AlignACE 3.0 10/20/99 AlignACE2 -i TM/TM_sum_all044_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944237003 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TM0300 237 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein, putative #1 TM0301 64 oligopeptide ABC transporter, permease protein #2 TM0402 300 ammonium transporter #3 TM0404 47 deoxycytidylate deaminase, putative #4 TM0411 161 transcriptional regulator, XylR-related #5 TM0413 46 creatinine amidohydrolase, putative #6 TM0417 93 conserved hypothetical protein #7 TM0418 59 sugar ABC transporter, periplasmic sugar-binding protein, putative #8 TM0419 38 sugar ABC transporter, permease protein #9 TM0593 38 amino acid ABC transporter, periplasmic amino acid-binding protein #10 TM0594 54 conserved hypothetical protein #11 TM0595 94 sugar ABC transporter, periplasmic sugar-binding protein, putative #12 TM1153 25 oligopeptide ABC transporter, permease protein #13 TM1155 82 glucose-6-phosphate 1-dehydrogenase #14 TM1196 21 oligopeptide ABC transporter, ATP-binding protein #15 TM1198 69 oligopeptide ABC transporter, permease protein #16 TM1199 154 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein #17 TM1203 60 maltose ABC transporter, permease protein #18 TM1204 300 maltose ABC transporter, periplasmic maltose-binding protein #19 TM1403 135 antibiotic ABC transporter, ATP-binding protein, putative Motif 1 AGGAATCCCTCCCTTCTCGATGTT 11 80 0 GGGAGGGGGAACCCCTCCCCGAAAGTTCCA 15 13 0 TGTTTTCCCTCCCTGAACGTATGG 17 46 0 GTTCGATCTTTTCCTCCTTTGTTCTTTTC 15 50 0 AAAAACACCTCCTTTTGGTAAATA 2 286 0 ACCACCTTCACCTCCTTGCGGGTAGAT 18 283 0 GGGAGGGGTTCCCCCTCCCTTAACTTGAAA 15 24 1 GGAGGAGAAACCTCCTCCCCTTTTTTCGGC 3 22 1 GAAAATCCCCCCTCTACTGGTGTC 16 140 0 GGAGGAGGTTTCTCCTCCCGAAAGGAAACC 3 10 0 TAAATGGCAGATTCCTCCTGAAGGAGGACA 5 25 1 AAAAACACCCCCTTAAAAAAAAGT 0 223 0 AGTTTCTACCTCCTTCTCTGGATTT 6 78 0 GCAATAACACCTCCGTTATTG 14 5 0 GTTGTTGCCTCCCTGTACTCTTCT 0 4 1 CATTCCCCCGCCCCAGACGGG 1 1 1 GAAACTTTTGTTTCCTCTTTTTTTCTAATT 4 70 1 TGGTCTAAATTTCCCTCTTCGTTCTCTTCG 18 98 0 GGGGGTTCCCCCTCACTTCGCTTT 8 4 1 GCGGGAGGCTGTTCCTCCCGCTTTTCTTTT 10 10 1 GTTTTCCCCTCCAAATTAATAG 19 2 1 CTCTGACACCTCCATAGAGTCAAAA 19 120 0 GAAATTAGTTATTCCTCATTTCGTGGTAAA 13 39 1 TTCTCGATGTTTTCCCCTTGAATTATACCG 11 61 0 AATCTCACCCCCCATTTTTATTTATT 7 43 0 GTGTCCTCCTTCAGGAGGAAT 5 35 0 ********** MAP Score: 26.8667 Motif 2 GGGAGGGGTTCCCCCTCCCTTAACTTGAAAAGAACA 15 24 1 GGAGGAGAAACCTCCTCCCCTTTTTTCGGCCTCCC 3 22 1 AGTTTCTACCTCCTTCTCTGGATTTTTCAGGAAT 6 69 0 CCCCCCTTTTAAGGAATTTTAACACAAA 13 2 1 TGGGTCCCCAGCCCCTTCCATACGTTCAGGGAGGGA 17 29 1 TCGATCTTTTCCTCCTTTGTTCTTTTCAAGTTAAGG 15 41 0 GTCTAAATTTCCCTCTTCGTTCTCTTCGAAACTGTT 18 90 0 GGAGGGGGAACCCCTCCCCGAAAGTTCCATGA 15 6 0 AGGAATCCCTCCCTTCTCGATGTTTTCCCCTTGAA 11 69 0 ACCACCTTCACCTCCTTGCGGGTAGAT 18 283 0 GGGGGTTCCCCCTCACTTCGCTTTTGTGAGGTG 8 7 1 GAAAATCCCCCCTCTACTGGTGTCATAGTAAAT 16 131 0 GTTTTCCCCTCCAAATTAATAGATCCTTTT 19 4 1 ATTATCACCTCCGATTTATTATAACACAAT 9 18 0 GACGGGGCGGGCTCTTCTTTGAGATTAGACATAAGG 1 25 1 ACTCAGACCTCTCTTTCCTTGAGTTTCTTCACAAT 11 9 1 GATCTCACCTGCCTTTCTGGATTTTTACCACGAAAT 13 56 0 AAAAACACCTCCTTTTGGTAAATATGTTTGTTG 2 277 0 AATTAATAGATCCTTTTCTCTGTCTTCAAGTTCAAA 19 23 1 GTTGTTGCCTCCCTGTACTCTTCTCTTAATCA 0 6 1 TTGTGGTTAATCTTTTCTTTTTCTTTTTTTCAACCT 16 57 1 ACTTTTGTTTCCTCTTTTTTTCTAATTTTTCTTATA 4 73 1 GGAGGCTGTTCCTCCCGCTTTTCTTTTGTTTAAAAC 10 13 1 TTTTCCATTCCTTTCGTTTGTTATCGTTA 4 142 0 AATCTCACCCCCCATTTTTATTTATTTTATCACATT 7 33 0 GAAATAATCGTCTTTTTTGAGATTTTGAATGAAAAT 0 145 1 ******** ** MAP Score: 22.6957 Motif 3 TCGGGGAGGGGTTCCCCCTCCCTTAACTTGAA 15 21 1 TGTTTTCCCTCCCTGAACGTATG 17 47 0 AGGAATCCCTCCCTTCTCGATGT 11 81 0 GTTTTCCCCTCCAAATTAATAG 19 0 1 AGGGGAGGAGGTTTCTCCTCCCGAAAGGAAAC 3 11 0 AATCTCACCCCCCATTTTTATT 7 47 0 GCGGGAGGCTGTTCCTCCCGCTTTTCTTT 10 7 1 GGGGGTTCCCCCTCACTTCGCTTTTG 8 4 1 CATTCCCCCGCCCCAGACGGGG 1 0 1 GGCTGGGTCCCCAGCCCCTTCCATACGTTCAG 17 26 1 GAAAATCCCCCCTCTACTGGTG 16 142 0 AGTTTCTACCTCCTTCTCTGGAT 6 80 0 ATTATCACCTCCGATTTATTAT 9 26 0 AAAAACACCCCCTTAAAAAAAA 0 225 0 GCAATAACACCTCCGTTATTG 14 7 0 AAAAACACCTCCTTTTGGTAAA 2 288 0 ATCTCAAAGAAGAGCCCGCCCCGTCTGGGGCG 1 18 0 AAGGGGCTGGGGACCCAGCCCCGTAAAAGTTT 17 14 0 * * ******** MAP Score: 21.3627 Motif 4 AGTTATCATATTTCTTTTTAATTTGAAATAATC 0 121 1 CCCATGGTGTTTGTTTTTTGTTTTTCAAGAATA 2 199 1 GAAACTTTTGTTTCCTCTTTTTTTCTAATTTTT 4 70 1 TTTTCCATTCCTTTCGTTTGTTAT 4 147 0 TCACCCCCCATTTTTATTTATTTTATCACATTA 7 32 0 GGGGGTTCCCCCTCACTTCGCTTTTGTG 8 5 1 TTCCTCCCGCTTTTCTTTTGTTTAAAACTCCTT 10 21 1 TCAGACCTCTCTTTCCTTGAGTTTCTTCACAAT 11 12 1 TCTCGATGTTTTCCCCTTGAATTATACCGCATA 11 57 0 GAATAACTAATTTCCTTTGTGTTAAAATTCCTT 13 20 0 AGGAAATTAGTTATTCCTCATTTCGTGGTAAAA 13 37 1 CGGGGAGGGGTTCCCCCTCCCTTAACTTGAAAA 15 