AlignACE 3.0 10/20/99 AlignACE2 -i TM/TM_operons021_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944252406 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TM0168 91 leucyl-tRNA synthetase #1 TM0175 58 acyl carrier protein #2 TM0177 24 conserved hypothetical protein #3 TM0205 47 ATP-dependent DNA helicase #4 TM0209 155 6-phosphofructokinase #5 TM1089 300 TRK system potassium uptake protein TrkH #6 TM1440 299 translation initiation factor, eIF-2B alpha subunit-related #7 TM1446 300 conserved hypothetical protein #8 TM1691 33 conserved hypothetical protein #9 TM1694 98 thiamin biosynthesis protein ThiI #10 TM1709 300 conserved hypothetical protein #11 TM1715 100 conserved hypothetical protein #12 TM1753 102 excinuclease ABC, subunit B-related protein #13 TM1761_TM1762 116 TM1761: excinuclease ABC, subunit B, TM1762: transketolase, putative Motif 1 AAATTATCCAGTGGTGGAAGAGTTCATCGAA 10 86 1 TTTGGATAGCGAGGTAGAAGCGTACTTTAAA 10 56 1 ACGGTGGAAGCTCTCATCTTC 5 0 1 TCAAAACGATGAGGGCGAAGACAAGCACGAA 3 14 0 TTCTCTCGTGGAGGTGAAAGAAG 2 11 1 AATTTTAAAGGGGGCCGAAGCCCCCGTTTA 1 9 0 CTATCCCTTGGAAGCGGAAGATCCTTCAACT 5 122 0 GACGAGGTGTTCGGTGGAAGAATGATACTGA 7 166 1 AGTGGTAGTGGAAGTCGAAGAGTACGATGTG 7 51 1 AAGTGTGAACGTGGAAGAAGACAGTCCGGTT 5 81 1 GAGTACCAGAGAACTGGAAGAAGGATAATCA 10 151 1 AGCCAAAGAAACAGTCGAAGAGACACTGCTT 5 252 1 TTTCAACCAGAAGGGGGAATATCTG 8 18 1 GAAATCATGAAGAGGAGAAGAGATACTGAAG 6 85 0 GAAAGAGTTTAGGGTAGAATACTATAGAGGT 6 272 1 TTTCGGAAAGGAGCTGGAAGG 0 0 0 ACTCAAAGTGGCGATAGAAGAGTACCAGAGA 10 132 1 CATATCTATAATGGTAGAATCTCAAAGGACA 13 67 0 CGAGCCTGAAACGGGAAAAGCTTTAAACCTC 7 114 1 TATCGCACACAGGCTGAAAGAAATGCTGGAA 10 225 1 GAATGATACTGAGCGAAAAGCGGTATGAAGA 7 185 1 GATTAACTGGGGGGCGAAATCATGAAGAGGA 6 100 0 CGTAAGTGCAGAAGCCAAAGAAACAGTCGAA 5 240 1 GGATAAGATTTTAGCAGAAGAAACACAGAAT 9 73 0 * ********* MAP Score: 22.9117 Motif 2 CCTTCCAGCTCCTTTCCGAAAAA 0 2 1 GTCTACACCTCCTGATATTTCCT 0 78 0 TAAACGGGGGCTTCGGCCCCCTTTAAAATTG 