AlignACE 3.0 10/20/99
AlignACE2 -i TM/TM_operons059_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944253415
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TM0238	67	hypothetical protein
#1	TM0239	39	glucose-1-phosphate adenylyltransferase
#2	TM0242	146	hypothetical protein

Motif 1
     AGTAGAACCACCTCTGAAGGAATTTTAACAC	0	5	1
AAGCTTTTCCAGACAGGAGGTAAGAAAA        	0	49	1
      TAGAATTCTTTAGTGAACGAAGGAAGAGAG	1	4	1
CAGTGTTTCCATTCATGCGAGAAGGATATTTTTACT	2	74	1
GGATATTTTTACTTTACAGGGAAAGAGAAATAGCTG	2	97	1
ACAGGGAAAGAGAAATAGCTGAAAGAACCGCAGATG	2	112	1
          *  **   * ******
MAP Score: 1.86099

Motif 2
GTGTTAAAATTCCTTCAGAGGTGGTTCTAC	0	11	0
     TAGAATTCTTTAGTGAACGAAGGAA	1	5	1
TGCTCTTCTCATCGTCACAGTGATCTTTTT	2	35	1
CACAGTGATCTTTTTCACGGTTTGCAGTGT	2	50	1
AGGATATTTTTACTTTACAGGGAAAGAGAA	2	96	1
          **********
MAP Score: 0.440476