AlignACE 3.0 10/20/99 AlignACE2 -i TM/TM_operons021_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944252436 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TM0168 91 leucyl-tRNA synthetase #1 TM0175 58 acyl carrier protein #2 TM0177 24 conserved hypothetical protein #3 TM0205 47 ATP-dependent DNA helicase #4 TM0209 155 6-phosphofructokinase #5 TM1089 300 TRK system potassium uptake protein TrkH #6 TM1440 299 translation initiation factor, eIF-2B alpha subunit-related #7 TM1446 300 conserved hypothetical protein #8 TM1691 33 conserved hypothetical protein #9 TM1694 98 thiamin biosynthesis protein ThiI #10 TM1709 300 conserved hypothetical protein #11 TM1715 100 conserved hypothetical protein #12 TM1753 102 excinuclease ABC, subunit B-related protein #13 TM1761_TM1762 116 TM1761: excinuclease ABC, subunit B, TM1762: transketolase, putative Motif 1 GTTGAAGGATCTTCCGCTTCCAAGGGATAGTA 5 123 1 ACATCGTACTCTTCGACTTCCACTACCACTCC 7 49 0 CTCTTCATGATTTCGCCCCCCAGTTAATCTTC 6 102 1 ATTTCACTCTCCATTCTTTTTGA 7 287 0 TAAACGGGGGCTTCGGCCCCCTTTAAAATTGT 1 10 1 TTCCAATTTTTCTCACCTTCCAAGCAGTGTCT 5 272 0 TTCTGAGAGCTCTCCTTCTCCACCATTTTTTT 7 238 0 ACCGTAAAACCTTCTTTTTCCAGCATTTCTTT 10 241 0 CTTCTTTCACCTCCACGAGAGAAA 2 9 0 CCTTCCAGCTCCTTTCCGAAAAA 0 1 1 AATTTTAATCCTCCTTACACCAAGA 4 3 1 TCGTGCTTGTCTTCGCCCTCATCGTTTTGATG 3 15 1 CGTTAAACCTCACCTCCCACAACTGGGTC 13 7 1 AATTTTTTCCTCCTGGAAAACTTT 13 102 0 CGGTGGAAGCTCTCATCTTCCCAGATGAGTTC 5 11 1 GTCTACACCTCCTGATATTTCCT 0 78 0 ACAACCGGACTGTCTTCTTCCACGTTCACACT 5 82 0 TTAAAGTACGCTTCTACCTCGCTATCCAAACC 10 54 0 CTCTGGTACTCTTCTATCGCCACTTTGAGTAC 10 130 0 GGCCTTTTTCACTCTCAAACCCAAGCTC 6 6 1 CCTCCTGATATTTCCTTCTCAAAGTTAATAAT 0 62 0 CGGGAAAAGCTTTAAACCTCGTCGTTCTTAGA 7 125 1 CAGTATCTCTTCTCCTCTTCATGATTTCGCCC 6 88 1 CACGATCTTCTTTATGGTTCCACTCACGATGG 7 11 0 TTGGCGAATTTTTTGAGCTCCTGAATACTTGG 6 38 1 GCTTTTCCCGTTTCAGGCTCGCTGAGAAGATG 7 103 0 **** ****** MAP Score: 26.716 Motif 2 CCTTCCAGCTCCTTTCCGAAAAA 0 2 1 GTCTACACCTCCTGATATTTCCT 0 78 0 TAAACGGGGGCTTCGGCCCCCTTTAAAATTG 1 10 1 CTTCTTTCACCTCCACGAGAGAAA 2 9 0 TCGTGCTTGTCTTCGCCCTCATCGTTTTGAT 3 15 1 CTATGTCAATTTACCACTTCTTCGTGATGTT 4 48 0 CGGTGGAAGCTCTCATCTTCCCAGATGAGTT 5 11 1 GCGGAAGATCCTTCAACTTCTTTCCCACAAC 5 109 0 GTTGAAGGATCTTCCGCTTCCAAGGGATAGT 5 123 1 