22 1 GTTCGATCTTTTCCTCCTTTGTTCTTTTCAAGT 15 46 0 GTGGTTAATCTTTTCTTTTTCTTTTTTTCAACC 16 59 1 CAACCTTTTCTTATTCTTGATTTTACGTGAACG 16 87 1 AAGAGTAAAATTACTCTTGTGTTGTGATTGTGA 18 19 0 TGGTCTAAATTTCCCTCTTCGTTCTCTTCGAAA 18 95 0 TAATAGATCCTTTTCTCTGTCTTCAAGTTCAAA 19 26 1 ** ****** ** MAP Score: 19.1029 Motif 5 AACTAAGCAAACGTTTGCGTAAATGTGATA 0 71 1 TCATGGAACTTTCGGGGAGGGGTTCCC 15 7 1 TTTTACGTGAACGTTCACGGTATCATTTAC 16 107 1 CATAAAACTTTTACGGGGCTGGGTCC 17 6 1 CCCCTTCCATACGTTCAGGGAGGGAAAACA 17 40 1 CCTGGAATCGACTTTTACGTCCAGAAAACG 18 166 0 CATCACGGTAACTTTCACGGTAACGTTTAC 18 243 1 TTTCACGGTAACGTTTACGTATGGTAATAT 18 255 1 ********** MAP Score: 12.472 Motif 6 TTCATTCACTATTATAACGTTTCCCACGAACTAA 0 43 1 TATCACATTTACGCAAACGTTTGCTTAGTTCGTG 0 67 0 TAAGATTACTATGAAAACATTTTCATTCAAAATC 0 165 0 TCCCAGTCAAACTGAAACATTCTCATAATTGACA 2 49 1 TCACAATCAAATTATAACCTATGCGGTATAATTC 11 38 1 TTCGGAAATTGAAACTTATTCCTGT 12 7 1 TCTTGATTTTACGTGAACGTTCACGGTATCATTT 16 101 1 GCTTGACATCACGGTAACTTTCACGGTAACGTTT 18 237 1 ATATTACCATACGTAAACGTTACCGTGAAAGTTA 18 251 0 *** *** *** * MAP Score: 10.1072 Motif 7 ATTCCCCCGCCCCAGACGGGGCGGGCTCTTCTTTG 1 11 1 GGGAGGCCGAAAAAAGGGGAGGAGGTTTCTCCTCC 3 22 0 TTCCTGAAAAATCCAGAGAAGGAGGTAGAAACT 6 70 1 GTGATAAAATAAATAAAAATGGGGGGTGAGATT 7 36 1 GAGTTTTAAACAAAAGAAAAGCGGGAGGAACAGCC 10 16 0 TGTGAAGAAACTCAAGGAAAGAGAGGTCTGAGT 11 8 0 AGGGGAAAACATCGAGAAGGGAGGGATTCCT 11 73 1 CGTGGTAAAAATCCAGAAAGGCAGGTGAGATC 13 60 1 TCATGGAACTTTCGGGGAGGGGTTCCCCCTC 15 6 1 TTGTTCTTTTCAAGTTAAGGGAGGGGGAACCCCTC 15 26 0 CTTAACTTGAAAAGAACAAAGGAGGAAAAGATCGA 15 42 1 TTTACTATGACACCAGTAGAGGGGGGATTTTC 16 132 1 GCCCCTTCCATACGTTCAGGGAGGGAAAACA 17 39 1 ACAGTTTCGAAGAGAACGAAGAGGGAAATTTAGAC 18 91 1 * * * **** *** MAP Score: 8.46471 Motif 8 AATCAATTTGTCAACTATAAGAAAAATTAGAAAAA 4 89 0 AAAGAAAAGATTAACCACAAATAAATCTTTCTATT 16 42 0 TAAAGGAGTTTTAAACAAAAGAAAAGCGGGAGGAA 10 21 0 TCACGTAAAATCAAGAATAAGAAAAGGTTGAAAAA 16 82 0 TTAAGGAATTTTAACACAAAGGAAATTAGTTATTC 13 18 1 ATATTCTTGAAAAACAAAAAACAAACACCATGGGG 2 198 0 AAGAAAAGGTTGAAAAAAAGAAAAAGAAAAGATTA 16 64 0 TATAATGTGATAAAATAAATAAAAATGGGGGGTGA 7 30 1 ATATTCTCCTTTAACCCGAGGAAACTTTTGTTTCC 4 50 1 ATGAGTAAGCTTTACTAAAAACAAAACTTTTTTTT 0 198 1 GCGGGTAGATATTACCATACGTAAACGTTACCGTG 18 258 0 GAAAAATTAGAAAAAAAGAGGAAACAAAAGTTTCC 4 69 0 GGTTGGTTAGTTAACGATAACAAACGAAAGGAATG 4 131 1 CCAGATTATGTAAACGAAACACAGAAATATTCGTT 18 135 1 