1 10 1 CTTCTTTCACCTCCACGAGAGAAA 2 9 0 TCGTGCTTGTCTTCGCCCTCATCGTTTTGAT 3 15 1 CTATGTCAATTTACCACTTCTTCGTGATGTT 4 48 0 CGGTGGAAGCTCTCATCTTCCCAGATGAGTT 5 11 1 GCGGAAGATCCTTCAACTTCTTTCCCACAAC 5 109 0 GTTGAAGGATCTTCCGCTTCCAAGGGATAGT 5 123 1 TCGACTGTTTCTTTGGCTTCTGCACTTACGA 5 239 0 TTCCAATTTTTCTCACCTTCCAAGCAGTGTC 5 273 0 CACTTCAGTATCTCTTCTCCTCTTCATGATT 6 83 1 CTCTTCATGATTTCGCCCCCCAGTTAATCTT 6 102 1 TCGACTTCCACTACCACTCCCGAGTTCACGA 7 38 0 ACATCGTACTCTTCGACTTCCACTACCACTC 7 50 0 TCTGAGAGCTCTCCTTCTCCACCATTTTTTT 7 238 0 CAGATATTCCCCCTTCTGGTTGAAATT 8 16 0 CAGCCATCCCTCCTGAAACTTGCG 9 3 1 CGCTCACACCTTCTCTATGTCCCT 10 286 0 GTCAACACCTCCCAGTTTGAAAT 11 87 0 CGTTAAACCTCACCTCCCACAACTGGGT 13 7 1 AATTTTTTCCTCCTGGAAAACTTT 13 102 0 **** ****** MAP Score: 21.0934 Motif 3 AGTGGTAGTGGAAGTCGAAGAGTACGATGTGGAGG 7 51 1 TTTGGATAGCGAGGTAGAAGCGTACTTTAAAAATT 10 56 1 AAATTATCCAGTGGTGGAAGAGTTCATCGAAGAAG 10 86 1 TAGAATAGATCCCGACGAGGTGTTCGGTGGAAGAA 7 153 1 TTTCTCTCGTGGAGGTGAAAGAAG 2 5 1 CGAAGAGTACGATGTGGAGGGTTTCGTGCCGAACA 7 66 1 TTGTTAACATCACGAAGAAGTGGTAAATTGACATA 4 43 1 ACGGTGGAAGCTCTCATCTTCCCAG 5 0 1 GAAATCATGAAGAGGAGAAGAGATACTGAAGTGGC 6 81 0 ATGCTAAACTCTCATTGAAGAGAACAAACAATTCA 4 113 1 ACTCAAAGTGGCGATAGAAGAGTACCAGAGAACTG 10 132 1 ACAGTTTATCACCGGAGAGGATCTCCGTATCTCCT 5 198 0 AGAAAGGAAAAACATAGAGGAGTACAAAAAAATGG 7 213 1 TCTAAGTGTGAACGTGGAAGAAGACAGTCCGGTTG 5 78 1 TCACAGCCTGCTTTGTGAAGAGATCCAAAAATTTT 11 17 1 CCCAGTTGTGGGAGGTGAGGTTTAACG 13 2 0 ATGATACTATCCCTTGGAAGCGGAAGATCCTTCAA 5 124 0 TCTTTTGTCAACATAAGAGGTGATCGG 12 2 0 CTATTCTAAGAACGACGAGGTTTAAAGCTTTTCCC 7 126 0 GGAAGAGTTCATCGAAGAAGATCTATGAAGTACTC 10 101 1 TACCAGAGAACTGGAAGAAGGATAATCACTGTGGG 10 154 1 AGCCAAAGAAACAGTCGAAGAGACACTGCTTGGAA 5 252 1 GTCCGGTTGTGGGAAAGAAGTTGAAGGATCTTCCG 5 104 1 AAAAAATGGTGGAGAAGGAGAGCTCTCAGAAATCC 7 239 1 * ** **** * ** MAP Score: 17.8405 Motif 4 AATCCATTGGAGACCTTCTCAAAAAGAATG 7 269 1 GATTTCTGAGAGCTCTCCTTCTCCACCATT 7 243 0 