TCGACTGTTTCTTTGGCTTCTGCACTTACGA 5 239 0 TTCCAATTTTTCTCACCTTCCAAGCAGTGTC 5 273 0 CACTTCAGTATCTCTTCTCCTCTTCATGATT 6 83 1 CTCTTCATGATTTCGCCCCCCAGTTAATCTT 6 102 1 TCGACTTCCACTACCACTCCCGAGTTCACGA 7 38 0 ACATCGTACTCTTCGACTTCCACTACCACTC 7 50 0 TCTGAGAGCTCTCCTTCTCCACCATTTTTTT 7 238 0 CAGATATTCCCCCTTCTGGTTGAAATT 8 16 0 CAGCCATCCCTCCTGAAACTTGCG 9 3 1 CGCTCACACCTTCTCTATGTCCCT 10 286 0 GTCAACACCTCCCAGTTTGAAAT 11 87 0 CGTTAAACCTCACCTCCCACAACTGGGT 13 7 1 AATTTTTTCCTCCTGGAAAACTTT 13 102 0 **** ****** MAP Score: 21.0934 Motif 3 TTTCGGAAAGGAGCTGGAAGG 0 1 0 AATTTTAAAGGGGGCCGAAGCCCCCGTTTA 1 10 0 TTCTCTCGTGGAGGTGAAAGAAG 2 11 1 TCAAAACGATGAGGGCGAAGACAAGCACGA 3 15 0 ACGGTGGAAGCTCTCATCTT 5 0 1 TCTAAGTGTGAACGTGGAAGAAGACAGTCC 5 78 1 TTGTGGGAAAGAAGTTGAAGGATCTTCCGC 5 110 1 CTATCCCTTGGAAGCGGAAGATCCTTCAAC 5 123 0 CGTAAGTGCAGAAGCCAAAGAAACAGTCGA 5 240 1 AGCCAAAGAAACAGTCGAAGAGACACTGCT 5 252 1 CGTGAACTCGGGAGTGGTAGTGGAAGTCGA 7 39 1 AGTGGTAGTGGAAGTCGAAGAGTACGATGT 7 51 1 GACGAGGTGTTCGGTGGAAGAATGATACTG 7 166 1 TTTGGATAGCGAGGTAGAAGCGTACTTTAA 10 56 1 AAATTATCCAGTGGTGGAAGAGTTCATCGA 10 86 1 GAGTACCAGAGAACTGGAAGAAGGATAATC 10 151 1 ********** MAP Score: 18.7001 Motif 4 TTTCTCTCGTGGAGGTGAAAGAAG 2 5 1 CCATCATCAAAACGATGAGGGCGAAGACAAGCACG 3 16 0 TTGTTAACATCACGAAGAAGTGGTAAATTGACATA 4 43 1 ATGCTAAACTCTCATTGAAGAGAACAAACAATTCA 4 113 1 ACGGTGGAAGCTCTCATCTTCCCAG 5 0 1 TCTAAGTGTGAACGTGGAAGAAGACAGTCCGGTTG 5 78 1 GTCCGGTTGTGGGAAAGAAGTTGAAGGATCTTCCG 5 104 1 ATGATACTATCCCTTGGAAGCGGAAGATCCTTCAA 5 124 0 ACAGTTTATCACCGGAGAGGATCTCCGTATCTCCT 5 198 0 GAAATCATGAAGAGGAGAAGAGATACTGAAGTGGC 6 81 0 AGTGGTAGTGGAAGTCGAAGAGTACGATGTGGAGG 7 51 1 CTATTCTAAGAACGACGAGGTTTAAAGCTTTTCCC 7 126 0 TAGAATAGATCCCGACGAGGTGTTCGGTGGAAGAA 7 153 1 AGAAAGGAAAAACATAGAGGAGTACAAAAAAATGG 7 213 1 TTTGGATAGCGAGGTAGAAGCGTACTTTAAAAATT 10 56 1 AAATTATCCAGTGGTGGAAGAGTTCATCGAAGAAG 10 86 1 GGAAGAGTTCATCGAAGAAGATCTATGAAGTACTC 10 101 1 ACTCAAAGTGGCGATAGAAGAGTACCAGAGAACTG 10 132 1 TACCAGAGAACTGGAAGAAGGATAATCACTGTGGG 10 154 1 CCCAGTTGTGGGAGGTGAGGTTTAACG 13 2 0 * ** **** * ** MAP Score: 17.8737 Motif 5 TATGAAGAAAGGAAAAACATAGAGGAGTACAAAAAA 7 208 1 TCCGGTTGTGGGAAAGAAGTTGAAGGATCTTCCGCT 5 105 1 AATATGAACCGCAAGTTTCAGGAGGGATGGCTG 9 7 0 ACTGGGGGGCGAAATCATGAAGAGGAGAAGAGATAC 6 90 0 CATCGTGAGTGGAACCATAAAGAAGATCGTGAACTC 