AATGTGATATGAAAAAATATGGAACGATAAGTTAT 0 92 1 GTTTGTGCCCTCTAAAAAAAAGAACCCCATGGTGT 2 174 1 * *** * * * *** MAP Score: 6.14329 Motif 9 CCTCCCTGTACTCTTCTCTTAATCACTTCA 0 17 1 TGAAATAATCGTCTTTTTTGAGATTTTGAA 0 144 1 AAAAAAAGTTTTGTTTTTAGTAAAGCTTAC 0 202 0 AAAAACAAAACTTTTTTTTAAGGGGGTGTT 0 214 1 ACGGGGCGGGCTCTTCTTTGAGATTAGACA 1 26 1 TAATTGACAGCGGTTTTTTGAATTGATAGT 2 74 1 CCATGGGGTTCTTTTTTTTAGAGGGCACAA 2 176 0 CCCATGGTGTTTGTTTTTTGTTTTTCAAGA 2 199 1 CTTTTGTTTCCTCTTTTTTTCTAATTTTTC 4 74 1 CTGTTCCTCCCGCTTTTCTTTTGTTTAAAA 10 18 1 ACTCAGACCTCTCTTTCCTTGAGTTTCTTC 11 10 1 TTTGTGGTTAATCTTTTCTTTTTCTTTTTT 16 56 1 TCTTTTCTTTTTCTTTTTTTCAACCTTTTC 16 67 1 CTCTTCGAAACTGTTTTTTATCTCTACTAA 18 75 0 TTAATAGATCCTTTTCTCTGTCTTCAAGTT 19 25 1 ********** MAP Score: 1.64182 Motif 10 GATTAGACATAAGGAGTGAGAAAAATT 1 47 1 GGGAGGCCGAAAAAAGGGGAGGAGGTTTCTCCTC 3 23 0 AAAAATTAGAAAAAAAGAGGAAACAAAAGTTTCCT 4 68 0 AGTTAACGATAACAAACGAAAGGAATGGAAAA 4 139 1 GTCATTCCTGAAAAATCCAGAGAAGGAGGTAGAAA 6 66 1 TAATGTGATAAAATAAATAAAAATGGGGGGTGAGA 7 32 1 ATTGTGTTATAATAAATCGGAGGTGATAAT 9 18 1 TTCAAGGGGAAAACATCGAGAAGGGAGGGATTCCT 11 69 1 ATTTCGTGGTAAAAATCCAGAAAGGCAGGTGAGAT 13 56 1 AGGTTGAAAAAAAGAAAAAGAAAAGATTAACCACA 16 58 0 CACGTAAAATCAAGAATAAGAAAAGGTTGAAAAAA 16 81 0 GATTCCAGGAAATTATTTGGAAATAACGTTGAAAA 18 187 1 ** ** ***** * MAP Score: 0.950038 Motif 11 GAAGAGTACAGGGAGGCAACAAC 0 3 0 CCCCGTCTGGGGCGGGGGAATG 1 2 0 CCCCGCCCCAGACGGGGCGGGCTCTTCTTT 1 15 1 TTGTATAATCGTCAGGGAGG 2 0 0 ACATATTTACCAAAAGGAGGTGTTTTT 2 283 1 TTTCTCCTCCCGAAAGGAAACC 3 2 0 TTTCCTTTCGGGAGGAGAAACCTCCTCCCC 3 12 1 GCCGAAAAAAGGGGAGGAGGTTTCTCCTCC 3 22 0 TTTCCTCGGGTTAAAGGAGAATATTTTTAT 4 44 0 AATTAGAAAAAAAGAGGAAACAAAAGTTTC 4 70 0 CAGATTCCTCCTGAAGGAGGACAC 5 32 1 GAAAAATCCAGAGAAGGAGGTAGAAACT 6 75 1 AATAAAAATGGGGGGTGAGATT 7 47 1 AAAGCGAAGTGAGGGGGAACCCCC 8 4 0 GAAACTCAAGGAAAGAGAGGTCTGAGT 11 7 0 CGGTATAATTCAAGGGGAAAACATCGAGAA 11 61 1 GAAAACATCGAGAAGGGAGGGATTCCT 11 77 1 TAAAATTCCTTAAAAGGGGGG 13 1 0 ATTTTTACCACGAAATGAGGAATAACTAAT 13 42 0 ATGGAACTTTCGGGGAGGGGTTCCCCCTCC 15 12 1 TCAAGTTAAGGGAGGGGGAACCCCTCCCCG 15 22 0 GAAAAGAACAAAGGAGGAAAAGATCGAAC 15 50 1 TATGACACCAGTAGAGGGGGGATTTTC 16 137 1 CCTGAACGTATGGAAGGGGCTGGGGACCCA 17 29 0 CATACGTTCAGGGAGGGAAAACA 17 47 1 CGAAGAGAACGAAGAGGGAAATTTAGACCA 18 98 1 AATATCTACCCGCAAGGAGGTGAAGGTGGT 18 280 1 CTATTAATTTGGAGGGGAAAAC 19 2 0 ********** MAP Score: 0.480411