AlignACE 3.0 10/20/99 AlignACE2 -i TM/TM_operons023_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944252499 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TM0013 161 conserved hypothetical protein #1 TM0015 90 pyruvate ferredoxin oxidoreductase, gamma subunit #2 TM0033 300 hypothetical protein #3 TM0034 87 iron-sulfur cluster-binding protein #4 TM0402 300 ammonium transporter #5 TM0404 47 deoxycytidylate deaminase, putative #6 TM0880 45 oxaloacetate decarboxylase, beta subunit #7 TM0882 135 O-acetylhomoserine sulfhydrylase #8 TM1162 207 conserved hypothetical protein #9 TM1754 102 butyrate kinase, putative Motif 1 TCTCTCCACCTCCCGTGATAAAATTTT 7 118 0 ACTTAGAAATCACCTCCCGAAAAAGCATCTG 8 60 1 ATTGTCACCTCCAGATTTCAAACGAT 0 145 0 GTTACCACCTCCCATTTTAGATTATA 8 191 0 TTTCACACCTCCTCGGACCGCTTTTT 8 5 1 AAGTATCACCTCCACATTTGAGATGGT 7 6 1 GAGGAGGTTTCTCCTCCCGAAAGGAAACC 5 8 0 GAGGAGAAACCTCCTCCCCTTTTTTCGGCCT 5 23 1 CCGATTGCACCTCCTCGACAACATGGAT 1 72 0 AAAAACACCTCCTTTTGGTAAATATG 4 284 0 TCGATTATAACACCTCTCACTGTCATATGAT 0 46 1 AAAAATCATACACCTCAAGAGAGCCCTGCTG 3 29 1 CCGATCACCTCTTATGTTGACAAAAG 9 86 0 GACATATAAAATCCTCCAGAAATTTATTCCC 4 109 1 ********* * MAP Score: 27.5245 Motif 2 TTGCATGTAGTGATAGAATCAAATGGGGATTAATTCTT 0 104 1 ATTATGTATCTGATACAATAACGTGGGTTAAATCCATG 1 41 1 TCAAAAAGTACAAACACGAGTAATACTCATT 2 3 1 TATTCACTCATAATCATAAAAAATGAGTATTACTCGTG 2 24 0 TATCGAAGTGAATTCTGCATCAAAGGGGGTATAATCAC 2 262 1 TCAAAGGGGGTATAATCACGAGAAGAGGA 2 281 1 CTCTCTTTTTAATTCTCAAAAAAGGAGGGATTCAC 3 62 1 AGTAATAAATATCTAATCCAACATGGGGTTTGTGCCCT 4 147 1 TGAAAAACAAAAAACAAACACCATGGGGTTCTTTTTTT 4 188 0 ATTGATAGAGAATTAATCTTAAAAGAGTCAACAAACAT 4 249 1 GTCAACAAACATATTTACCAAAAGGAGGTGTTTTT 4 275 1 ACATGGAAAAAGAAGAACCCCGAAGGGGTTCT 6 4 0 GGACATCAGAAAATTTTATCACGGGAGGTGGAGAGA 7 109 1 TTCTTCAACGTTAATTTCCGAAAAGAGTATAATCTAAA 8 164 1 CGAAAAGAGTATAATCTAAAATGGGAGGTGGTAAC 8 182 1 TTGTGTAATCTTTTGTCAACATAAGAGGTGATCGG 9 77 1 * ** * * * **** MAP Score: 9.95963 Motif 3 CACCTCTCACTGTCATATGATGAAAAGAAAAGAAACAGTCACAA 0 56 1 TAATGCATTTCATAATGGTATACTTAAACAATAAA 1 1 0 GTAATACTCATTTTTTATGATTATGAGTGAATAACAGGAATTAT 2 29 1 TTCACTTCGATATGTTGTAATTTTAACAAAAAATAACGGCAACC 2 230 0 TTGTGGTAGAATTTAAGTGAAAAATCATACACCTC 3 1 1 GGATTAGATATTTATTACTAATTTTCGGGAATAAATTTCTGGAG 4 122 0 