CGCTCACACCTTCTCTATGTCCCTG 10 285 0 AACCCCACCTCTATAGTATTC 6 288 0 CGTTAAACCTCACCTCCCACAACTGG 13 6 1 CCACTTCAGTATCTCTTCTCCTCTTCATGA 6 82 1 TGCCGAACAACCATCTTCTCAGCGAGCCTG 7 92 1 ACGGTGGAAGCTCTCATCTTCCCAGATG 5 8 1 GTCTACACCTCCTGATATTTCCTT 0 77 0 TGCTTGTCTTCGCCCTCATCGTTTTGATGA 3 18 1 CCGATCACCTCTTATGTTGAC 12 1 1 GTCCAAAGATATCCCTCCTTAAACTCTATA 11 52 1 CAGCCATCCCTCCTGAAACTTGCGG 9 5 1 AGTACTTCATAGATCTTCTTCGATGAACTC 10 105 0 CAGATATTCCCCCTTCTGGTTGAAATTA 8 15 0 GGAGATACGGAGATCCTCTCCGGTGATAAA 5 199 1 CCCGAGTTCACGATCTTCTTTATGGTTCCA 7 21 0 ATTCTTCCACCGAACACCTCGTCGGGATCT 7 159 0 ATGTCAATTTACCACTTCTTCGTGATGTTA 4 47 0 GGATCTCCGTATCTCCTCTCGGAACCACAA 5 185 0 CGGAACCACAAGCACTCCACCGCGGACGAT 5 166 0 ATGATGCTGGAGAACTCATCTGGGAAGATG 5 24 0 AAATTTTTGGATCTCTTCACAAAGCAGGCT 11 21 0 ********** MAP Score: 16.6815 Motif 5 AATTTTAATCCTCCTTACACCAAGATTCAG 4 9 1 GGCGATCAGCCTCCCTGTGAATTGTTT 4 138 0 TGGAAGCTCTCATCTTCCCAGATGAGTTCTC 5 14 1 AAACTCAATACCTTGTTCCAGCGGTATGATG 5 48 0 AACCGGACTGTCTTCTTCCACGTTCACACTT 5 81 0 CCAATTTTTCTCACCTTCCAAGCAGTGTCTC 5 271 0 CTTCATGATTTCGCCCCCCAGTTAATCTTCG 6 104 1 ATCGTACTCTTCGACTTCCACTACCACTCCC 7 48 0 GTTCGGCACGAAACCCTCCACATCGTACTCT 7 69 0 CGCTCAGTATCATTCTTCCACCGAACACCTC 7 169 0 CTGAGAGCTCTCCTTCTCCACCATTTTTTTG 7 237 0 CAGCCATCCCTCCTGAAACTTGCGG 9 4 1 TTCTTCGATGAACTCTTCCACCACTGGATAA 10 89 0 CAGTGATTATCCTTCTTCCAGTTCTCTGGTA 10 154 0 GCCGGTACATCCTATTCCCACAGTGATTATC 10 174 0 CGTAAAACCTTCTTTTTCCAGCATTTCTTTC 10 240 0 GTCAACACCTCCCAGTTTGAAATTA 11 85 0 CGTTAAACCTCACCTCCCACAACTGGGTCA 13 9 1 ATATGTTAAAAAGTTTTCCAGGAGGAAAAAA 13 93 1 ** ******** MAP Score: 16.0152 Motif 6 GATAGAATTTTTCGGAAAGGAGCTGGAAGG 0 8 0 TGATATTATTAACTTTGAGAAGGAAATATCAG 0 58 1 TCTCTCGTGGAGGTGAAAGAAG 2 12 1 CATCAAAACGATGAGGGCGAAGACAAGCACGA 3 15 0 CCCTGAATCTTGGTGTAAGGAGGATTAAAATT 4 10 0 GTTTGTTAACATCACGAAGAAGTGGTAAATTG 4 41 1 CTAAGTGTGAACGTGGAAGAAGACAGTCCGGT 5 79 1 CAGTCCGGTTGTGGGAAAGAAGTTGAAGGATC 5 102 1 GTGCTTGTGGTTCCGAGAGGAGATACGGAGAT 