AlignACE 3.0 10/20/99
AlignACE2 -i TM/TM_operons072_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944253640
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TM0210	155	hypothetical protein
#1	TM0213	28	glycine dehydrogenase (decarboxylating) subunit 1

Motif 1
CGATCAGCCTCCCTGTGAATTGTTTGTTCTCT	0	12	1
TTGTTCTCTTCAATGAGAGTTTAGCATATGCA	0	35	1
CATAGGGAACCCATGTACATTTTATCACTTTT	0	69	0
CATGGGTTCCCTATGTCAATTTACCACTTCTT	0	86	1
TGTTAACAAACCCTGAATCTTGGTGTAAGGAG	0	123	1
          ****** * ***
MAP Score: 2.74935

Motif 2
CGATCAGCCTCCCTGTGAATTGTTTGTTCTC	0	12	1
TTGTTCTCTTCAATGAGAGTTTAGCATATGC	0	35	1
TTGTTAACATCACGAAGAAGTGGTAAATTGA	0	101	0
TGTTAACAAACCCTGAATCTTGGTGTAAGGA	0	123	1
AATCTTGGTGTAAGGAGGATTAAAATT    	0	138	1
CTCATAGAAATCCGGAGGTGTCCTG      	1	13	1
          ******** **
MAP Score: 0.21725