AACTATTATTCTAACATGGAAAAAGAAGAACCCCGAAGGG 6 15 0 TGCGTAGAACTATTCTAACATCACACCGGAAGAAACACCAGTAC 8 89 1 GATTATACTCTTTTCGGAAATTAACGTTGAAGAAGGAATGTGTT 8 154 0 GATGTTTCTGTATGGTAATATTCTTATGGAACATTACATAAAAC 9 32 1 TTACATAAAACTTTGTGTAATCTTTTGTCAACATAAGAGGTGAT 9 65 1 * * ** ** ** ** MAP Score: 8.86078 Motif 4 AATGGGGATTAATTCTTGAAATCGTTTGAA 0 125 1 TATTCACTCATAATCATAAAAAATGAGTAT 2 32 0 TTATAGTTCAAATTCTAATATTTTCTTTGA 2 79 1 GAGCTCAAGACATTCTCAAAGTGAGAAGAA 2 145 1 TTTAAGTGAAAAATCATACACCTCAAGAGA 3 21 1 CTCTCTTTTTAATTCTCAAAAAAGGAGGGA 3 62 1 CAAACTGAAACATTCTCATAATTGACAGCG 4 56 1 CAATACTATCAATTCAAAAAACCGCTGTCA 4 78 0 AAATAAACAATATTCTTGAAAAACAAAAAA 4 212 0 GATAGAGAATTAATCTTAAAAGAGTCAACA 4 252 1 AACTATTATTCTAACATGGAAAAAGA 6 29 0 AGGTAATACTAAATCTAAAAGAGGACATCA 7 87 1 TGCGTAGAACTATTCTAACATCACACCGGA 8 89 1 GAAAAGAGTATAATCTAAAATGGGAGGTGG 8 183 1 ********** MAP Score: 7.2194 Motif 5 TGGTGAATGTGAAAAAAATATCAGATAAAAATT 0 10 0 ATTATGAAATGCATTATGTATCTGATACAATAA 1 29 1 GAATTATTTCGAATTATAGTTCAAATTCTAATA 2 66 1 CTCTTGAGGTGTATGATTTTTCACTTAAATTCT 3 17 0 CTAATTTTCGGGAATAAATTTCTGGAGGATTTT 4 116 0 CCGAAAATTAGTAATAAATATCTAATCCAACAT 4 138 1 TTGAGATGGTGTAAAATATTTCTTACACACCTC 7 27 1 ATATCTTCGTGTCAAATGTTTCAGAGGTGTGTA 7 50 0 CACCTCCCGTGATAAAATTTTCTGATGTCCTCT 7 106 0 TGTGTTCGTTGAAAAATTTTTCTTTCTGTACTG 8 127 0 * ** ** ***** MAP Score: 6.42213 Motif 6 ATGGTGAATGTGAAAAAAATATCAGATAAAA 0 13 0 TGTCATATGATGAAAAGAAAAGAAACAGTCA 0 66 1 AATGGTATACTTAAACAATAAA 1 1 0 ATTATGTATCTGATACAATAACGTGGGTTAA 1 41 1 GAAGAATGTGTGTAACAAAAAATCCATCGAA 2 169 1 ATGTTGTAATTTTAACAAAAAATAACGGCAA 2 232 0 CCCGAAAATTAGTAATAAATATCTAATCCAA 4 137 1 GTTTGTGCCCTCTAAAAAAAAGAACCCCATG 4 174 1 ACAATATTCTTGAAAAACAAAAAACAAACAC 4 205 0 TCTATCAATATGATACAAATAAACAATATTC 4 227 0 TCTTTTTCCATGTTAGAATAATAGTT 6 29 1 TTCAGAGGTGTGTAAGAAATATTTTACACCA 7 33 0 ACACCAGTACAGAAAGAAAAATTTTTCAACG 8 123 1 ***** ***** MAP Score: 5.81268 Motif 7 TATGACAGTGAGAGGTGTTATAATCGACTAT 0 42 0 TGATAGAATCAAATGGGGATTAATTCTTGAA 0 114 1 TCCATGTTGTCGAGGAGGTGCAATCGG 1 73 1 TAATCATAAAAAATGAGTATTACTCGTGTTT 2 21 0 ATTCTGCATCAAAGGGGGTATAATCACGAGA 2 273 1 AAAAGAGAGCCCAGCAGGGCTCTCTTGAGGT 3 40 0 AATTCTCAAAAAAGGAGGGATTCAC 3 72 1 CTCATAATTGACAGCGGTTTTTTGAATTGAT 4 70 1 ATCTAATCCAACATGGGGTTTGTGCCCTCTA 4 157 1 AAACAAACACCATGGGGTTCTTTTTTTTAGA 4 184 0 