AlignACE 3.0 10/20/99
AlignACE2 -i TM/TM_profile041_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944235062
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TM0140	40	indole-3-glycerol phosphate synthase
#1	TM0143	93	response regulator
#2	TM0548	162	acetolactate synthase, large subunit

Motif 1
AAATGATACCATTAATCTGTCATCGGTTCAAC	1	14	1
TTTTCATAATAATATATTATCAGAGAAAAAAA	1	49	0
AATATATTATTATGAAAACTCAGGGATAGGGT	1	63	1
TATCCTAAATTTTACATTTTCATGATAAAAAT	2	12	1
TATCACTCACTTTAAAATGTCAAGTTGTTGAA	2	67	0
GGTTTTTAGGAATGGTATATCACTCACTTTAA	2	84	0
CCGTGATTTATTTATTATTCCAGGTCTGGTAT	2	118	1
CCAGGTCTGGTATAATCATTCAATCTCCGAGA	2	137	1
          **** *** ***
MAP Score: 3.14489

Motif 2
CCAAAAAGAAAGATATTCTGGAGATAGACGGCGA	0	12	1
TGAACCGATGACAGATTAATGGTATCATTTAAAA	1	10	0
TTCTCTGATAATATATTATTATGAAAACTCAGGG	1	54	1
CCTAAATTTTACATTTTCATGATAAAAATGCTAC	2	15	1
CAACAACTTGACATTTTAAAGTGAGTGATATACC	2	69	1
          * ******  * **
MAP Score: 0.066825