AlignACE 3.0 10/20/99
AlignACE2 -i TM/TM_sum_all046_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944237059
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TM1814	281	conserved hypothetical protein

Motif 1
     AGTCTTCCCTCCCCGTTTTGTTCTTC	0	5	1
GTATTGATACTCCCTCCCCTTACCACGAAGA	0	34	0
GAGTATCAATACCCGCACCACCAGCACTGAC	0	53	1
CTTTCTCACGACTCTCACCTCAGGGAAATTA	0	88	1
          ********* *
MAP Score: 4.86832

Motif 2
TCCCCGTTTTGTTCTTCTTCGTGGTAAGGGGAGGG	0	19	1
CAGAGTTTGGGGAATTTTTCTTGACCATTAAATCA	0	156	1
AGTCATTATCGATGATCTTTCTGATTTAATGGTCA	0	177	0
AGTATGCAAAGAAAATTTTAATGATAAAATTATCA	0	231	1
TTTCCCCCTTGGATGTCTTTGTGATAATTTTATCA	0	252	0
          * *  ****  ****
MAP Score: 4.26429