 1 * ** * ****** MAP Score: 6.39621 Motif 9 TCATGATGCGCTCCACTCTTTGGCTTCTTTA 0 39 1 CCTAAATCCCCCCTTTCCATAATGAATT 0 282 0 CGACTCGGTAAACCTCTTCGGAGATGGGCAT 1 92 0 AAAATAACATCACCCCTCCCTTCGGGAGGGG 2 258 1 CTCCTGAGAAAACCCCTCCCGAAGGGAGGGG 2 270 0 GTTCGTCCCCTCCTGAGAAAACCC 2 286 0 AGGTTCGAGTCCTCCCCTCCCAGCCAGAAAG 3 67 1 GATGCATTGCATCCCCTTTCTGGCTGGGAGG 3 82 0 GGATGCAATGCATCCCCTTTTTCTTTATCCA 3 99 1 TATATTCATGCTTTTCTCCTTCAGGAGGTGA 3 274 1 GGCATTCACCTCCTGAAGGAGAAA 3 286 0 TTTCTGCTATAATCACTTTGGAATCCCTAAT 4 71 1 AAGGGGGCGTATGCCCCCTGGATTGACGGTG 5 17 0 CAGGGGGCATACGCCCCCTTTTATTTTTGTG 5 28 1 AATCCAGCCTCCCTCTCGGATTATCTGG 6 7 1 AAATCCCTAAAGCCTCTTCCGATTAAAGATA 6 79 1 GACCTACTCACCTCCGTGTGAGTATT 6 143 0 ACTTCACACCTCCTCTTTTCAAGATTA 7 6 1 AACAAATCACCTCCTGAAAATTTTT 7 67 0 TCCTGTCATAAGCCACCCTTTCTGGAAGAAA 10 56 0 AAAAAGAAAAAACCCCTCTGTCCCCGGGGAC 11 54 1 AACAACACCTCCTCTTGAACATAAAAA 11 166 0 AGGGGCTGAACGCCCCTTTTTTTCTTTTCAA 14 18 0 AAGGGGCGTTCAGCCCCTTTTTTCATTATGG 14 31 1 GAAGACCCCTCCTTTTGCGATAAGATT 16 14 0 GGATATGGCTCTCTCTTTTCTCTCTCCTTCA 17 14 0 AAGAGCCATACCCCACTCTTGTGGGATATGG 17 37 0 ATACATATTGAATCCCTCCGGAAGGAGACAC 18 15 0 * ********* MAP Score: 3.35257 Motif 10 AAAATTCATTATGGAAAGGGGGGATTTAGG 0 280 1 ATGCCCATCTCCGAAGAGGTTTACCGAGTC 1 92 1 ACCCCTCCCGAAGGGAGGGGTGATGTTATT 2 260 0 CCCCTCCCTTCGGGAGGGGTTTTCTCAGGA 2 270 1 GAGGGGTTTTCTCAGGAGGGGACGAAC 2 283 1 CCCTTTCTGGCTGGGAGGGGAGGACTCGAA 3 70 0 CCCTCCCAGCCAGAAAGGGGATGCAATGCA 3 81 1 TCCAGATAATCCGAGAGGGAGGCTGGATT 6 9 0 AGAATACTCACACGGAGGTGAGTAGGTC 6 141 1 TAATCTTGAAAAGAGGAGGTGTGAAGT 7 7 0 TTCTTTCTTCCAGAAAGGGTGGCTTATGAC 10 53 1 TGGCTTATGACAGGAAAGGG 10 72 1 TGTCCCCGGGGACAGAGGGGTTTTTTCTTT 11 56 0 TCCCCGGGGACAGAAAAGGTTGTTGTTTTT 11 74 1 TTTTATGTTCAAGAGGAGGTGTTGTT 11 167 1 TCTTGAAAAGAAAAAAAGGGGCGTTCAGCC 14 16 1 AACATTTCAGCAGGGAGGTTTCAGAC 14 92 1 ATTGACATAAAACAAAAGGTTTGTTATAAT 15 65 1 AACGGATACACACTGGGGGGTCTCTTTTTC 15 138 0 TCTTATCGCAAAAGGAGGGGTCTTC 16 16 1 AGCCATATCCCACAAGAGTGGGGTATGGCT 17 35 1 ********** MAP Score: 2.80325 Motif 11 TTTATCACTTTGACCCCACAGCGCTTTGCCTTAAAT 0 124 1 CCTAAATCCCCCCTTTCCATAATGAATTTTA 0 279 0 TTGTAGAAGGTGCCTTCACTGTGAAAGCTGTGATGA 