AlignACE 3.0 10/20/99
AlignACE2 -i TM/TM_sum_all069_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944237561
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TM0271	64	hypothetical protein
#1	TM0272	74	pyruvate,orthophosphate dikinase
#2	TM0273	41	fructose-bisphosphate aldolase
#3	TM1131	155	aminotransferase, putative
#4	TM1754	102	butyrate kinase, putative

Motif 1
AACTTATGATAACACAGGAAAGGAGGTAGCACG    	0	6	0
CCTTCTTTTTTCTTCACCAAAACTTATGATAACACAG	0	26	0
TAAGTTTTGGTGAAGAAAAAAGAAGGAGGTTCTGAAC	0	37	1
TGTCCCGGCCTTTACATTGAAGGAGGT          	2	24	1
CGAGGATCCCTCCAGATAGAAGTATTTGCATACTTCA	3	11	1
AATTGAGAATTTGATAGAAAAACTGGTATACTTTGAA	3	44	0
TGTATAATTTTTCAGAAGAAAAGATATTCCAGGAGGT	3	128	1
TACAGAAACATCAAGATCAAAATTTGTCAACATT   	4	7	0
CTTATGGAACATTACATAAAACTTTGTGTAATCTTTT	4	54	1
GTGTAATCTTTTGTCAACATAAGAGGTGATCGG    	4	79	1
          *  * *  ***  ****
MAP Score: 4.6404

Motif 2
TGTTATCATAAGTTTTGGTGAAGAAAAAAGAAGGA	0	29	1
AAAGTATACCAGTTTTTCTATCAAATTCTCAATTT	3	47	1
ATACACGTTGAATTTTAATGCAGAAATTTCGCCAG	3	87	1
ACTGGTGTATAATTTTTCAGAAGAAAAGATATTCC	3	123	1
AATGTTGACAAATTTTGATCTTGATGTTTCTGTAT	4	10	1
TCTGTATGGTAATATTCTTATGGAACATTACATAA	4	38	1
          ******  *   ***
MAP Score: 4.26049

Motif 3
CTTTCCTGTGTTATCATAAGTTTTGGTGAAGAAA	0	21	1
GGTTTTGATTTTATAATAAATTCTTGGATACGAA	1	28	1
ATACCAGTTTTTCTATCAAATTCTCAATTTTTCG	3	52	1
ATATCTTTTCTTCTGAAAAATTATACACCAGTAC	3	121	0
        AATGTTGACAAATTTTGATCTTGATG	4	2	1
ACACAAAGTTTTATGTAATGTTCCATAAGAATAT	4	49	0
ACATAAAACTTTGTGTAATCTTTTGTCAACATAA	4	67	1
          ** *** ** ** *
MAP Score: 4.15427