ATATTTACCAAAAGGAGGTGTTTTT 4 285 1 CGAAAAAAGGGGAGGAGGTTTCTCCTCCCGA 5 19 0 GAAGAACCCCGAAGGGGTTCT 6 0 0 AAAAGCGGTCCGAGGAGGTGTGAAA 8 4 0 ********* * MAP Score: 4.5901 Motif 8 AATTTTTATCTGATATTTTTTTCACATTCACCATAGTCGATTA 0 10 1 AACACTTTGTGACTGTTTCTTTTCTTTTCATCATATGACAGTG 0 63 0 TATTGTTTAAGTATACCATTATGAAATGCATTATGTATCTGAT 1 12 1 AACACGAGTAATACTCATTTTTTATGATTATGAGTGAATAACA 2 22 1 GTAATGATCGGTTGCCGTTATTTTTTGTTAAAATTACAACATA 2 221 1 AGCCCTGCTGGGCTCTCTTTTTAATTCTCAAAAAAGGAGGGAT 3 50 1 ATAAATTTCTGGAGGATTTTATATGTCTCAATACTATCAATTC 4 93 0 ACACCATGGGGTTCTTTTTTTTAGAGGGCACAAACCCCATGTT 4 166 0 AACCCCATGGTGTTTGTTTTTTGTTTTTCAAGAATATTGTTTA 4 196 1 CCCCTTCGGGGTTCTTCTTTTTCCATGTTAGAATAATAGTT 6 14 1 AAAATTTTCTGATGTCCTCTTTTAGATTTAGTATTACCTTACT 7 83 0 CACCTCCTCGGACCGCTTTTTTACGGAGGAAGACTGGTGCTTT 8 15 1 * ***** *** * MAP Score: 3.18223 Motif 9 CCCCTTCGGGGTTCTTCTTTTTCCATGTTAGAATAATAGTT 6 14 1 GGTTTCCTTTCGGGAGGAGAAACCTCCTCCCC 5 0 1 ACACCATGGGGTTCTTTTTTTTAGAGGGCACAAACCCCATGT 4 167 0 ATTTTCTGATGTCCTCTTTTAGATTTAGTATTACCTTACTAT 7 81 0 ATGATCGGTTGCCGTTATTTTTTGTTAAAATTACAACATATC 2 224 1 GCCCTGCTGGGCTCTCTTTTTAATTCTCAAAAAAGGAGGGAT 3 51 1 GAACCCCATGGTGTTTGTTTTTTGTTTTTCAAGAATATTGTT 4 195 1 AAAACTTTGTGTAATCTTTTGTCAACATAAGAGGTGATCGG 9 71 1 ATTTTTATCTGATATTTTTTTCACATTCACCATAGTCGATTA 0 11 1 ATAATTGACAGCGGTTTTTTGAATTGATAGTATTGAGACATA 4 73 1 GTGAATAACAGGAATTATTTCGAATTATAGTTCAAATTCTAA 2 55 1 GTGACTGTTTCTTTTCTTTTCATCATATGACAGTGAGAGGTG 0 56 0 ACGAGTAATACTCATTTTTTATGATTATGAGTGAATAACAGG 2 25 1 ATTAATTCTTGAAATCGTTTGAAATCTGGAGGTGACAAT 0 132 1 * ** *** ** * * MAP Score: 0.711639 Motif 10 TAGTGATAGAATCAAATGGGGATTAATTCT 0 111 1 AATCCATGTTGTCGAGGAGGTGCAATCGG 1 71 1 TCAGTTGTAACTCAAAGAAAATATTAGAAT 2 90 0 TGAATTCTGCATCAAAGGGGGTATAATCAC 2 270 1 GGTATAATCACGAGAAGAGGA 2 289 1 AATCATACACCTCAAGAGAGCCCTGCTGGG 3 32 1 CTTTTTAATTCTCAAAAAAGGAGGGATTCA 3 66 1 AAACATATTTACCAAAAGGAGGTGTTTTT 4 281 1 GTTTCTCCTCCCGAAAGGAAACC 5 3 0 GGGAGGCCGAAAAAAGGGGAGGAGGT 5 31 0 AAAGAAGAACCCCGAAGGGGTTCT 6 4 0 TTATTCTAACATGGAAAAAGAAGAACCCCG 6 20 0 AATACTAAATCTAAAAGAGGACATCAGAAA 7 91 1 AAAAAAGCGGTCCGAGGAGGTGTGAAA 8 7 0 CCGCTTTTTTACGGAGGAAGACTGGTGCTT 8 27 1 GAAATCACCTCCCGAAAAAGCATCTGCGTA 8 65 1 TAACATCACACCGGAAGAAACACCAGTACA 8 104 1 ACGTTAATTTCCGAAAAGAGTATAATCTAA 8 171 1 ********** MAP Score: 0.0274015