AlignACE 3.0 10/20/99 AlignACE2 -i TM/TM_operons015_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944252225 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TM0013 161 conserved hypothetical protein #1 TM0015 90 pyruvate ferredoxin oxidoreductase, gamma subunit #2 TM0019 41 oxidoreductase, short chain dehydrogenase/reductase family #3 TM0132 300 flagellin, putative #4 TM0297 108 oxidoreductase, short chain dehydrogenase/reductase family #5 TM0324 300 conserved hypothetical protein #6 TM0411 161 transcriptional regulator, XylR-related #7 TM0433 246 pectate lyase #8 TM0434 89 alpha-glucosidase, putative #9 TM0436 55 alcohol dehydrogenase, zinc-containing #10 TM0475 73 pyrazinamidase/nicotinamidase-related protein #11 TM0476 34 hypothetical protein #12 TM0477 82 outer membrane protein alpha #13 TM0478 30 tyrosyl-tRNA synthetase #14 TM0481 300 conserved hypothetical protein #15 TM0662 33 acyl carrier protein #16 TM0666 163 serine acetyltransferase #17 TM0802 141 3-oxoacyl-(acyl carrier protein) synthase II #18 TM1171 89 transcriptional regulator, crp family #19 TM1551 76 conserved hypothetical protein #20 TM1554 35 hypothetical protein #21 TM1724 300 3-oxoacyl-(acyl carrier protein) reductase Motif 1 TGAAATATCCCTCCTCCTGTGTTAATAT 16 7 1 AATACCACCTCCTGACAAAAAAA 17 128 0 TGGGTTCAAGTCCCACCTCTCGCACCAAGAT 14 134 1 AGAGGGGGTCTCCCCCCTCCAAATGTTAACG 8 26 0 TTTTCCACCTCCTCTTAGAAGTGTCG 15 17 0 CCTATTCCCTCCTTCTCCTCAATATG 17 5 1 AACTCTCCCCTCCTAACATAAGAT 7 3 1 ACTTTTCCCTCCTTTTTCTGGGCTTT 18 5 1 GCGGGGGTTACCCCGCCTTTTCTGTGGGGTG 2 15 1 ATACCATATCCACCACCTCCAGATCGTTTGA 16 138 0 GAACGCACCTCCTCGCGTTTTTTTAA 21 284 0 GTTCCCACCACCTGTAACAATTA 19 63 0 CCTAAATCCCCCCTTTCCATAATGAAT 3 283 0 GTGTGCACCTCCTCTAAATTCCGGGT 8 73 0 GTCATCTTTCCTCCTTCTTGTTGCCTCT 5 282 0 CCGATTGCACCTCCTCGACAACATGGAT 1 72 0 GAGCGCGTTGTTTCACCTCCTTATGAGAGGA 21 197 1 CCCATCACCTCGTTAGAACGAAA 13 17 0 TGAAGAAGCTCCTCACCTTTT 20 0 0 GGAGGGGGGAGACCCCCTCTTTGTATTTGAA 8 37 1 GTTCTATCCTCTCCTTTCTCGATCTCTC 19 7 1 AACATCTTACCTCCCCTCAGAATAAATT 11 16 0 GAAGGGGAAATTTCCCCTTCTTTTTTGTCTG 14 245 0 GAAGGGGAAATTTCCCCTTCTTCTTTTTCTT 14 256 1 TCTCTCACCCCGTAACAATTGTT 18 76 0 CGTCTGCCAGTTCCGCCACTCTCGCACCGCT 14 68 0 GGCTCTTCTACCTCCACGACATAAAGAAA 14 281 0 TCAGTGATGTTACCACATCTTTTCGATTCAA 7 186 0 **** ****** MAP Score: 43.8785 Motif 2 ATACAATAACGTGGGTTAAATCCATGTTGTCGAGG 1 53 1 CACAGAAAAGGCGGGGTAACCCCCGCCCGTT 2 6 0 TAGCTGACTTGAGGGATAGTATCTGCTTGCTTTTA 3 93 1 GAATATTTTTATGGGATCATTTCACATCAAGTAGA 6 21 0 TTAACATTTGGAGGGGGGAGACCCCCTCTTTGTAT 8 28 