1 30 1 GTTTTCCCCTCCAAAAGAGAAATTTTTCAC 1 280 0 AAATAACATCACCCCTCCCTTCGGGAGGGGTTTTCT 2 259 1 CCGTTAGACGACCTCCCAACGGCCTTT 3 1 0 GTTCGAGTCCTCCCCTCCCAGCCAGAAAGGGGATGC 3 69 1 AATCCAGCCTCCCTCTCGGATTATCTGGAAA 6 5 1 GAAAGATTTTACCACCCATGTCGTTACAAAAATTTA 6 37 1 GACCTACTCACCTCCGTGTGAGTATTCTTACTT 6 136 0 CGTTTCACCCTCCCGAAAGATTTTATCATGCA 9 43 0 CACTACCGTTCCCCCCCAAATGGAATTTAT 12 4 0 ATGTTTCACCTCCTTAGCTTTTGTTTTTGAT 13 5 1 AGAGAAAAAGAGACCCCCCAGTGTGTATCCGTTTAT 15 135 1 GAAGACCCCTCCTTTTGCGATAAGATTAGC 16 11 0 TCGTTGTGTCTCCTTCCGGAGGGATTCAATATGTA 18 9 1 ******** * * MAP Score: 2.65814 Motif 12 ATCATGATGCGCTCCACTCTTTGGCTTCTT 0 38 1 CCTAAATCCCCCCTTTCCATAATGAATT 0 282 0 AAATAGATATGCCCATCTCCGAAGAGGTTT 1 84 1 CGTCTTTCAGGCTTCTTCTCATGAGATCTC 1 156 0 ATAACATCACCCCTCCCTTCGGGAGGGGTT 2 261 1 GTTCGTCCCCTCCTGAGAAAACCC 2 286 0 GAGGTTCGAGTCCTCCCCTCCCAGCCAGAA 3 66 1 ATGCATTGCATCCCCTTTCTGGCTGGGAGG 3 82 0 GGATGCAATGCATCCCCTTTTTCTTTATCC 3 99 1 GGGGGCATACGCCCCCTTTTATTTTTGTGC 5 30 1 AATCCAGCCTCCCTCTCGGATTATCT 6 6 1 ACTTCACACCTCCTCTTTTCAAGATTAT 7 8 1 CTGTCATAAGCCACCCTTTCTGGAAGAAAG 10 55 0 TCCCACTACCGTTCCCCCCCAAATGGAATT 12 13 0 TACCATGTTACTTTCCTTCCATATCAAAAA 13 33 0 GGGGCTGAACGCCCCTTTTTTTCTTTTCAA 14 18 0 GGGGCGTTCAGCCCCTTTTTTCATTATGGT 14 33 1 ACACTGGGGGGTCTCTTTTTCTCTAAACCC 15 129 0 GAAGACCCCTCCTTTTGCGATAAGAT 16 15 0 TCTCTCTTTTCTCTCTCCTTCAAGAA 17 6 0 TGGGATATGGCTCTCTCTTTTCTCTCTCCT 17 17 0 TCGTTGTGTCTCCTTCCGGAGGGATTC 18 7 1 ********** MAP Score: 1.55889 Motif 13 ATGCCCATCTCCGAAGAGGTTTACCGAGTCG 1 92 1 CTCTCATCGACTGAAGAGGTGGTTTCCCTTC 1 128 0 CGCAGAATACGTTCACGCGGCTG 2 2 1 GGCTGAAAGCCCGAAAGCACTCGACACAAAA 2 28 1 CCCCTCCCGAAGGGAGGGGTGATGTTATTTT 2 258 0 CCCCTCCCTTCGGGAGGGGTTTTCTCAGGAG 2 270 1 CTCGGATTATCTGGAAAGATTTTACCACCCA 6 24 1 TATCTTTAATCGGAAGAGGCTTTAGGGATTT 6 79 0 ATCTTGAAAAGAGGAGGTGTGAAGT 7 4 0 AAATCACCTCCTGAAAATTTTTCCTTATCTA 7 58 0 TTTCACCCTCCCGAAAGATTTTATCATGCAA 9 42 0 TTCTTTCTTCCAGAAAGGGTGGCTTATGACA 10 53 1 TCCCCGGGGACAGAAAAGGTTGTTGTTTTTG 11 74 1 TTATGTTCAAGAGGAGGTGTTGTT 11 169 1 AAAATATAACGTGAAAAGGTTCACGATTTGA 13 226 1 GTGTCTCCTTCCGGAGGGATTCAATATGTAT 18 15 1 * ********* MAP Score: 1.50795