5 181 1 ACAGTTTATCACCGGAGAGGATCTCCGTATCT 5 201 0 CGTGAGTGGAACCATAAAGAAGATCGTGAACT 7 15 1 AGAAAGGAAAAACATAGAGGAGTACAAAAAAA 7 213 1 GTACAAAAAAATGGTGGAGAAGGAGAGCTCTC 7 234 1 GGTTTGGATAGCGAGGTAGAAGCGTACTTTAA 10 54 1 GTACTCAAAGTGGCGATAGAAGAGTACCAGAG 10 130 1 AGTACCAGAGAACTGGAAGAAGGATAATCACT 10 152 1 GAAACACAGGGACATAGAGAAGGTGTGAGCG 10 279 1 TTATACTATAGAGTTTAAGGAGGGATATCTTT 11 56 0 TATAATTTCAAACTGGGAGGTGTTGAC 11 83 1 TATGACCCAGTTGTGGGAGGTGAGGTTTAACG 13 10 0 * * ******** MAP Score: 15.5859 Motif 7 CTGATATTATTAACTTTGAGAAGGAAATATCAGGA 0 57 1 TTTCTCTCGTGGAGGTGAAAGAAG 2 4 1 TTTGTTAACATCACGAAGAAGTGGTAAATTGACAT 4 42 1 TATGCTAAACTCTCATTGAAGAGAACAAACAATTC 4 112 1 AACAAACAATTCACAGGGAGGCTGATCGCC 4 135 1 GATGATACTATCCCTTGGAAGCGGAAGATCCTTCA 5 125 0 ACGTACAGTTTATCACCGGAGAGGATCTCCGTATC 5 202 0 CTCAAAAAATTCGCCAAGAGCTTGGGTTTGAGAGT 6 20 0 GGGGGCGAAATCATGAAGAGGAGAAGAGATACTGA 6 87 0 AAACGAAGATTAACTGGGGGGCGAAATCATGAAGA 6 103 0 TAGGGTAGAATACTATAGAGGTGGGGTT 6 281 1 CGTTTCAGGCTCGCTGAGAAGATGGTTGTTCGGCA 7 92 0 TTAGAATAGATCCCGACGAGGTGTTCGGTGGAAGA 7 152 1 CACTCTCCATTCTTTTTGAGAAGGTCTCCAATGGA 7 271 0 TGATATAATTTCAACCAGAAGGGGGAATATCTG 8 10 1 GATAGAAGAGTACCAGAGAACTGGAAGAAGGATAA 10 144 1 AGAAGGATAATCACTGTGGGAATAGGATGTACCGG 10 169 1 TCTGTGTATATCGCACACAGGCTGAAAGAAATGCT 10 217 1 AATGGTAGAATCTCAAAGGACAGATACAACTATCT 13 54 0 ** * **** *** MAP Score: 15.095 Motif 8 CATTCTTCCACCGAACACCTCGTCGGGATCTATT 7 156 0 CGAGCCACTTCAGTATCTCTTCTCCTCTTCATGA 6 78 1 ACGGGAAAAGCTTTAAACCTCGTCGTTCTTAGAA 7 124 1 GAGAGGATCTCCGTATCTCCTCTCGGAACCACAA 5 185 0 CTTTGAATCTCTGAAAATCTCATGTTTACAACAC 6 163 0 ACACTACGTACCGGAACTTTCTTCAAAGACGGGT 10 23 1 CGGTATGATGCTGGAGAACTCATCTGGGAAGATG 5 24 0 GAAGTCCCCCCATGAAATCCTATCACAATTTTAA 1 32 0 TTAAAGGGGGCCGAAGCCCCCGTTTA 1 2 0 CGCTCACACCTTCTCTATGTCCCTG 10 285 0 TCTCAATGACCGTAAAACCTTCTTTTTCCAGCAT 10 247 0 TGTTTCTTCTGCTAAAATCTTATCCGGAG 9 79 1 TGCTTGCCGCCGGTACATCCTATTCCCACAGTGA 10 179 0 ACGGTGGAAGCTCTCATCTTCCCAGATG 