1 GGCAAGTGCCGGGGGTTGATTTGCGGTGGTGTGGA 10 10 0 TCAGGGGGTCGTGGGTTCGAATCCCACCCGGGTCA 14 31 1 TTAGAATCCAGTGGGCTGAAGCCCGTGTGGGTTCA 14 107 1 TGAAGCCCGTGTGGGTTCAAGTCCCACCTCTCGCA 14 123 1 GATAGAGCAGGCGGGTGTAGCTCAGTGGTAGAGCA 14 162 1 GCTGGGGGTCGCGGGTTCGAATCCCGTCGCCCGCT 14 209 1 GACAAAAAAGAAGGGGAAATTTCCCCTTCTTCTTT 14 247 1 TGAGAGAACATCGGGATTGTAACCCAATGTGAGAT 17 73 1 * *** * * **** MAP Score: 14.831 Motif 3 GGGTTAAATCCATGTTGTCGAGGAGGTGCAATCGG 1 65 1 AACGGGCGGGGGTTACCCCGCCTTTTCTGT 2 2 1 GCATAGCTGACTTGAGGGATAGTATCTGCTTGCTTTTA 3 90 1 AAATCGTTTTCCGGCGGAGGTGTATTCTT 4 1 0 ACTTAGTGTTCCTGTTGGTGCGATTCTGCTCTTCAGAA 5 215 1 CCGGCAAGTGCCGGGGGTTGATTTGCGGTGGTGTGGA 10 9 0 CCGGCACTTGCCGGGGGTTTTGTTTTGTTGTATAATTT 10 33 1 AAAATTTATTCTGAGGGGAGGTAAGATGTT 11 14 1 GACTTTTAATCAGGGGGTCGTGGGTTCGAATCCCACCC 14 22 1 CGGGTCACCAGCGGTGCGAGAGTGGCGGAACTGGCAGA 14 59 1 GCGGAACTGGCAGACGCGCTGGACTTAGAATCCAGTGG 14 83 1 CAAGATAGAGCAGGCGGGTGTAGCTCAGTGGTAGAGCA 14 159 1 GCTTGCCAAGCTGGGGGTCGCGGGTTCGAATCCCGTCG 14 200 1 TCTTTTTTGTCTGGAGCGGGCGACGGGATTCGAACCCG 14 220 0 ATCAAACGATCTGGAGGTGGTGGATATGGTATCGGG 16 137 1 * ** *** * * * * MAP Score: 12.5941 Motif 4 TCAGGGGGTCGTGGGTTCGAATCCCACCCGGGTCACC 14 31 1 GTTAACATTTGGAGGGGGGAGACCCCCTCTTTGTATT 8 27 1 TGAAGCCCGTGTGGGTTCAAGTCCCACCTCTCGCACC 14 123 1 CCACAGAAAAGGCGGGGTAACCCCCGCCCGTT 2 5 0 GCTGGGGGTCGCGGGTTCGAATCCCGTCGCCCGCTCC 14 209 1 CTTTGGACGGGATGGTATAATCACCACAGGATTTAAC 12 26 1 AGACAAAAAAGAAGGGGAAATTTCCCCTTCTTCTTTT 14 246 1 GTTTTATAGGAAAGATAAAAGCCCCACACAATGAGAT 5 127 0 CAGTTGTTCTGAAGAGCAGAATCGCACCAACAGGAAC 5 222 0 CTTAGAATCCAGTGGGCTGAAGCCCGTGTGGGTTCAA 14 106 1 CTCCTTATGAGAGGATTATACTCCTTCCGGGGTAACT 21 213 1 ATGAAAATTCGGTGATAAAATCCCTTTGAAGTATCAG 7 49 0 ATTCACCATAGTCGATTATAACACCTCTCACTGTCAT 0 35 1 ATACAATAACGTGGGTTAAATCCATGTTGTCGAGGAG 1 53 1 CGCTTCTATCGTAGGTAAAAGGAACTTGCCAAGCACC 21 42 0 TAACAATTAGGTTGATATAATTCCATTGAATCAAACG 16 108 1 * *** ** *** * MAP Score: 11.7904 Motif 5 AATTTTTATCTGATATTTTTTTC 0 2 1 TTATCTGATATTTTTTTCACATTCACCATAG 0 15 1 TGACTGTTTCTTTTCTTTTCATCATATGACA 0 66 0 TATCACGTAGTTTTCTTTGCACGTTCTGATA 3 250 1 TCCATAATGAATTTTATCAGAACGTGCAAAG 3 264 0 CATCATTTTGTTTTCACGCCAGGCTACATCG 5 16 0 CTTTCGGAGAATTTCTTCACAAGTATATCCA 5 51 0 TTGCCTTCATTGTTTATCTCATTGTGTGGGG 5 112 1 AAGGAGAATATTTTTATGGGATCATTTCACA 6 30 0 TTGTTTCCTCTTTTTTTCTAATTTTTCTTAT 6 77 1 ATGTTTCAAATTTTCACGTCAGTGATGTTAC 7 204 0 TTTTTTTCGACACTTCTAAGAG 15 1 1 AACCTCTTCACTTTTTTCACAAAAGCCTTTG 16 44 0 CAAAGAAACCTTTTCATCACAGAAAGGTGAA 16 73 0 TCATGCCAGATTTTTTTGTCAGGAGGTGGTA 17 118 1 CACATCTTTTTTTCTGAAGAAGCTCCT 