AlignACE 3.0 10/20/99
AlignACE2 -i TM/TM_operons068_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944253561
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TM1017	167	conserved hypothetical protein
#1	TM1721	64	conserved hypothetical protein

Motif 1
TTTACCTTCTTGGCTTCACCGCGTACAATT	0	30	1
TAATGGTCCAGAGAATCTCTGTGGAATGGT	0	72	1
AGTTAGCTTTTCGAATTTCTTATAGTAAAA	0	102	1
TTTCTTATAGTAAAATCTCAACTGTGATGC	0	117	1
TTGTCTGTGATGGCATCACAGTTGAGATTT	0	129	0
         CTCGAATCACCTCTCAGGATA	1	1	1
CACCCGGGGTTAAAATATCCTGAGAGGTGA	1	16	0
CCCCGGGTGATAGAATCTTCAGAAGGAGGT	1	37	1
          **********
MAP Score: 4.69525

Motif 2
GCTGCACATCTTTTACCTTCTTGGCTTCAC	0	19	1
         GTTATACCTCCAGCGTTTTTG	0	156	0
      CTCGAATCACCTCTCAGGATATTT	1	4	1
TCTCAGGATATTTTAACCCCGGGTGATAGA	1	21	1
       AATTTTCACCTCCTTCTGAAGAT	1	51	0
          **********
MAP Score: 4.66203