5 4 1 GCTTTTCGCTCAGTATCATTCTTCCACCGAACAC 7 172 0 CAGAAATCCATTGGAGACCTTCTCAAAAAGAATG 7 265 1 GCGGAAGATCCTTCAACTTCTTTCCCACAACCGG 5 106 0 CGTTAAACCTCACCTCCCACAACT 13 0 1 TTCCCACAGTGATTATCCTTCTTCCAGTTCTCTG 10 157 0 TGATGCATATGCTAAACTCTCATTGAAGAGAACA 4 105 1 TTTTTTCCTCCTGGAAAACTTTTTAACATATCTA 13 90 0 GTCTACACCTCCTGATATTTCCTTCTCAAAGTTA 0 67 0 CCGATCACCTCTTATGTTGACAAAAG 12 2 1 TGGAACATTACATAAAACTTTGTGTAATCTTTTG 12 30 0 AACCAGGAAACGGCAAATTCTGTGTTTCTTCTGC 9 57 1 GGCGATCAGCCTCCCTGTGAATTGTTT 4 138 0 GAAACATCAAGATCAAAATTTGTCAACATT 12 82 1 * * * ***** ** MAP Score: 14.537 Motif 9 ACACTGCTTGGAAGGTGAGAAAAATTGGAAGACCTA 5 274 1 CGATAGAAGAGTACCAGAGAACTGGAAGAAGGATAATCACTG 10 143 1 AATTATCCAGTGGTGGAAGAGTTCATCGAAGAAGATCTATGA 10 87 1 GGTAGTGGAAGTCGAAGAGTACGATGTGGAGGGTTTCGTGCC 7 54 1 AAACATAGAGGAGTACAAAAAAATGGTGGAGAAGGAGAGCTC 7 222 1 TCCATCGTGAGTGGAACCATAAAGAAGATCGTGAACTC 7 6 1 ATTATTAACTTTGAGAAGGAAATATCAGGAGGTGTAGAC 0 62 1 GAGAAGGAGAGCTCTCAGAAATCCATTGGAGACCTTCTCAAA 7 250 1 AGGTTTTACGGTCATTGAGAAACACAGGGACATAGAGAAGGT 10 261 1 ATCTATGAAGTACTCAAAGTGGCGATAGAAGAGTACCAGAGA 10 121 1 AGACAGTCCGGTTGTGGGAAAGAAGTTGAAGGATCTTCCGCT 5 99 1 GTGATAGAATTTTTCGGAAAGGAGCTGGAAGG 0 0 0 AGAATGATACTGAGCGAAAAGCGGTATGAAGAAAGGAAAAAC 7 184 1 AATACCTTGTTCCAGCGGTATGATGCTGGAGAACTCATCTGG 5 31 0 AGATTAACTGGGGGGCGAAATCATGAAGAGGAGAAGAGATAC 6 90 0 CTATAGAGTTTAAGGAGGGATATCTTTGGACAAAATTTTTGG 11 41 0 ATCGAATCCAGAATGAAAGAGTTTAGGGTAGAATACTATAGA 6 258 1 TTTTCAGAGATTCAAAGAGATATTTTCGGATAATTCTCGATA 6 180 1 AAAGTTCCGGTACGTAGTGTGGGTTCGGGAGAA 10 1 0 TTATAGATATGTTAAAAAGTTTTCCAGGAGGAAAAAATT 13 87 1 CCTTTAAAATTGTGATAGGATTTCATGGGGGGACTTCAC 1 29 1 GGTATTGAGTTTCTAAGTGTGAACGTGGAAGAAGACAGTCCG 5 67 1 GTAAGTGCAGAAGCCAAAGAAACAGTCGAAGAGACACTGCTT 5 241 1 ACCGGAACTTTCTTCAAAGACGGGTTTGGATAGCGAGGTAGA 10 32 1 CCAAGATTCAGGGTTTGTTAACATCACGAAGAAGTGGTAAAT 4 29 1 * **** ***** MAP Score: 12.7552 Motif 10 GCTCCTTTCCGAAAAATTCTATCACAAATGGCTGAAAAATC 0 17 1 