7 12 1 AAGAGTACCAGAGAACTGGAAGAAGGATAATCACTG 10 149 1 AAATTGTGATAGGATTTCATGGGGGGACTTCAC 1 35 1 GAATTTTTCGGAAAGGAGCTGGAAGG 0 0 0 TTTTAAAACGAAGATTAACTGGGGGGCGAAATCATG 6 107 0 CTTGGAAGGTGAGAAAAATTGGAAGACCTA 5 280 1 ATACTGAGCGAAAAGCGGTATGAAGAAAGGAAAAAC 7 190 1 AAATCCTATCACAATTTTAAAGGGGGCCGAAGCCCC 1 16 0 CCAGTGGTGGAAGAGTTCATCGAAGAAGATCTATGA 10 93 1 GCAGAAGCCAAAGAAACAGTCGAAGAGACACTGCTT 5 247 1 GAGAGCTCTCAGAAATCCATTGGAGACCTTCTCAAA 7 256 1 AATTATACTATAGAGTTTAAGGAGGGATATCTTTGG 11 54 0 ACTTTGAGAAGGAAATATCAGGAGGTGTAGAC 0 69 1 AAGAGAACAAACAATTCACAGGGAGGCTGATCGCC 4 130 1 AGTTTAGGGTAGAATACTATAGAGGTGGGGTT 6 277 1 TTTCTAAGTGTGAACGTGGAAGAAGACAGTCCGGTT 5 76 1 GGAGTACAAAAAAATGGTGGAGAAGGAGAGCTCTCA 7 231 1 TGATATAATTTCAACCAGAAGGGGGAATATCTG 8 10 1 CATCATCAAAACGATGAGGGCGAAGACAAGCACGAA 3 14 0 GAAGTCGAAGAGTACGATGTGGAGGGTTTCGTGCCG 7 61 1 GGAGACCTTCTCAAAAAGAATGGAGAGTGAAAT 7 277 1 GTTCTTAGAATAGATCCCGACGAGGTGTTCGGTGGA 7 148 1 **** * ***** MAP Score: 16.4808 Motif 6 AATAGATCCCGACGAGGTGTTCGGTGGAAGAATG 7 156 1 TCATGAAGAGGAGAAGAGATACTGAAGTGGCTCG 6 78 0 TTCTAAGAACGACGAGGTTTAAAGCTTTTCCCGT 7 124 0 TTGTGGTTCCGAGAGGAGATACGGAGATCCTCTC 5 185 1 ACCCGTCTTTGAAGAAAGTTCCGGTACGTAGTGT 10 23 0 GTGTTGTAAACATGAGATTTTCAGAGATTCAAAG 6 163 1 CATCTTCCCAGATGAGTTCTCCAGCATCATACCG 5 24 1 TTAAAATTGTGATAGGATTTCATGGGGGGACTTC 1 32 1 TAAACGGGGGCTTCGGCCCCCTTTAA 1 2 1 CAGGGACATAGAGAAGGTGTGAGCG 10 285 1 CTCCGGATAAGATTTTAGCAGAAGAAACA 9 79 0 TCACTGTGGGAATAGGATGTACCGGCGGCAAGCA 10 179 1 ATGCTGGAAAAAGAAGGTTTTACGGTCATTGAGA 10 247 1 CATCTGGGAAGATGAGAGCTTCCACCGT 5 4 0 GTGTTCGGTGGAAGAATGATACTGAGCGAAAAGC 7 172 1 CCGGTTGTGGGAAAGAAGTTGAAGGATCTTCCGC 5 106 1 CATTCTTTTTGAGAAGGTCTCCAATGGATTTCTG 7 265 0 TGTTCTCTTCAATGAGAGTTTAGCATATGCATCA 4 105 0 TAGATATGTTAAAAAGTTTTCCAGGAGGAAAAAA 13 90 1 CAGAGAACTGGAAGAAGGATAATCACTGTGGGAA 10 157 1 CTTTTGTCAACATAAGAGGTGATCGG 12 2 0 TAACTTTGAGAAGGAAATATCAGGAGGTGTAGAC 0 67 1 GCAGAAGAAACACAGAATTTGCCGTTTCCTGGTT 9 57 0 CAAAAGATTACACAAAGTTTTATGTAATGTTCCA 12 30 1 AAACAATTCACAGGGAGGCTGATCGCC 4 138 1 AATGTTGACAAATTTTGATCTTGATGTTTC 12 82 0 ** ***** * * * MAP Score: 14.7619 Motif 7 AGCTCCTTTCCGAAAAATTCTATCACAAATGGCTG 0 16 1 GAAGTCCCCCCATGAAATCCTATCACAATTTTAAA 1 31 0 GCGGAAGATCCTTCAACTTCTTTCCCACAACCGGA 5 105 0 TATTCAGGAGCTCAAAAAATTCGCCAAGAGCTTGG 6 30 0 