20 18 0 TATTTTCATCTCAATCTGAGATA 21 2 1 ******** ** MAP Score: 10.3343 Motif 6 TCATCATATGACAGTGAGAGGTGTTATAATCGA 0 46 0 GTTACCCCGCCTTTTCTGTGGGGTGTTAGC 2 21 1 AAAATTCATTATGGAAAGGGGGGATTTAGG 3 280 1 AAAATCGTTTTCCGGCGGAGGTGTATTCTT 4 7 0 TGAACTGTTATTTTTCCGGGAGGGATCGTT 4 88 1 ATTGTTTATCTCATTGTGTGGGGCTTTTATCTT 5 120 1 TTCAGTACAGTTGTTCTGAAGAGCAGAATCGCA 5 233 0 CGAAAATCTTATGTTAGGAGGGGAGAGTT 7 6 0 CAATCCGTTAACATTTGGAGGGGGGAGACCCCC 8 21 1 TTACCCGGAATTTAGAGGAGGTGCACAC 8 71 1 CCGGGGGTTGATTTGCGGTGGTGTGGA 10 4 0 AACCAAAATTTATTCTGAGGGGAGGTAAGATG 11 9 1 CTCTTGAATTTCCTTTGGACGGGATGGTATAAT 12 14 1 ACAGCTTTCGTTCTAACGAGGTGATGGG 13 12 1 AGCACCTGACTTTTAATCAGGGGGTCGTGGGTT 14 15 1 CCCTTCTTTTTTGTCTGGAGCGGGCGACGGGAT 14 229 0 AATCAAACGATCTGGAGGTGGTGGATATGGTAT 16 136 1 CCAGATTTTTTTGTCAGGAGGTGGTATT 17 123 1 TCTGTAACAATTGTTACGGGGTGAGAGA 18 71 1 AGACTGTATCTCAGATTGAGATGAAAATA 21 6 0 TATAATCCTCTCATAAGGAGGTGAAACAACGCG 21 200 0 ** * ******* MAP Score: 8.12227 Motif 7 CACCATAGTCGATTATAACACCTCTCACTGT 0 38 1 GAAAAGAAAAGAAACAGTCACAAAGTGTTGC 0 77 1 ATCCCCATTTGATTCTATCACTACATGCAAC 0 103 0 ACGATTTCAAGAATTAATCCCCATTTGATTC 0 119 0 CAATAACGTGGGTTAAATCCATGTTGTCGAG 1 56 1 ACGCTGCAAAGAATCTAGCCAGGT 3 3 0 AAAGCAAGCAGATACTATCCCTCAAGTCAGC 3 95 0 TTATAGGAAAGATAAAAGCCCCACACAATGA 5 130 0 TACTTGATGTGAAATGATCCCATAAAAATAT 6 23 1 AAAATTCGGTGATAAAATCCCTTTGAAGTAT 7 52 0 GAAAAGATGTGGTAACATCACTGACGTGAAA 7 193 1 CTGTGGTGATTATACCATCCCGTCCAAAGGA 12 24 0 ACCCGGGTGGGATTCGAACCCACGACCCCCT 14 33 0 CGGGCGACGGGATTCGAACCCGCGACCCCCA 14 211 0 AAGAAGAAGGGGAAATTTCCCCTTCTTTTTT 14 250 0 TGAAATATCCCTCCTCCTGTG 16 0 1 CTCACATTGGGTTACAATCCCGATGTTCTCT 17 75 0 ***** ***** MAP Score: 3.24605 Motif 8 ATTGTCACCTCCAGATTTCAAACG 0 147 0 GGCGGGGGTTACCCCGCCTTTTCTGTGGGG 2 14 1 CATGATGCGCTCCACTCTTTGGCTTCTTTA 3 40 1 TACCTTATCATTCTTGCCTTCATTGTTTAT 5 99 1 CATCTTTCCTCCTTCTTGTTGCCTCTGAAT 5 278 0 GAAACTTTTGTTTCCTCTTTTTTTCTAATT 6 70 1 TTTTCCATTCCTTTCGTTTGTTA 6 148 0 AACTCTCCCCTCCTAACATAAGATT 7 5 1 AGGGGGGAGACCCCCTCTTTGTATTTGAAC 8 39 1 GACAAACCTCCCTTCTCATTGATCACAGTT 12 60 0 CCCATCACCTCGTTAGAACGAAAG 13 16 0 GAACCCGCGACCCCCAGCTTGGCAAGCTGG 14 197 0 GGGGAAATTTCCCCTTCTTTTTTGTCTGGA 14 243 0 AGGGGAAATTTCCCCTTCTTCTTTTTCTTT 14 258 1 TTTTCCACCTCCTCTTAGAAGTGT 15 19 0 TGAAATATCCCTCCTCCTGTGTTAAT 16 6 1 CCTATTCCCTCCTTCTCCTCAATA 17 4 1 AATACCACCTCCTGACAAAAAAAT 17 127 0 ACTTTTCCCTCCTTTTTCTGGGCT 18 4 1 GTTCTATCCTCTCCTTTCTCGATCTC 19 6 1 CTGAAGAAGCTCCTCACCTTTT 20 2 0 GCGCGTTGTTTCACCTCCTTATGAGAGGAT 21 199 1 GAACGCACCTCCTCGCGTTTTTTTAAATT 21 281 0 ********** MAP Score: 2.43793