GAAAAATCTGATATTATTAACTTTGAGAAGGAAATATCAGG 0 50 1 TTCAGGGTTTGTTAACATCACGAAGAAGTGGTAAATTGACA 4 35 1 TGATGCATATGCTAAACTCTCATTGAAGAGAACAAACAATT 4 105 1 AACAGTCGAAGAGACACTGCTTGGAAGGTGAGAAAAATTGG 5 261 1 ACTGGGGGGCGAAATCATGAAGAGGAGAAGAGATACTGAAG 6 85 0 TCTTCGTTTTAAAAAATTATAACACAGATGGATTGTGTTGT 6 129 1 AAGAGTTTAGGGTAGAATACTATAGAGGTGGGGTT 6 274 1 AGCTTTTCCCGTTTCAGGCTCGCTGAGAAGATGGTTGTTCG 7 95 0 ATAGAGGAGTACAAAAAAATGGTGGAGAAGGAGAGCTCTCA 7 226 1 TGATATAATTTCAACCAGAAGGGGGAATATCT 8 1 1 CTCCGGATAAGATTTTAGCAGAAGAAACACAGAAT 9 73 0 ATCCAGTGGTGGAAGAGTTCATCGAAGAAGATCTATGAAGT 10 91 1 CACACAGGCTGAAAGAAATGCTGGAAAAAGAAGGTTTTACG 10 230 1 GTCATTGAGAAACACAGGGACATAGAGAAGGTGTGAGCG 10 271 1 CCACAACTGGGTCATAATATTGATCAAGAGATAGTTGTATC 13 26 1 TTATAGATATGTTAAAAAGTTTTCCAGGAGGAAAAAATT 13 87 1 * * * ******* MAP Score: 11.4076 Motif 11 TAAACGGGGGCTTCGGCCCCCTTTAAAATTGTG 1 8 1 GTTCGTGCTTGTCTTCGCCCTCATCGTTTTGATGA 3 13 1 GGCGATCAGCCTCCCTGTGAATTGTT 4 139 0 CTGGGAAGATGAGAGCTTCCACCGT 5 0 0 CAACCGGACTGTCTTCTTCCACGTTCACACTTAGA 5 78 0 TATCATCGCTGCCATCGTCCGCGGTGGAGTGCTTG 5 153 1 AGGAGATACGGAGATCCTCTCCGGTGATAAACTGT 5 198 1 TCCTCTTCATGATTTCGCCCCCCAGTTAATCTTCG 6 100 1 CGTACTCTTCGACTTCCACTACCACTCCCGAGTTC 7 42 0 AACGGGAAAAGCTTTAAACCTCGTCGTTCTTAGAA 7 123 1 CAGATATTCCCCCTTCTGGTTGAAA 8 18 0 TTTTAAAGTACGCTTCTACCTCGCTATCCAAACCC 10 53 0 CTTCGATGAACTCTTCCACCACTGGATAATTTTTA 10 83 0 TTCTCTGGTACTCTTCTATCGCCACTTTGAGTACT 10 129 0 * **** ** ** * MAP Score: 9.97926 Motif 12 TCAGATTTTTCAGCCATTTGTGATAGAATTTTTC 0 27 0 GTCTACACCTCCTGATATTTCCTTCT 0 75 0 GTCAATTTACCACTTCTTCGTGATGTTAACAAAC 4 41 0 CATGTACATTTTATCACTTTTGATGCATATGCTA 4 85 1 ATATGCTAAACTCTCATTGAAGAGAACAAACAAT 4 111 1 AGTATCTCTTCTCCTCTTCATGATTTCGCCCCCC 6 89 1 ACCCTAAACTCTTTCATTCTGGATTCGATAATTG 6 253 0 CTTCTTTATGGTTCCACTCACGATGGA 7 3 0 TCGACTTCCACTACCACTCCCGAGTTCACGATCT 7 35 0 ATAGTTGTATCTGTCCTTTGAGATTCTACCATTA 13 56 1 CTTTGAGATTCTACCATTATAGATATGTTAAAAA 13 71 1 ** ***** *** MAP Score: 3.81483