TAGTATTCTACCCTAAACTCTTTCATTCTGGATTC 6 261 0 GAACGACGAGGTTTAAAGCTTTTCCCGTTTCAGGC 7 117 0 CCCCCTTCTGGTTGAAATTATATCA 8 0 0 TGTTTCTTCTGCTAAAATCTTATCCGGAG 9 79 1 TAGAAGCGTACTTTAAAAATTATCCAGTGGTGGAA 10 70 1 GTGAAGAGATCCAAAAATTTTGTCCAAAGATATCC 11 31 1 GAAACATCAAGATCAAAATTTGTCAACATT 12 82 1 TTATAGATATGTTAAAAAGTTTTCCAGGAGGAAAA 13 87 1 * * *** ** *** MAP Score: 9.53263 Motif 8 TAGAATTTTTCGGAAAGGAGCTGGAAGG 0 8 0 TCAGCCATTTGTGATAGAATTTTTCGGAAA 0 22 0 TCTCGTGGAGGTGAAAGAAG 2 14 1 CTGAATCTTGGTGTAAGGAGGATTAAAATT 4 10 0 TGCATCAAAAGTGATAAAATGTACATGGGT 4 82 0 CATCATACCGCTGGAACAAGGTATTGAGTT 5 48 1 AAGTGTGAACGTGGAAGAAGACAGTCCGGT 5 81 1 GTCCGGTTGTGGGAAAGAAGTTGAAGGATC 5 104 1 GGGTTTGAGAGTGAAAAAGGCC 6 2 0 CGTGAACTCGGGAGTGGTAGTGGAAGTCGA 7 39 1 GAGGTGTTCGGTGGAAGAATGATACTGAGC 7 169 1 CAAAAAAATGGTGGAGAAGGAGAGCTCTCA 7 237 1 TTTGGATAGCGAGGTAGAAGCGTACTTTAA 10 56 1 AAATTATCCAGTGGTGGAAGAGTTCATCGA 10 86 1 TACCAGAGAACTGGAAGAAGGATAATCACT 10 154 1 GAAAGAAATGCTGGAAAAAGAAGGTTTTAC 10 240 1 AGCCTGCTTTGTGAAGAGATCCAAAAATTT 11 21 1 ********** MAP Score: 6.29568 Motif 9 AATTTTAATCCTCCTTACACCAAGATTCAG 4 9 1 AACCGGACTGTCTTCTTCCACGTTCACACTT 5 81 0 CAGCCATCCCTCCTGAAACTTGCGGTTCA 9 8 1 CAAAGATATCCCTCCTTAAACTCTATAGTAT 11 55 1 TTAAACCTCACCTCCCACAACTGGGTCATAA 13 12 1 ****** **** MAP Score: 0.95281 Motif 10 TTTTCGGAAAGGAGCTGGAAGG 0 2 0 GGAAATATCAGGAGGTGTAGAC 0 79 1 TTTCTCTCGTGGAGGTGAAAGAAG 2 10 1 TCAAAACGATGAGGGCGAAGACAAGCACGA 3 15 0 AACATCACGAAGAAGTGGTAAATTGACATA 4 48 1 CCAGCGGTATGATGCTGGAGAACTCATCTG 5 32 0 TTCTAAGTGTGAACGTGGAAGAAGACAGTC 5 77 1 AAGACAGTCCGGTTGTGGGAAAGAAGTTGA 5 98 1 CTATCCCTTGGAAGCGGAAGATCCTTCAAC 5 123 0 ACACTGCTTGGAAGGTGAGAAAAATTGGAA 5 274 1 GCTTGGGTTTGAGAGTGAAAAAGGCC 6 6 0 AGATTAACTGGGGGGCGAAATCATGAAGAG 6 102 0 AGAATACTATAGAGGTGGGGTT 6 287 1 TCGTGAACTCGGGAGTGGTAGTGGAAGTCG 7 38 1 GAGTGGTAGTGGAAGTCGAAGAGTACGATG 7 50 1 ATACTGAGCGAAAAGCGGTATGAAGAAAGG 7 190 1 AGTACAAAAAAATGGTGGAGAAGGAGAGCT 7 233 1 AAAAAGAATGGAGAGTGAAAT 7 289 1 AATTTCAACCAGAAGGGGGAATATCTG 8 16 1 CGCAAGTTTCAGGAGGGATGGCTG 9 4 0 AAAATTATCCAGTGGTGGAAGAGTTCATCG 10 85 1 AAGTACTCAAAGTGGCGATAGAAGAGTACC 10 128 1 AGAGTACCAGAGAACTGGAAGAAGGATAAT 10 150 1 GGGACATAGAGAAGGTGTGAGCG 10 287 1 ATAGAGTTTAAGGAGGGATATCTTTGGACA 11 51 0 CCCAGTTGTGGGAGGTGAGGTTTAACG 13 7 0 ********** MAP Score: 0.367529